Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 6.5e-168 594.0 297 100.0
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 5.7e-140 501.1 311 85.5
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 4.9e-139 498.0 312 85.6
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 2.4e-138 495.7 310 83.9
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 5.4e-138 494.6 312 84.6
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 5.6e-135 484.6 312 82.7
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 5.6e-135 484.6 308 83.1
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 6.1e-134 481.1 311 83.3
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 6.4e-131 471.1 309 81.9
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.0e-128 463.8 297 82.8
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 6.2e-126 454.5 321 76.3
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 2.0e-124 449.5 322 76.1
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 1.1e-122 443.7 303 77.9
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.1e-122 443.7 298 79.9
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 1.3e-120 436.8 298 79.2
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.0e-120 435.6 321 73.8
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.1e-119 433.7 298 77.2
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.9e-119 433.0 298 78.5
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 7.8e-113 411.0 298 71.1
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.3e-112 410.2 299 71.6
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.7e-112 409.8 259 78.4
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.5e-111 406.8 306 69.6
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 7.3e-111 404.4 307 70.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.8e-110 402.5 288 71.5
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 4.7e-110 401.7 304 68.4
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 8.1e-110 401.0 307 68.7
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 8.1e-110 401.0 267 75.3
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 1.1e-109 400.6 303 69.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.8e-109 399.8 304 68.1
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.8e-109 399.8 304 68.4
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 2.4e-109 399.4 303 69.0
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 3.1e-109 399.1 304 68.1
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 4.0e-109 398.7 305 69.2
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 4.0e-109 398.7 304 68.1
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 6.8e-109 397.9 260 75.0
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.5e-108 396.7 263 74.9
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 2.6e-108 396.0 294 68.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 2.6e-108 396.0 296 70.6
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 3.4e-108 395.6 259 75.7
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 3.4e-108 395.6 305 68.2
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 5.8e-108 394.8 261 75.1
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 5.8e-108 394.8 256 74.2
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 5.8e-108 394.8 299 69.2
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.3e-107 393.7 259 73.4
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.3e-107 393.7 263 74.9
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.2e-107 392.9 256 74.6
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 2.9e-107 392.5 303 67.0
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.9e-107 392.5 255 78.4
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 6.4e-107 391.3 306 67.6
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.4e-106 390.2 250 78.4
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.9e-106 389.8 306 66.3
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 2.4e-106 389.4 306 68.3
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 5.4e-106 388.3 299 66.2
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 7.1e-106 387.9 303 65.7
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 9.2e-106 387.5 266 73.7
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.6e-105 386.7 292 67.5
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 2.7e-105 386.0 299 67.2
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 3.5e-105 385.6 306 65.4
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 3.5e-105 385.6 303 67.3
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 4.6e-105 385.2 259 75.3
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 6.0e-105 384.8 313 65.2
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 7.8e-105 384.4 264 72.7
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 7.8e-105 384.4 310 66.1
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 1.0e-104 384.0 305 66.2
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 2.3e-104 382.9 256 71.9
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 2.3e-104 382.9 304 65.8
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.3e-104 382.9 260 72.3
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 3.9e-104 382.1 312 66.3
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 6.6e-104 381.3 297 66.0
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.9e-103 379.8 315 65.1
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.9e-103 379.8 282 70.2
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 4.3e-103 378.6 278 69.8
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 9.6e-103 377.5 309 64.1
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.6e-102 376.7 300 65.7
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.6e-102 376.7 300 65.7
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 8.1e-102 374.4 308 64.6
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.4e-101 373.6 300 64.0
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.1e-101 372.5 265 69.8
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 6.9e-101 371.3 294 64.3
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 9.0e-101 370.9 301 63.5
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 1.2e-100 370.5 306 65.7
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.0e-100 369.8 264 67.4
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 5.8e-100 368.2 265 69.1
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 7.6e-100 367.9 256 69.9
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.9e-99 365.9 285 69.1
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 6.4e-99 364.8 358 57.3
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 6.4e-99 364.8 259 67.6
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 6.4e-99 364.8 262 70.6
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.1e-98 364.0 253 71.9
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 4.2e-98 362.1 275 67.6
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 5.4e-98 361.7 264 67.4
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 5.4e-98 361.7 264 67.4
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 8.7e-96 354.4 258 67.1
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 8.1e-94 347.8 297 65.7
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.8e-91 339.0 267 65.2
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 4.9e-91 338.6 260 65.4
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.9e-90 336.7 291 60.5
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 4.2e-90 335.5 225 70.7
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 8.7e-88 327.8 256 64.5
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.9e-87 326.6 261 63.6
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.8e-86 322.8 285 63.2
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 6.2e-86 321.6 273 60.1
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 6.2e-86 321.6 258 64.3
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 8.1e-86 321.2 265 65.3
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 9.0e-85 317.8 251 64.9
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.7e-83 313.5 261 59.8
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 4.9e-83 312.0 245 63.7
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.4e-82 310.5 256 60.5
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 7.1e-82 308.1 245 62.9
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 4.6e-81 305.4 292 62.0
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 7.4e-79 298.1 209 72.2
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 9.6e-79 297.7 254 61.4
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 2.1e-78 296.6 259 57.9
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.5e-76 290.4 218 66.1
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 2.0e-76 290.0 202 72.3
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.0e-75 287.7 259 59.1
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.2e-75 286.6 256 63.3
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 5.0e-67 258.8 216 66.2
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 4.2e-66 255.8 256 55.9
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 2.1e-65 253.4 220 62.3
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 4.6e-65 252.3 216 62.0
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 1.3e-62 244.2 306 49.7
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 3.1e-53 213.0 270 44.4
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 5.7e-47 192.2 255 43.1
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 5.7e-47 192.2 120 75.8
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 7.7e-44 181.8 120 74.2
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 4.7e-41 172.6 264 39.0
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.2e-39 167.9 123 68.3
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 2.2e-35 153.7 112 67.0
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 7.2e-34 148.7 89 82.0
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.0e-32 144.8 118 63.6
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-32 143.7 141 57.4
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 4.9e-22 109.4 84 64.3
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 4.9e-22 109.4 70 70.0
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 3.5e-20 103.2 228 32.5
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 5.9e-20 102.4 258 30.2
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 1.0e-19 101.7 56 83.9
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 9.5e-18 95.1 105 53.3
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 2.1e-17 94.0 79 68.4
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 2.8e-17 93.6 249 30.5
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 5.8e-15 85.9 207 30.0
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 7.5e-15 85.5 73 65.8
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 2.9e-14 83.6 61 62.3
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 4.1e-13 79.7 64 68.8
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 7.0e-13 79.0 219 26.9
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 9.2e-13 78.6 236 27.5
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 9.2e-13 78.6 51 68.6
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 1.0e-11 75.1 47 72.3
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 3.0e-11 73.6 73 60.3
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 9.5e-10 68.6 105 43.8
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 1.8e-08 64.3 67 47.8
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 5.2e-08 62.8 41 70.7
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.0e-07 60.8 109 38.5
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 8.3e-06 55.5 64 39.1
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 8.3e-06 55.5 64 39.1


User provided reference genes

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