Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 4.0e-151 538.1 283 100.0
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 2.6e-121 439.1 299 82.6
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 3.0e-114 415.6 301 79.1
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 2.0e-110 402.9 302 76.8
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 2.9e-109 399.1 306 77.8
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 2.7e-107 392.5 302 75.8
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 4.5e-102 375.2 307 72.3
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 5.0e-101 371.7 326 68.1
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.5e-100 370.2 302 72.5
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 5.5e-100 368.2 309 71.8
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 7.2e-100 367.9 302 73.2
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 9.4e-100 367.5 309 71.5
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.1e-99 366.3 309 70.9
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.1e-99 366.3 309 70.9
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 3.6e-99 365.5 252 81.3
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 1.8e-87 326.6 302 65.9
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.8e-82 310.1 214 80.8
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.8e-82 310.1 212 81.1
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.4e-79 300.4 310 60.0
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.1e-71 274.2 220 70.0
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 7.0e-71 271.6 236 66.1
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 9.2e-71 271.2 236 66.9
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.6e-70 270.4 220 69.1
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.1e-70 270.0 219 68.9
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 2.7e-70 269.6 227 67.4
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.7e-70 269.6 220 69.5
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 3.5e-70 269.2 321 54.5
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.6e-70 268.9 236 66.1
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 4.6e-70 268.9 236 66.1
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 6.0e-70 268.5 316 55.1
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 6.0e-70 268.5 231 68.0
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.0e-69 267.7 327 54.4
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 3.0e-69 266.2 206 73.3
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.9e-69 265.8 218 66.5
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 3.9e-69 265.8 222 67.6
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 6.6e-69 265.0 220 68.6
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 8.6e-69 264.6 246 63.4
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.1e-68 264.2 241 63.9
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.1e-68 264.2 241 63.9
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.1e-68 264.2 232 65.1
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 3.3e-68 262.7 220 65.9
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 3.3e-68 262.7 218 68.3
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 4.3e-68 262.3 220 67.3
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 7.3e-68 261.5 229 68.1
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 9.5e-68 261.2 228 65.8
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 9.5e-68 261.2 211 70.1
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.6e-67 260.4 246 64.2
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 2.1e-67 260.0 223 66.4
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.8e-67 259.6 222 67.1
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 2.8e-67 259.6 219 66.2
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 3.6e-67 259.2 251 59.8
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 3.6e-67 259.2 220 64.1
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 4.7e-67 258.8 257 58.8
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 6.2e-67 258.5 255 60.0
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 8.1e-67 258.1 254 59.1
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.1e-66 257.7 220 66.8
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.8e-66 256.9 206 68.0
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.8e-66 256.9 218 65.6
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.8e-66 256.9 253 60.1
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.8e-66 256.9 319 51.7
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 1.8e-66 256.9 319 52.7
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.3e-66 256.5 224 64.7
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 2.3e-66 256.5 220 65.0
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 5.2e-66 255.4 221 67.4
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 6.8e-66 255.0 267 56.6
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 6.8e-66 255.0 222 67.6
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.2e-65 254.2 218 66.1
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.2e-65 254.2 220 63.6
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 1.2e-65 254.2 210 69.0
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.5e-65 253.8 218 64.7
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 2.0e-65 253.4 241 63.9
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 2.0e-65 253.4 227 63.9
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 2.6e-65 253.1 219 66.2
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.6e-65 253.1 219 66.2
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.6e-65 253.1 220 63.6
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 5.8e-65 251.9 289 54.3
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 5.8e-65 251.9 229 65.1
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 9.9e-65 251.1 219 65.8
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.7e-64 250.4 219 65.8
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.7e-64 250.4 295 53.2
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.7e-64 250.4 220 64.5
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 2.2e-64 250.0 211 64.5
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 3.7e-64 249.2 208 65.9
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.9e-64 248.8 219 65.3
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 4.9e-64 248.8 293 53.9
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 6.4e-64 248.4 224 62.5
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 6.4e-64 248.4 219 64.4
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.1e-63 247.7 229 63.3
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.1e-63 247.7 313 52.1
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.4e-63 247.3 202 66.8
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.4e-63 247.3 204 67.6
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.4e-63 247.3 220 64.5
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.9e-63 246.9 206 68.9
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 1.9e-63 246.9 297 53.5
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 4.1e-63 245.7 206 68.9
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.2e-62 244.2 219 63.5
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 2.1e-62 243.4 205 67.3
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 4.6e-62 242.3 237 60.8
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 2.3e-61 240.0 202 65.3
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.9e-61 239.2 225 59.6
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 5.1e-61 238.8 183 71.6
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.6e-61 238.4 256 56.6
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.1e-58 231.1 187 70.1
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 3.8e-56 222.6 353 47.0
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 9.2e-55 218.0 166 72.9
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 2.5e-52 209.9 223 58.7
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 1.4e-50 204.1 209 53.6
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 4.4e-49 199.1 206 60.2
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 5.8e-49 198.7 202 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.3e-43 181.0 209 48.3
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 3.4e-41 172.9 184 50.5
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 1.2e-38 164.5 144 63.2
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 7.6e-33 145.2 230 38.7
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.3e-32 144.4 194 43.8
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.9e-31 140.6 162 47.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.5e-31 139.0 94 81.9
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.7e-30 136.7 182 43.4
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.0e-29 134.8 205 39.0
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 3.9e-29 132.9 177 44.6
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.2e-22 111.3 128 55.5
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 4.3e-20 102.8 135 51.1
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 7.7e-17 92.0 74 67.6
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 7.2e-15 85.5 60 76.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 2.0e-09 67.4 149 28.2
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.4e-07 61.2 35 85.7


User provided reference genes

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