Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13821 Brassica carinata HOM05D003008 ORTHO05D003346 1.5e-92 342.8 168 100.0
BcaC05g27092 Brassica carinata HOM05D003008 ORTHO05D003346 3.8e-48 195.3 194 56.7
C05p29740 Brassica napus HOM05D003008 ORTHO05D003346 3.8e-48 195.3 194 56.7
BolC5t31702H Brassica oleracea HOM05D003008 ORTHO05D003346 3.8e-48 195.3 194 56.7
BcaB07g32707 Brassica carinata HOM05D003008 ORTHO05D003346 6.5e-48 194.5 194 56.7
Sp1g26580 Schrenkiella parvula HOM05D003008 ORTHO05D003346 8.5e-48 194.1 194 56.2
A09p35720 Brassica napus HOM05D003008 ORTHO05D003346 2.5e-47 192.6 193 56.5
BraA09t39097Z Brassica rapa HOM05D003008 ORTHO05D003346 2.5e-47 192.6 193 56.5
Thhalv10006950m.g Eutrema salsugineum HOM05D003008 ORTHO05D003346 8.2e-43 177.6 193 52.3
AL1G44740 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 2.6e-41 172.6 193 51.8
AT1G30680 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 5.2e-37 158.3 193 48.7
Carub.0001s2896 Capsella rubella HOM05D003008 ORTHO05D003346 8.8e-37 157.5 193 47.2
CARHR030150 Cardamine hirsuta HOM05D003008 ORTHO05D003346 3.3e-36 155.6 192 48.4
Aa31LG6G11900 Aethionema arabicum HOM05D003008 ORTHO05D003346 7.2e-31 137.9 181 45.3
THA.LOC104798583 Tarenaya hassleriana HOM05D003008 ORTHO05D003346 3.0e-29 132.5 194 42.8
Gohir.D05G113000 Gossypium hirsutum HOM05D003008 ORTHO05D003346 2.7e-25 119.4 178 39.9
CiPaw.03G113700 Carya illinoinensis HOM05D003008 ORTHO05D003346 3.5e-25 119.0 194 38.7
Gorai.009G117100 Gossypium raimondii HOM05D003008 ORTHO05D003346 3.5e-25 119.0 178 39.9
Gohir.A05G112501 Gossypium hirsutum HOM05D003008 ORTHO05D003346 5.9e-25 118.2 178 39.9
RcHm_v2.0_Chr5g0018171 Rosa chinensis HOM05D003008 ORTHO05D003346 5.9e-25 118.2 180 41.1
FAN16G0127 Fragaria x ananassa HOM05D003008 ORTHO05D003346 7.7e-25 117.9 123 52.0
FvH4_3g11220 Fragaria vesca HOM05D003008 ORTHO05D003346 1.3e-24 117.1 180 40.6
FAN21G3776 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.3e-24 117.1 180 40.6
Thecc.06G011200 Theobroma cacao HOM05D003008 ORTHO05D003346 1.3e-24 117.1 178 38.2
Atru.chr10.699 Acer truncatum HOM05D003008 ORTHO05D003346 2.9e-24 115.9 194 36.6
Solyc02g022830.3 Solanum lycopersicum HOM05D003008 ORTHO05D003346 2.9e-24 115.9 185 38.9
Sopen02g006420 Solanum pennellii HOM05D003008 ORTHO05D003346 2.9e-24 115.9 185 38.9
Glyma.15G134500 Glycine max HOM05D003008 ORTHO05D003346 8.5e-24 114.4 193 37.8
Prupe.4G099700 Prunus persica HOM05D003008 ORTHO05D003346 8.5e-24 114.4 178 39.9
MELO3C002865.2 Cucumis melo HOM05D003008 ORTHO05D003346 1.1e-23 114.0 179 39.1
MD10G1243800 Malus domestica HOM05D003008 ORTHO05D003346 1.1e-23 114.0 178 38.8
Nn7g37799 Nelumbo nucifera HOM05D003008 ORTHO05D003346 1.1e-23 114.0 185 37.8
FAN25G1988 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.5e-23 113.6 180 40.0
PGR044G1782 Punica granatum HOM05D003008 ORTHO05D003346 1.9e-23 113.2 185 37.8
TWI15G0228 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 1.9e-23 113.2 189 37.0
CDE01G0377 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 3.2e-23 112.5 194 37.1
Rhsim13G0124600 Rhododendron simsii HOM05D003008 ORTHO05D003346 3.2e-23 112.5 178 39.9
VMungo0540G1323 Vigna mungo HOM05D003008 ORTHO05D003346 3.2e-23 112.5 189 37.0
MBI02_g32311_MAGBIO Magnolia biondii HOM05D003008 ORTHO05D003346 4.2e-23 112.1 196 37.2
GSVIVG01008778001 Vitis vinifera HOM05D003008 ORTHO05D003346 4.2e-23 112.1 185 36.2
Eucgr.D01628 Eucalyptus grandis HOM05D003008 ORTHO05D003346 5.5e-23 111.7 201 35.8
Phvul.006G124400 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 5.5e-23 111.7 183 37.7
Glyma.09G028600 Glycine max HOM05D003008 ORTHO05D003346 7.2e-23 111.3 193 36.8
HanXRQChr01g0020641 Helianthus annuus HOM05D003008 ORTHO05D003346 7.2e-23 111.3 178 39.3
GSVIVG01021728001 Vitis vinifera HOM05D003008 ORTHO05D003346 7.2e-23 111.3 178 37.1
vmacro03472 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 9.4e-23 110.9 178 38.2
SalBow8G1512 Salvia bowleyana HOM05D003008 ORTHO05D003346 1.2e-22 110.5 178 37.6
SGA_v2.0_scaffold223G42877 Striga asiatica HOM05D003008 ORTHO05D003346 1.2e-22 110.5 182 36.3
Actinidia33712 Actinidia chinensis HOM05D003008 ORTHO05D003346 1.6e-22 110.2 194 36.6
Manes.14G125700 Manihot esculenta HOM05D003008 ORTHO05D003346 1.6e-22 110.2 178 38.2
Os06g0671700 Oryza sativa ssp. japonica HOM05D003008 ORTHO05D003346 1.6e-22 110.2 179 36.9
HPP92_005928 Vanilla planifolia HOM05D003008 ORTHO05D003346 1.6e-22 110.2 178 37.6
CANSAT35G1991 Cannabis sativa HOM05D003008 ORTHO05D003346 2.1e-22 109.8 133 47.4
Sed0021502 Sechium edule HOM05D003008 ORTHO05D003346 2.1e-22 109.8 179 38.0
ECA248G0148 Erigeron canadensis HOM05D003008 ORTHO05D003346 2.7e-22 109.4 178 38.2
Medtr2g031620 Medicago truncatula HOM05D003008 ORTHO05D003346 2.7e-22 109.4 194 36.6
Sc10g0009650 Simmondsia chinensis HOM05D003008 ORTHO05D003346 2.7e-22 109.4 178 36.0
CSS0037242 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 3.6e-22 109.0 178 38.2
AUR62025821 Chenopodium quinoa HOM05D003008 ORTHO05D003346 3.6e-22 109.0 181 38.1
Ca_25498_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 3.6e-22 109.0 194 35.6
CsaV3_1G037560 Cucumis sativus L. HOM05D003008 ORTHO05D003346 3.6e-22 109.0 179 36.9
Migut.M01920 Erythranthe guttata HOM05D003008 ORTHO05D003346 4.7e-22 108.6 178 37.1
Lsat_1_v5_gn_1_91720 Lactuca sativa HOM05D003008 ORTHO05D003346 4.7e-22 108.6 178 37.6
Aqoxy1G01512 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 8.0e-22 107.8 206 36.4
HanXRQChr11g0340941 Helianthus annuus HOM05D003008 ORTHO05D003346 8.0e-22 107.8 178 38.8
Lj6g0020929 Lotus japonicus HOM05D003008 ORTHO05D003346 8.0e-22 107.8 177 37.9
Potri.001G461300 Populus trichocarpa HOM05D003008 ORTHO05D003346 8.0e-22 107.8 174 38.5
QL03p057306 Quercus lobata HOM05D003008 ORTHO05D003346 8.0e-22 107.8 194 36.1
ATR0763G210 Amborella trichopoda HOM05D003008 ORTHO05D003346 1.0e-21 107.5 194 36.6
Aqoxy7G01281 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 1.8e-21 106.7 206 35.9
Nitab4.5_0000076g0040 Nicotiana tabacum HOM05D003008 ORTHO05D003346 3.0e-21 105.9 175 38.3
Ciclev10014667m.g Citrus clementina HOM05D003008 ORTHO05D003346 4.0e-21 105.5 178 35.4
Dinv08829 Davidia involucrata HOM05D003008 ORTHO05D003346 4.0e-21 105.5 178 37.1
arahy.Tifrunner.gnm1.ann1.WH7KDQ Arachis hypogaea HOM05D003008 ORTHO05D003346 5.2e-21 105.1 193 35.8
DCAR_007820 Daucus carota HOM05D003008 ORTHO05D003346 5.2e-21 105.1 179 36.9
Lalb_Chr18g0058241 Lupinus albus HOM05D003008 ORTHO05D003346 5.2e-21 105.1 174 37.9
SEGI_26502 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 6.8e-21 104.8 194 36.6
Psat1g164800 Pisum sativum HOM05D003008 ORTHO05D003346 8.8e-21 104.4 192 35.4
Oeu060320.2 Olea europaea HOM05D003008 ORTHO05D003346 1.2e-20 104.0 174 36.2
Cc09_g07360 Coffea canephora HOM05D003008 ORTHO05D003346 2.6e-20 102.8 178 36.5
HPP92_013208 Vanilla planifolia HOM05D003008 ORTHO05D003346 2.6e-20 102.8 178 37.1
EL10Ac8g19523 Beta vulgaris HOM05D003008 ORTHO05D003346 4.4e-20 102.1 188 35.1
Lalb_Chr15g0088941 Lupinus albus HOM05D003008 ORTHO05D003346 4.4e-20 102.1 174 37.4
arahy.Tifrunner.gnm1.ann1.447SJP Arachis hypogaea HOM05D003008 ORTHO05D003346 5.7e-20 101.7 196 35.7
TPR.G15179 Trifolium pratense HOM05D003008 ORTHO05D003346 5.7e-20 101.7 173 37.0
Ah.09g232330 Amaranthus hybridus HOM05D000070 ORTHO05D003346 9.8e-20 100.9 190 36.3
AagrBONN_evm.TU.Sc2ySwM_117.1205 Anthoceros agrestis HOM05D003008 ORTHO05D003346 9.8e-20 100.9 177 37.3
PSO541G5492 Papaver somniferum HOM05D003008 ORTHO05D003346 9.8e-20 100.9 176 36.9
PSO675G7488 Papaver somniferum HOM05D003008 ORTHO05D003346 9.8e-20 100.9 176 36.9
Sabra16G0313000 Salix brachista HOM05D003008 ORTHO05D003346 1.3e-19 100.5 174 36.2
Lj2A336T37 Lonicera japonica HOM05D003008 ORTHO05D003346 4.9e-19 98.6 178 34.3
DCAR_000835 Daucus carota HOM05D003008 ORTHO05D003346 6.3e-19 98.2 170 34.7
Lj1C1159T8 Lonicera japonica HOM05D003008 ORTHO05D003346 8.3e-19 97.8 178 34.8
Mapoly0003s0305 Marchantia polymorpha HOM05D003008 ORTHO05D003346 1.2e-17 94.0 194 33.5
Zm00001eb274090 Zea mays HOM05D003008 ORTHO05D003346 1.2e-17 94.0 193 33.2
SHI24823 Sapria himalayana HOM05D003008 ORTHO05D003346 5.9e-17 91.7 72 62.5
Pp3c12_26070 Physcomitrium patens HOM05D003008 ORTHO05D003346 1.0e-16 90.9 194 32.5
CDE02G0274 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 3.8e-16 89.0 177 33.3
Atru.chr2.1568 Acer truncatum HOM05D003008 ORTHO05D003346 1.5e-15 87.0 72 56.9
SMO364G0389 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 1.5e-15 87.0 169 34.9
Cfa023567 Carpinus fangiana HOM05D003008 ORTHO05D003346 1.2e-14 84.0 193 32.1
ClCG03G008470 Citrullus lanatus HOM05D003008 ORTHO05D003346 1.2e-14 84.0 56 66.1
unitig_92.g28176 Utricularia gibba HOM05D003008 ORTHO05D003346 1.2e-14 84.0 71 60.6
COL.COLO4_22894 Corchorus olitorius HOM05D003008 ORTHO05D003346 2.8e-14 82.8 157 32.5
Duzib235G1093 Durio zibethinus HOM05D003008 ORTHO05D003346 8.0e-14 81.3 152 33.6
ATR0681G109 Amborella trichopoda HOM05D003008 ORTHO05D003346 3.0e-13 79.3 81 48.1
PRCOL_00000580 Prasinoderma coloniale HOM05D003008 ORTHO05D003346 8.9e-13 77.8 170 31.8
CBR_g16946 Chara braunii HOM05D003008 ORTHO05D003346 1.2e-12 77.4 213 29.1
CAN.G39.25 Capsicum annuum HOM05D003008 ORTHO05D003346 2.3e-08 63.2 60 50.0
Haze_13592 Corylus avellana HOM05D003008 ORTHO05D003346 2.3e-08 63.2 53 54.7
CBR_g38556 Chara braunii HOM05D003008 ORTHO05D003346 3.0e-08 62.8 72 45.8
AUR62029886 Chenopodium quinoa HOM05D003008 ORTHO05D003346 1.5e-07 60.5 59 50.8
Cre12.g514950 Chlamydomonas reinhardtii HOM05D003008 ORTHO05D003346 3.3e-07 59.3 74 43.2
Haze_13591 Corylus avellana HOM05D003008 ORTHO05D003346 5.6e-07 58.5 50 60.0
MCO14G370 Micromonas commoda HOM05D003008 ORTHO05D003346 1.2e-06 57.4 51 49.0
SGA_v2.0_scaffold1G00291 Striga asiatica HOM05D003008 ORTHO05D003346 1.2e-06 57.4 73 43.8
arahy.Tifrunner.gnm1.ann1.7QV6JY Arachis hypogaea HOM05D003008 ORTHO05D003346 6.2e-06 55.1 55 50.9


User provided reference genes

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