Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 7.3e-187 657.1 346 100.0
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 3.4e-184 648.3 346 99.1
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 6.8e-177 624.0 346 95.7
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 8.9e-177 623.6 346 94.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 3.2e-174 615.1 346 93.6
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 3.5e-173 611.7 346 90.2
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.7e-164 582.8 348 92.0
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 4.5e-160 568.2 347 85.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.9e-158 562.8 348 87.9
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 3.5e-157 558.5 318 92.1
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.3e-156 556.6 344 87.2
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.4e-153 545.8 359 84.4
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 4.6e-149 531.6 347 84.1
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 7.9e-149 530.8 318 88.4
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 9.0e-137 490.7 342 79.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 2.4e-129 466.1 324 75.0
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 4.5e-128 461.8 342 70.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 7.7e-128 461.1 320 74.1
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.3e-127 460.3 330 74.5
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.3e-127 460.3 344 69.2
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.7e-127 459.9 319 70.8
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.7e-127 459.9 322 71.4
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 2.2e-127 459.5 331 73.4
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.8e-127 458.8 341 72.4
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 5.5e-126 454.9 341 71.8
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 5.5e-126 454.9 320 69.7
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 2.7e-125 452.6 323 69.7
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 2.7e-125 452.6 322 70.5
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 6.1e-125 451.4 340 70.9
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 6.1e-125 451.4 321 71.7
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.3e-124 449.5 340 69.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 3.0e-124 449.1 317 68.8
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 3.9e-124 448.7 323 71.2
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 4.4e-123 445.3 315 71.4
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 7.4e-123 444.5 314 69.7
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 9.7e-123 444.1 323 67.2
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.7e-122 443.4 325 67.1
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.8e-122 442.6 322 69.9
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 3.7e-122 442.2 322 70.8
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 3.7e-122 442.2 321 67.3
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 4.8e-122 441.8 323 71.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.8e-121 439.9 328 66.5
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 2.4e-121 439.5 341 71.0
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 4.1e-121 438.7 333 69.1
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 5.3e-121 438.3 329 66.3
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 5.3e-121 438.3 319 68.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 6.9e-121 438.0 327 66.7
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 9.1e-121 437.6 330 69.7
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.2e-120 437.2 321 67.0
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 1.2e-120 437.2 325 71.7
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.2e-120 437.2 329 66.3
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.0e-120 436.4 343 65.6
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 5.9e-120 434.9 363 62.5
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.7e-119 433.3 336 68.8
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.2e-119 433.0 328 65.5
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.2e-119 433.0 330 65.2
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 3.8e-119 432.2 322 69.6
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 5.0e-119 431.8 331 68.3
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.9e-118 429.9 320 69.4
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 5.5e-118 428.3 322 65.2
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.2e-117 427.2 329 64.4
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.1e-117 426.4 324 67.0
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.1e-117 426.4 324 67.0
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 4.7e-117 425.2 320 70.0
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 6.1e-117 424.9 321 68.8
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 8.0e-117 424.5 321 66.0
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 8.0e-117 424.5 321 68.8
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 8.0e-117 424.5 340 66.5
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 1.0e-116 424.1 343 63.6
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.8e-116 423.3 321 68.5
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.8e-116 423.3 321 68.5
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.8e-116 423.3 346 67.6
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 3.9e-116 422.2 334 67.1
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 1.1e-115 420.6 323 69.3
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 2.0e-115 419.9 321 65.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.3e-114 417.2 312 65.4
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 1.7e-114 416.8 332 68.7
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 2.2e-114 416.4 328 69.2
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 2.8e-114 416.0 331 67.4
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.1e-113 414.1 343 66.8
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 4.1e-113 412.1 325 64.3
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 5.3e-113 411.8 310 66.1
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 5.9e-112 408.3 294 68.4
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.0e-111 407.5 331 62.2
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.8e-111 405.6 323 63.2
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.2e-110 402.5 323 63.2
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.2e-110 402.5 293 69.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 7.2e-110 401.4 310 68.7
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.7e-109 399.4 317 64.0
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 8.0e-109 397.9 318 67.3
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 8.0e-109 397.9 325 66.8
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 3.0e-108 396.0 329 66.3
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 5.2e-108 395.2 321 62.0
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 8.8e-108 394.4 240 77.9
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.5e-107 393.7 289 66.4
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 4.4e-107 392.1 294 66.3
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 2.2e-106 389.8 328 66.2
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.8e-105 386.7 289 65.7
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 5.0e-103 378.6 297 66.3
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 6.5e-103 378.3 290 64.8
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.5e-102 377.1 294 65.6
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.5e-102 376.3 335 58.5
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.1e-101 373.2 293 66.2
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.6e-101 372.5 315 62.5
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.8e-100 370.2 296 70.3
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.8e-100 367.9 319 65.5
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.5e-99 367.1 261 73.6
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 5.7e-99 365.2 334 56.6
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 1.3e-98 364.0 321 63.6
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 2.2e-98 363.2 328 63.1
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 2.0e-96 356.7 294 63.6
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.3e-95 354.0 325 58.2
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 3.3e-94 349.4 218 78.0
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.4e-92 344.0 306 65.4
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.2e-91 340.9 324 59.3
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 4.9e-90 335.5 218 73.4
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 9.5e-86 321.2 323 51.1
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 5.2e-84 315.5 236 66.5
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 8.9e-84 314.7 231 69.3
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 7.5e-83 311.6 278 59.0
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 6.4e-82 308.5 257 61.5
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.6e-80 302.4 265 60.4
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.1e-77 293.5 228 66.2
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 6.4e-74 282.0 232 62.5
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 3.9e-71 272.7 294 52.7
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 9.5e-70 268.1 303 54.8
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.4e-67 259.2 140 89.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 4.4e-67 259.2 273 52.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.1e-64 250.4 158 75.9
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.0e-63 248.1 232 53.9
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.3e-63 247.7 225 58.2
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.0e-63 246.5 214 59.3
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 3.9e-63 246.1 176 63.1
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.1e-62 244.6 216 61.1
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.2e-59 234.6 222 56.3
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.2e-59 234.6 222 56.3
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 6.4e-58 228.8 196 62.8
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 4.2e-57 226.1 223 54.3
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.3e-55 221.1 236 53.8
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.9e-54 217.2 237 49.8
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.4e-52 211.1 196 60.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.8e-50 203.0 228 52.2
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 7.1e-49 198.7 136 70.6
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.2e-48 198.0 279 44.8
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.9e-47 193.0 141 68.8
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.4e-44 183.7 238 44.1
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.4e-41 174.5 114 78.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.0e-39 168.3 148 53.4
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.1e-37 160.6 257 36.2
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 3.1e-36 156.8 159 49.1
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.4e-33 147.9 187 46.5
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-33 147.9 178 47.2
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.4e-33 147.9 178 47.2
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 4.2e-33 146.4 192 44.8
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 4.2e-33 146.4 113 59.3
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.5e-30 137.1 277 43.3
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.3e-30 136.7 207 38.2
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 3.4e-27 126.7 80 77.5
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 4.2e-25 119.8 121 55.4
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.6e-24 117.9 171 46.2
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 2.7e-24 117.1 82 73.2
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 5.1e-23 112.8 116 53.4
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 1.9e-22 110.9 71 64.8
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 7.4e-22 109.0 71 63.4
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 7.4e-22 109.0 66 69.7
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 2.8e-21 107.1 71 60.6
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 8.2e-21 105.5 105 46.7
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 5.3e-20 102.8 71 60.6
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.5e-19 101.3 71 60.6
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 2.0e-19 100.9 71 59.2
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 2.0e-19 100.9 71 59.2
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 5.9e-19 99.4 70 54.3
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 2.2e-18 97.4 308 26.9
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.4e-17 94.7 76 53.9
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.4e-17 94.7 76 53.9
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 3.0e-15 87.0 71 60.6
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-14 84.7 65 55.4
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-14 84.7 65 55.4
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 2.0e-14 84.3 110 40.0
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.8e-13 80.5 77 50.6
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 1.7e-10 71.2 103 43.7
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 4.2e-09 66.6 104 41.3
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 1.4e-07 61.6 70 47.1
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 2.3e-07 60.8 71 50.7
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.1e-06 58.5 89 43.8
Cc02_g39210 Coffea canephora HOM05D003601 ORTHO05D004896 2.0e-06 57.8 63 55.6
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 4.4e-06 56.6 136 32.4


User provided reference genes

Program Settings