Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.7e-304 1048.5 536 100.0
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.7e-281 971.5 536 93.1
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.8e-280 968.8 539 92.8
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 7.1e-274 946.8 539 91.3
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.7e-273 944.9 539 90.9
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 7.7e-260 900.2 536 86.6
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.4e-258 896.0 538 87.0
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 9.4e-258 893.3 537 87.0
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.2e-257 892.9 538 86.4
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 2.9e-251 871.7 534 85.4
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 6.1e-249 864.0 532 84.8
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 2.4e-245 852.0 534 83.1
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 7.7e-244 847.0 535 83.4
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 8.5e-243 843.6 536 81.9
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.9e-242 842.4 562 79.2
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.9e-242 842.4 541 82.6
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.7e-236 822.0 441 93.4
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.9e-227 792.0 524 78.1
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 4.2e-226 788.1 531 77.6
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 8.0e-217 757.3 513 75.0
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.4e-216 756.5 539 73.3
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.2e-215 753.4 533 72.8
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 2.9e-214 748.8 537 72.4
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 6.4e-214 747.7 536 72.2
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 8.3e-214 747.3 542 72.5
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 4.1e-213 745.0 540 72.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 5.9e-212 741.1 507 73.8
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 5.0e-211 738.0 518 73.2
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.1e-210 736.9 527 73.2
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 2.8e-209 732.3 517 73.1
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 6.2e-209 731.1 445 81.6
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.4e-208 729.9 477 77.8
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.8e-208 729.6 531 72.1
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 2.3e-208 729.2 531 72.1
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.1e-208 728.8 445 81.3
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.2e-208 728.0 532 71.6
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 8.9e-208 727.2 520 72.7
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.2e-207 726.9 505 74.1
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.5e-207 726.5 456 79.8
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 4.4e-207 724.9 517 72.5
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 5.8e-207 724.5 530 71.3
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 7.5e-207 724.2 524 72.1
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 7.5e-207 724.2 538 71.6
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 7.5e-207 724.2 439 81.1
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 7.5e-207 724.2 522 72.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 7.5e-207 724.2 522 71.5
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 9.8e-207 723.8 514 72.8
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 9.8e-207 723.8 487 75.6
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.2e-206 722.6 559 67.8
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 2.9e-206 722.2 472 76.5
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.9e-205 719.5 498 74.5
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.4e-205 719.2 441 80.7
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 4.1e-205 718.4 526 70.9
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 7.0e-205 717.6 461 77.0
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.2e-204 716.8 460 77.2
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.2e-204 716.8 535 69.3
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.0e-204 716.1 435 81.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 2.7e-204 715.7 408 91.7
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.7e-204 715.7 526 70.5
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 4.6e-204 714.9 535 69.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 7.8e-204 714.1 505 72.7
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.7e-203 713.0 523 71.1
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.7e-203 713.0 490 74.5
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.9e-203 711.8 528 70.6
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 6.6e-203 711.1 436 80.5
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 6.6e-203 711.1 506 72.5
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 6.6e-203 711.1 505 72.7
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.1e-202 710.3 433 80.4
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.9e-202 709.5 435 80.0
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.5e-202 709.1 438 79.2
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.6e-202 708.0 446 78.3
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 9.5e-202 707.2 448 78.1
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.2e-201 706.8 455 76.5
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.8e-201 705.7 490 73.7
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 2.8e-201 705.7 488 73.2
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.4e-200 703.4 541 68.8
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.3e-200 702.6 531 69.7
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.3e-200 702.6 446 77.8
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 2.0e-199 699.5 444 77.7
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.0e-199 699.5 450 76.7
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.4e-199 698.7 527 69.4
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 7.5e-199 697.6 495 70.7
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 7.5e-199 697.6 495 70.7
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 7.5e-199 697.6 418 80.9
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 7.5e-199 697.6 526 68.8
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 2.9e-198 695.7 529 69.0
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 4.9e-198 694.9 440 76.4
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.4e-197 693.3 532 69.9
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.4e-197 693.3 557 66.4
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.4e-197 692.6 521 68.9
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 5.4e-197 691.4 469 73.8
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.2e-197 690.6 442 78.1
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.2e-196 690.3 443 77.2
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.3e-195 686.0 426 78.9
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 3.0e-195 685.6 437 76.4
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 3.9e-195 685.3 456 74.3
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 8.6e-195 684.1 426 78.4
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.6e-195 684.1 432 77.8
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.5e-194 683.3 439 76.3
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.5e-194 683.3 527 67.9
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 6.2e-193 677.9 505 68.9
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 8.1e-193 677.6 490 70.4
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.4e-192 676.8 487 70.6
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 4.0e-192 675.2 525 66.3
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.8e-190 668.7 469 70.8
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 7.8e-188 661.0 432 73.8
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.3e-186 655.2 490 70.0
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.1e-184 650.6 536 65.3
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.8e-184 649.8 540 64.8
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 8.9e-184 647.5 526 65.6
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 5.8e-183 644.8 463 72.1
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.4e-181 640.2 403 78.7
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.1e-181 637.9 444 69.8
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.8e-180 634.4 456 68.6
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.0e-179 634.0 489 67.5
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 8.7e-179 630.9 426 71.6
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 1.1e-178 630.6 510 62.9
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 7.6e-175 617.8 408 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 3.6e-169 599.0 432 68.1
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 9.6e-162 574.3 366 76.0
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 5.3e-152 542.0 324 81.8
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.5e-146 523.9 426 62.4
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.4e-144 516.5 398 70.1
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 5.0e-142 508.8 432 61.1
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 8.8e-139 498.0 451 58.1
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.7e-138 495.4 297 82.2
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 4.8e-137 492.3 328 74.1
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 6.9e-136 488.4 302 78.5
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.8e-131 471.5 299 79.3
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 2.0e-122 443.7 424 57.3
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.1e-120 438.0 277 76.5
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.8e-120 437.2 299 73.9
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.0e-115 419.9 260 80.8
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.5e-106 391.0 437 47.6
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 3.7e-97 359.8 242 75.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 7.3e-93 345.5 434 44.5
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.2e-75 286.2 173 79.2
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.0e-74 284.3 355 44.8
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 4.9e-65 253.1 197 71.1
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 4.8e-60 236.5 197 68.0
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 4.8e-60 236.5 175 74.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 6.2e-60 236.1 161 82.0
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 3.1e-59 233.8 195 67.7
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.4e-56 224.9 175 72.0
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.3e-52 211.8 197 63.5
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.8e-52 210.7 186 62.9
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.2e-49 201.1 135 69.6
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 6.7e-46 189.5 180 55.6
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 2.4e-43 181.0 161 65.2
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 2.4e-43 181.0 161 65.2
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 9.0e-43 179.1 125 72.0
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 3.8e-41 173.7 120 69.2
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 4.2e-40 170.2 195 50.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.7e-36 157.1 129 60.5
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 4.8e-36 156.8 191 53.9
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.9e-33 147.5 90 81.1
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 2.5e-32 144.4 94 68.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 4.7e-23 113.6 78 69.2
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 2.0e-21 108.2 259 31.3
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 8.5e-17 92.8 82 63.4
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.6e-15 88.6 79 60.8
BcaB03g13286 Brassica carinata HOM05D000974 ORTHO05D091645 6.7e-06 56.6 28 96.4


User provided reference genes

Program Settings