Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 9.3e-65 250.0 120 100.0
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 9.3e-65 250.0 120 100.0
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 9.3e-65 250.0 120 100.0
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 9.3e-65 250.0 120 100.0
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 4.6e-64 247.7 120 98.3
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 4.6e-64 247.7 120 98.3
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.3e-63 245.4 120 96.7
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.4e-60 236.1 120 92.5
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.8e-60 235.7 120 92.5
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 6.9e-60 233.8 120 90.8
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 6.9e-60 233.8 120 90.8
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.5e-59 232.6 120 90.8
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 2.0e-59 232.3 120 90.8
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 2.0e-59 232.3 120 90.0
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 2.6e-59 231.9 120 90.8
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.4e-59 231.5 120 92.5
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.0e-58 229.9 120 91.7
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.2e-58 228.8 120 90.0
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 9.3e-57 223.4 120 88.3
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 7.9e-56 220.3 120 86.7
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 4.1e-52 208.0 121 81.8
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.0e-50 203.4 121 81.8
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.7e-50 202.6 121 81.8
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.8e-50 201.4 121 81.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 5.9e-43 177.6 121 70.2
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 9.1e-36 153.7 120 61.7
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 2.0e-35 152.5 120 60.8
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.2e-34 149.1 120 60.0
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 3.8e-34 148.3 122 61.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 1.9e-33 146.0 117 60.7
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.6e-32 142.9 120 58.3
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.6e-32 142.9 112 59.8
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 2.1e-32 142.5 117 59.8
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 3.0e-31 138.7 121 56.2
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 5.2e-31 137.9 121 59.5
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 8.8e-31 137.1 115 58.3
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 8.8e-31 137.1 120 55.8
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.1e-30 136.7 120 53.3
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 2.6e-30 135.6 120 56.7
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 3.3e-30 135.2 112 58.0
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 4.4e-30 134.8 120 52.5
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 5.7e-30 134.4 120 54.2
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 7.4e-30 134.0 120 52.5
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 9.7e-30 133.7 122 56.6
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.3e-29 133.3 120 55.8
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 55.8
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.7e-29 132.9 121 56.2
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 56.7
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.7e-29 132.9 118 50.0
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.7e-29 132.9 110 56.4
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 2.8e-29 132.1 120 55.8
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 8.2e-29 130.6 121 56.2
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 1.1e-28 130.2 121 52.1
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 3.1e-28 128.6 120 53.3
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.1e-28 128.3 114 51.8
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 4.1e-28 128.3 120 53.3
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 7.0e-28 127.5 68 86.8
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 9.1e-28 127.1 122 50.0
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.2e-27 126.7 119 52.1
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.2e-27 126.7 117 53.0
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.2e-27 126.7 124 52.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 7.7e-27 124.0 120 52.5
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.0e-26 123.6 118 49.2
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 50.8
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 51.7
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.3e-26 123.2 116 52.6
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 51.7
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.7e-26 122.9 119 51.3
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 1.7e-26 122.9 121 51.2
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 52.5
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 52.5
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.7e-26 122.9 120 52.5
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 1.7e-26 122.9 116 52.6
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.9e-26 122.1 121 49.6
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 2.9e-26 122.1 124 51.6
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 2.9e-26 122.1 116 50.9
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.8e-26 121.7 114 51.8
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 6.5e-26 120.9 123 49.6
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 6.5e-26 120.9 123 49.6
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 8.5e-26 120.6 122 49.2
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 8.5e-26 120.6 118 49.2
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.5e-25 119.8 116 50.0
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.9e-25 119.4 124 54.8
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.2e-25 118.6 124 54.8
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 4.2e-25 118.2 120 50.8
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 4.2e-25 118.2 120 50.8
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 5.5e-25 117.9 119 46.2
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.2e-24 116.7 124 48.4
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.6e-24 115.2 113 47.8
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 2.3e-23 112.5 90 67.8
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.3e-23 112.5 116 50.9
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 3.0e-23 112.1 124 46.0
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 6.7e-23 110.9 62 82.3
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 6.7e-23 110.9 111 49.5
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 2.6e-22 109.0 124 44.4
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 3.3e-22 108.6 117 46.2
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.3e-21 106.7 107 52.3
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.1e-20 103.6 118 42.4
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.1e-20 103.6 121 49.6
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.4e-20 103.2 113 49.6
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.4e-20 102.4 107 52.3
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 4.5e-19 98.2 99 48.5
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.0e-18 97.1 115 41.7
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.3e-18 96.7 96 49.0
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.3e-18 96.7 108 42.6
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.7e-18 96.3 118 41.5
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 8.5e-18 94.0 123 39.0
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 7.2e-17 90.9 119 42.9
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.0e-15 85.5 53 75.5
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 4.4e-14 81.6 60 55.0
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.7e-14 81.3 66 56.1
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 7.5e-14 80.9 150 31.3
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 6.3e-13 77.8 87 41.4
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 8.3e-13 77.4 91 38.5
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 8.3e-13 77.4 85 50.6
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 2.4e-12 75.9 122 35.2
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.6e-11 73.2 108 38.9
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 1.6e-11 73.2 74 50.0
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 5.9e-11 71.2 67 53.7
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.3e-10 70.1 69 56.5
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.3e-10 69.3 53 56.6
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 2.3e-10 69.3 83 45.8
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.8e-10 68.6 80 43.8
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 8.6e-10 67.4 83 44.6
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 1.5e-09 66.6 71 50.7
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.5e-09 65.9 48 60.4
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 3.3e-09 65.5 76 42.1
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 9.5e-09 63.9 54 53.7
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 1.2e-08 63.5 127 31.5
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.4e-07 60.1 40 67.5
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.3e-07 59.3 72 41.7
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 6.8e-07 57.8 39 59.0
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 2.6e-06 55.8 44 56.8
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.6e-06 55.8 44 56.8
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 7.5e-06 54.3 78 35.9
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 7.5e-06 54.3 113 30.1
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 9.8e-06 53.9 115 32.2


User provided reference genes

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