Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13918 Brassica carinata HOM05D001432 ORTHO05D094951 5.1e-54 214.2 109 100.0
BcaB01g01365 Brassica carinata HOM05D001432 ORTHO05D002371 1.2e-34 149.8 109 74.3
BcaC04g20930 Brassica carinata HOM05D001432 ORTHO05D002371 1.6e-31 139.4 110 71.8
C09p37790 Brassica napus HOM05D001432 ORTHO05D002371 1.6e-31 139.4 110 71.8
BolC9t56612H Brassica oleracea HOM05D001432 ORTHO05D002371 1.6e-31 139.4 110 71.8
AL6G41630 Arabidopsis lyrata HOM05D001432 ORTHO05D002371 1.8e-30 136.0 109 71.6
AT4G08920 Arabidopsis thaliana HOM05D001432 ORTHO05D002371 1.8e-30 136.0 109 71.6
A09p29920 Brassica napus HOM05D001432 ORTHO05D002371 2.3e-30 135.6 110 69.1
BraA09t38553Z Brassica rapa HOM05D001432 ORTHO05D002371 2.3e-30 135.6 110 69.1
Sp6g08810 Schrenkiella parvula HOM05D001432 ORTHO05D002371 2.3e-30 135.6 109 69.7
Carub.0006s2751 Capsella rubella HOM05D001432 ORTHO05D002371 1.5e-29 132.9 109 68.8
CARHR259940 Cardamine hirsuta HOM05D001432 ORTHO05D002371 1.2e-26 123.2 111 64.0
Aa31LG9G14620 Aethionema arabicum HOM05D001432 ORTHO05D002371 3.7e-20 101.7 120 55.8
THA.LOC104816737 Tarenaya hassleriana HOM05D001432 ORTHO05D002371 1.9e-16 89.4 116 54.3
THA.LOC104813117 Tarenaya hassleriana HOM05D001432 ORTHO05D002371 1.6e-15 86.3 115 53.0
Cpa.g.sc36.135 Carica papaya HOM05D001432 ORTHO05D002371 3.5e-10 68.6 98 52.0
CiPaw.08G045400 Carya illinoinensis HOM05D001432 ORTHO05D002371 2.3e-09 65.9 111 44.1
Atru.chr13.1183 Acer truncatum HOM05D001432 ORTHO05D002371 6.6e-09 64.3 103 49.5
Potri.002G096900 Populus trichocarpa HOM05D001432 ORTHO05D002371 8.6e-09 63.9 102 49.0
Manes.02G152400 Manihot esculenta HOM05D001432 ORTHO05D002371 1.1e-08 63.5 106 49.1
MSTRG.22155 Avicennia marina HOM05D001432 ORTHO05D002371 1.9e-08 62.8 111 43.2
Dinv44777 Davidia involucrata HOM05D001432 ORTHO05D002371 1.9e-08 62.8 106 46.2
Ciclev10000591m.g Citrus clementina HOM05D001432 ORTHO05D002371 2.5e-08 62.4 127 43.3
PSO210G4129 Papaver somniferum HOM05D001432 ORTHO05D002371 3.3e-08 62.0 99 46.5
arahy.Tifrunner.gnm1.ann1.VS4P4P Arachis hypogaea HOM05D001432 ORTHO05D002371 4.3e-08 61.6 107 45.8
Prupe.1G517600 Prunus persica HOM05D001432 ORTHO05D002371 4.3e-08 61.6 95 49.5
TPR.G14903 Trifolium pratense HOM05D001432 ORTHO05D002371 4.3e-08 61.6 108 44.4
arahy.Tifrunner.gnm1.ann1.FSP2M7 Arachis hypogaea HOM05D001432 ORTHO05D002371 5.6e-08 61.2 107 45.8
Lalb_Chr10g0102401 Lupinus albus HOM05D001432 ORTHO05D002371 5.6e-08 61.2 109 45.0
Thecc.08G106300 Theobroma cacao HOM05D001432 ORTHO05D002371 5.6e-08 61.2 107 43.9
COL.COLO4_16390 Corchorus olitorius HOM05D001432 ORTHO05D002371 7.3e-08 60.8 102 49.0
TAR381G1263 Trochodendron aralioides HOM05D001432 ORTHO05D002371 7.3e-08 60.8 97 46.4
vmacro04744 Vaccinium macrocarpon HOM05D001432 ORTHO05D002371 7.3e-08 60.8 89 48.3
Lalb_Chr04g0253141 Lupinus albus HOM05D001432 ORTHO05D002371 9.5e-08 60.5 113 44.2
PSO447G0016 Papaver somniferum HOM05D001432 ORTHO05D002371 9.5e-08 60.5 100 46.0
Phvul.008G173700 Phaseolus vulgaris HOM05D001432 ORTHO05D002371 9.5e-08 60.5 107 43.9
Psat2g072040 Pisum sativum HOM05D001432 ORTHO05D002371 9.5e-08 60.5 111 45.0
Sabra02G0076200 Salix brachista HOM05D001432 ORTHO05D002371 1.2e-07 60.1 93 49.5
MSTRG.24456 Avicennia marina HOM05D001432 ORTHO05D002371 1.6e-07 59.7 113 41.6
MD00G1201600 Malus domestica HOM05D001432 ORTHO05D002371 1.6e-07 59.7 106 41.5
Haze_22273 Corylus avellana HOM05D001432 ORTHO05D002371 2.1e-07 59.3 102 47.1
FAN08G1600 Fragaria x ananassa HOM05D001432 ORTHO05D002371 2.8e-07 58.9 78 51.3
Gohir.A05G266800 Gossypium hirsutum HOM05D001432 ORTHO05D002371 2.8e-07 58.9 106 48.1
Ca_05277_v3 Cicer arietinum L. HOM05D001432 ORTHO05D002371 3.6e-07 58.5 96 47.9
Potri.005G164700 Populus trichocarpa HOM05D001432 ORTHO05D002371 3.6e-07 58.5 102 49.0
TWI12G0842 Tripterygium wilfordii HOM05D001432 ORTHO05D002371 3.6e-07 58.5 102 45.1
Medtr5g063920 Medicago truncatula HOM05D001432 ORTHO05D002371 4.7e-07 58.2 96 46.9
Actinidia30775 Actinidia chinensis HOM05D001432 ORTHO05D002371 6.2e-07 57.8 101 46.5
Glyma.14G174200 Glycine max HOM05D001432 ORTHO05D002371 6.2e-07 57.8 107 42.1
Manes.18G067300 Manihot esculenta HOM05D001432 ORTHO05D002371 6.2e-07 57.8 106 46.2
Oeu002709.1 Olea europaea HOM05D001432 ORTHO05D002371 6.2e-07 57.8 106 44.3
QL12p036839 Quercus lobata HOM05D001432 ORTHO05D002371 6.2e-07 57.8 101 45.5
VMungo0647G1228 Vigna mungo HOM05D001432 ORTHO05D002371 6.2e-07 57.8 98 45.9
CAN.G101.4 Capsicum annuum HOM05D001432 ORTHO05D002371 8.0e-07 57.4 94 44.7
Lj1g0025181 Lotus japonicus HOM05D001432 ORTHO05D002371 8.0e-07 57.4 89 47.2
MD15G1369900 Malus domestica HOM05D001432 ORTHO05D002371 8.0e-07 57.4 111 38.7
Rhsim07G0202900 Rhododendron simsii HOM05D001432 ORTHO05D002371 8.0e-07 57.4 90 47.8
CSS0017979 Camellia sinensis var. sinensis HOM05D001432 ORTHO05D002371 1.1e-06 57.0 102 46.1
AUR62027766 Chenopodium quinoa HOM05D001432 ORTHO05D002371 1.1e-06 57.0 112 42.9
Lj1g0010282 Lotus japonicus HOM05D001432 ORTHO05D002371 1.1e-06 57.0 108 41.7
TAR628G0761 Trochodendron aralioides HOM05D001432 ORTHO05D002371 1.1e-06 57.0 106 42.5
Gohir.D05G268400 Gossypium hirsutum HOM05D001432 ORTHO05D002371 1.4e-06 56.6 106 47.2
Gorai.009G280900 Gossypium raimondii HOM05D001432 ORTHO05D002371 1.4e-06 56.6 106 47.2
TAR376G0873 Trochodendron aralioides HOM05D001432 ORTHO05D002371 1.4e-06 56.6 106 44.3
CANSAT25G3454 Cannabis sativa HOM05D001432 ORTHO05D002371 1.8e-06 56.2 108 39.8
Duzib041G0596 Durio zibethinus HOM05D001432 ORTHO05D002371 1.8e-06 56.2 102 48.0
Glyma.06G103200 Glycine max HOM05D001432 ORTHO05D002371 1.8e-06 56.2 89 46.1
RcHm_v2.0_Chr7g0238851 Rosa chinensis HOM05D001432 ORTHO05D002371 1.8e-06 56.2 79 49.4
Cfa013639 Carpinus fangiana HOM05D001432 ORTHO05D002371 2.3e-06 55.8 102 44.1
FvH4_5g37290 Fragaria vesca HOM05D001432 ORTHO05D002371 2.3e-06 55.8 79 50.6
FAN18G1941 Fragaria x ananassa HOM05D001432 ORTHO05D002371 2.3e-06 55.8 79 50.6
Hund16903 Selenicereus undatus HOM05D001432 ORTHO05D002371 2.3e-06 55.8 105 44.8
FAN04G1139 Fragaria x ananassa HOM05D001432 ORTHO05D002371 3.1e-06 55.5 79 50.6
FAN13G0847 Fragaria x ananassa HOM05D001432 ORTHO05D002371 3.1e-06 55.5 79 50.6
Glyma.04G101500 Glycine max HOM05D001432 ORTHO05D002371 3.1e-06 55.5 107 43.0
Nn5g30092 Nelumbo nucifera HOM05D001432 ORTHO05D002371 3.1e-06 55.5 97 44.3
PGR042G3104 Punica granatum HOM05D001432 ORTHO05D002371 3.1e-06 55.5 118 40.7
Gorai.009G236700 Gossypium raimondii HOM05D001432 ORTHO05D002371 4.0e-06 55.1 106 45.3
AUR62018922 Chenopodium quinoa HOM05D001432 ORTHO05D002371 5.2e-06 54.7 112 42.0
Nitab4.5_0000421g0020 Nicotiana tabacum HOM05D001432 ORTHO05D002371 5.2e-06 54.7 94 47.9
Peaxi162Scf00392g00518 Petunia axillaris HOM05D001432 ORTHO05D002371 5.2e-06 54.7 106 41.5
unitig_22.g5823 Utricularia gibba HOM05D001432 ORTHO05D002371 5.2e-06 54.7 81 45.7
Glyma.13G089200 Glycine max HOM05D001432 ORTHO05D002371 6.8e-06 54.3 107 42.1
HanXRQChr05g0145441 Helianthus annuus HOM05D001432 ORTHO05D002371 6.8e-06 54.3 112 41.1
vmacro21266 Vaccinium macrocarpon HOM05D001432 ORTHO05D002371 6.8e-06 54.3 92 44.6
CiPaw.07G179600 Carya illinoinensis HOM05D001432 ORTHO05D002371 8.9e-06 53.9 79 48.1


User provided reference genes

Program Settings