Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12984 Brassica carinata HOM05D013429 ORTHO05D003021 2.4e-88 328.9 180 100.0
BcaC08g44311 Brassica carinata HOM05D013429 ORTHO05D003021 4.3e-74 281.6 185 79.5
C06p17340 Brassica napus HOM05D013429 ORTHO05D003021 4.3e-74 281.6 185 79.5
BolC6t36930H Brassica oleracea HOM05D013429 ORTHO05D003021 4.3e-74 281.6 185 79.5
A05p16510 Brassica napus HOM05D013429 ORTHO05D003021 3.4e-63 245.4 167 81.4
BraA05t20556Z Brassica rapa HOM05D013429 ORTHO05D003021 2.2e-62 242.7 167 80.8
Thhalv10026311m.g Eutrema salsugineum HOM05D013429 ORTHO05D003021 1.2e-60 236.9 188 70.7
Sp7g10760 Schrenkiella parvula HOM05D013429 ORTHO05D003021 2.2e-57 226.1 192 72.9
AL9U10630 Arabidopsis lyrata HOM05D013429 ORTHO05D003021 9.7e-50 200.7 190 61.6
AT3G24535 Arabidopsis thaliana HOM05D013429 ORTHO05D003021 9.7e-50 200.7 196 62.2
CARHR218750 Cardamine hirsuta HOM05D013429 ORTHO05D003021 8.5e-46 187.6 186 67.7
Carub.0007s2939 Capsella rubella HOM05D013429 ORTHO05D003021 2.0e-42 176.4 189 58.2
THA.LOC104804590 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 3.4e-26 122.5 170 44.7
THA.LOC109116490 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 1.8e-16 90.1 169 37.9
CSS0043954 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 2.3e-14 83.2 213 31.5
Sed0005249 Sechium edule HOM05D002997 ORTHO05D003021 3.0e-14 82.8 185 29.7
TPR.G13701 Trifolium pratense HOM05D002997 ORTHO05D003021 5.0e-14 82.0 176 35.8
CSS0030169 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 8.6e-14 81.3 213 31.0
Ah.14g082050 Amaranthus hybridus HOM05D002997 ORTHO05D003021 1.1e-13 80.9 215 32.6
Haze_25717 Corylus avellana HOM05D002997 ORTHO05D003021 1.1e-13 80.9 161 35.4
RcHm_v2.0_Chr2g0090421 Rosa chinensis HOM05D002997 ORTHO05D003021 3.3e-13 79.3 195 33.3
TPR.G21686 Trifolium pratense HOM05D002997 ORTHO05D003021 3.3e-13 79.3 198 33.3
Duzib187G1185 Durio zibethinus HOM05D002997 ORTHO05D003021 4.3e-13 79.0 199 33.7
Ca_17338_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 5.6e-13 78.6 190 33.7
Medtr8g103530 Medicago truncatula HOM05D002997 ORTHO05D003021 7.3e-13 78.2 204 37.3
MD02G1046500 Malus domestica HOM05D002997 ORTHO05D003021 9.5e-13 77.8 206 32.0
EL10Ac8g18495 Beta vulgaris HOM05D002997 ORTHO05D003021 1.6e-12 77.0 210 31.4
Prupe.7G231300 Prunus persica HOM05D002997 ORTHO05D003021 1.6e-12 77.0 232 28.9
Dinv41605 Davidia involucrata HOM05D002997 ORTHO05D003021 2.8e-12 76.3 214 31.3
Gohir.D07G005700 Gossypium hirsutum HOM05D002997 ORTHO05D003021 2.8e-12 76.3 188 31.9
Gorai.001G005300 Gossypium raimondii HOM05D002997 ORTHO05D003021 2.8e-12 76.3 188 31.9
MD15G1184700 Malus domestica HOM05D002997 ORTHO05D003021 2.8e-12 76.3 203 32.0
Ciclev10009432m.g Citrus clementina HOM05D002997 ORTHO05D003021 3.6e-12 75.9 202 29.2
Lj2g0000274 Lotus japonicus HOM05D002997 ORTHO05D003021 3.6e-12 75.9 200 31.0
Medtr6g086915 Medicago truncatula HOM05D002997 ORTHO05D003021 3.6e-12 75.9 172 31.4
Lj4g0026369 Lotus japonicus HOM05D002997 ORTHO05D003021 1.1e-11 74.3 220 30.0
CiPaw.03G231900 Carya illinoinensis HOM05D002997 ORTHO05D003021 1.4e-11 73.9 237 28.7
TWI32G0809 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 4.0e-11 72.4 171 33.9
FAN19G1659 Fragaria x ananassa HOM05D002997 ORTHO05D003021 5.2e-11 72.0 195 30.3
Glyma.09G190800 Glycine max HOM05D002997 ORTHO05D003021 5.2e-11 72.0 238 29.4
Gohir.A06G062800 Gossypium hirsutum HOM05D002997 ORTHO05D003021 5.2e-11 72.0 186 33.3
Gohir.A07G006300 Gossypium hirsutum HOM05D002997 ORTHO05D003021 5.2e-11 72.0 187 31.0
QL02p085284 Quercus lobata HOM05D002997 ORTHO05D003021 5.2e-11 72.0 218 28.9
TAR636G2256 Trochodendron aralioides HOM05D002997 ORTHO05D003021 6.8e-11 71.6 198 31.3
Eucgr.C01041 Eucalyptus grandis HOM05D002997 ORTHO05D003021 8.9e-11 71.2 214 27.6
FvH4_1g04790 Fragaria vesca HOM05D002997 ORTHO05D003021 8.9e-11 71.2 195 29.7
AUR62010993 Chenopodium quinoa HOM05D002997 ORTHO05D003021 1.5e-10 70.5 251 29.1
FAN26G0466 Fragaria x ananassa HOM05D002997 ORTHO05D003021 1.5e-10 70.5 195 29.7
Glyma.05G231000 Glycine max HOM05D002997 ORTHO05D003021 2.0e-10 70.1 221 30.8
Phvul.004G163500 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 2.0e-10 70.1 232 30.2
Sed0009770 Sechium edule HOM05D002997 ORTHO05D003021 2.0e-10 70.1 162 32.1
MELO3C025342.2 Cucumis melo HOM05D002997 ORTHO05D003021 2.6e-10 69.7 177 29.9
TWI63G1630 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 2.6e-10 69.7 166 31.3
VMungo0251G2794 Vigna mungo HOM05D002997 ORTHO05D003021 3.4e-10 69.3 188 31.4
TAR624G0694 Trochodendron aralioides HOM05D002997 ORTHO05D003021 4.4e-10 68.9 190 31.1
Cpa.g.sc23.107 Carica papaya HOM05D002997 ORTHO05D003021 7.5e-10 68.2 172 34.3
Cfa003255 Carpinus fangiana HOM05D002997 ORTHO05D003021 7.5e-10 68.2 165 30.9
FAN28G0775 Fragaria x ananassa HOM05D002997 ORTHO05D003021 7.5e-10 68.2 198 29.3
Psat1g042720 Pisum sativum HOM05D002997 ORTHO05D003021 7.5e-10 68.2 170 30.6
Rhsim01G0094800 Rhododendron simsii HOM05D002997 ORTHO05D003021 7.5e-10 68.2 191 30.9
AUR62021504 Chenopodium quinoa HOM05D002997 ORTHO05D003021 2.2e-09 66.6 232 29.7
MSTRG.22676 Avicennia marina HOM05D002997 ORTHO05D003021 2.9e-09 66.2 190 30.5
Glyma.08G038500 Glycine max HOM05D002997 ORTHO05D003021 2.9e-09 66.2 224 29.9
Lalb_Chr22g0352801 Lupinus albus HOM05D002997 ORTHO05D003021 2.9e-09 66.2 196 32.1
Thecc.09G110100 Theobroma cacao HOM05D002997 ORTHO05D003021 4.9e-09 65.5 209 30.1
VMungo0464G1542 Vigna mungo HOM05D002997 ORTHO05D003021 6.4e-09 65.1 215 28.8
CSS0013816 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 1.1e-08 64.3 194 28.4
Glyma.07G086100 Glycine max HOM05D002997 ORTHO05D003021 1.1e-08 64.3 235 27.2
Manes.16G115900 Manihot esculenta HOM05D002997 ORTHO05D003021 1.1e-08 64.3 217 26.3
Lalb_Chr14g0371511 Lupinus albus HOM05D002997 ORTHO05D003021 1.4e-08 63.9 194 28.9
CSS0045808 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 2.4e-08 63.2 156 32.1
CiPaw.02G150100 Carya illinoinensis HOM05D002997 ORTHO05D003021 2.4e-08 63.2 209 30.1
Nn2g11740 Nelumbo nucifera HOM05D002997 ORTHO05D003021 2.4e-08 63.2 210 28.1
Phvul.002G313100 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 2.4e-08 63.2 193 31.6
Potri.018G080001 Populus trichocarpa HOM05D002997 ORTHO05D003021 3.2e-08 62.8 224 28.6
Rhsim12G0199200 Rhododendron simsii HOM05D002997 ORTHO05D003021 3.2e-08 62.8 186 29.6
Aqoxy7G01663 Aquilegia oxysepala HOM05D002997 ORTHO05D003021 4.1e-08 62.4 191 30.4
ECA232G1479 Erigeron canadensis HOM05D002997 ORTHO05D003021 7.0e-08 61.6 178 28.1
Oeu028166.1 Olea europaea HOM05D002997 ORTHO05D003021 7.0e-08 61.6 178 28.1
Sc18g0001230 Simmondsia chinensis HOM05D002997 ORTHO05D003021 7.0e-08 61.6 219 26.9
COL.COLO4_34929 Corchorus olitorius HOM05D002997 ORTHO05D003021 9.2e-08 61.2 70 47.1
Eucgr.J02977 Eucalyptus grandis HOM05D002997 ORTHO05D003021 9.2e-08 61.2 214 29.9
HanXRQChr10g0318581 Helianthus annuus HOM05D002997 ORTHO05D003021 9.2e-08 61.2 167 29.9
Sabra18G0067900 Salix brachista HOM05D002997 ORTHO05D003021 9.2e-08 61.2 221 26.7
Sopen07g012440 Solanum pennellii HOM05D002997 ORTHO05D003021 9.2e-08 61.2 154 33.1
Oeu033502.1 Olea europaea HOM05D002997 ORTHO05D003021 1.2e-07 60.8 184 29.9
Atru.chr7.1352 Acer truncatum HOM05D002997 ORTHO05D003021 1.6e-07 60.5 70 44.3
HanXRQChr09g0275181 Helianthus annuus HOM05D002997 ORTHO05D003021 1.6e-07 60.5 179 28.5
Lsat_1_v5_gn_7_40840 Lactuca sativa HOM05D002997 ORTHO05D003021 1.6e-07 60.5 156 27.6
DCAR_028709 Daucus carota HOM05D002997 ORTHO05D003021 2.0e-07 60.1 163 28.8
Migut.I00887 Erythranthe guttata HOM05D002997 ORTHO05D003021 2.0e-07 60.1 183 26.2
SEGI_23498 Sequoiadendron giganteum HOM05D002997 ORTHO05D003021 2.0e-07 60.1 96 35.4
MD09G1210900 Malus domestica HOM05D002997 ORTHO05D003021 3.5e-07 59.3 185 29.2
MD17G1193700 Malus domestica HOM05D002997 ORTHO05D003021 3.5e-07 59.3 181 29.8
Psat7g250680 Pisum sativum HOM05D002997 ORTHO05D003021 3.5e-07 59.3 197 25.9
CSS0015499 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 4.6e-07 58.9 175 29.1
Cc06_g09680 Coffea canephora HOM05D002997 ORTHO05D003021 4.6e-07 58.9 236 25.0
HanXRQChr12g0355621 Helianthus annuus HOM05D002997 ORTHO05D003021 4.6e-07 58.9 154 31.8
Lj3g0027232 Lotus japonicus HOM05D002997 ORTHO05D003021 4.6e-07 58.9 178 28.7
CSS0016234 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 6.0e-07 58.5 175 29.1
Lsat_1_v5_gn_4_102060 Lactuca sativa HOM05D002997 ORTHO05D003021 7.8e-07 58.2 183 27.9
Prupe.3G069200 Prunus persica HOM05D002997 ORTHO05D003021 7.8e-07 58.2 193 28.0
SGA_v2.0_scaffold37G14833 Striga asiatica HOM05D002997 ORTHO05D003021 7.8e-07 58.2 186 25.8
CSS0002685 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 1.3e-06 57.4 154 31.2
Lj5C59T17 Lonicera japonica HOM05D002997 ORTHO05D003021 1.3e-06 57.4 59 44.1
PGR142G3077 Punica granatum HOM05D002997 ORTHO05D003021 1.3e-06 57.4 143 30.8
Lj9P508T53 Lonicera japonica HOM05D002997 ORTHO05D003021 1.7e-06 57.0 56 46.4
MSTRG.9461 Avicennia marina HOM05D002997 ORTHO05D003021 2.3e-06 56.6 73 45.2
Medtr0147s0050 Medicago truncatula HOM05D002997 ORTHO05D003021 2.3e-06 56.6 185 28.1
Actinidia08985 Actinidia chinensis HOM05D002997 ORTHO05D003021 3.0e-06 56.2 59 47.5
AUR62016460 Chenopodium quinoa HOM05D002997 ORTHO05D003021 3.0e-06 56.2 58 46.6
Solyc03g120790.1 Solanum lycopersicum HOM05D002997 ORTHO05D003021 3.0e-06 56.2 206 24.8
FAN23G1833 Fragaria x ananassa HOM05D002997 ORTHO05D003021 3.9e-06 55.8 185 29.7
DCAR_002646 Daucus carota HOM05D002997 ORTHO05D003021 5.0e-06 55.5 181 26.0
Manes.03G020800 Manihot esculenta HOM05D002997 ORTHO05D003021 5.0e-06 55.5 54 48.1
Nn8g39177 Nelumbo nucifera HOM05D002997 ORTHO05D003021 5.0e-06 55.5 207 27.1
Sopen03g039610 Solanum pennellii HOM05D002997 ORTHO05D003021 5.0e-06 55.5 209 25.4
unitig_744.g24445 Utricularia gibba HOM05D001537 ORTHO05D008612 5.0e-06 55.5 162 30.2
EL10Ac9g22016 Beta vulgaris HOM05D001537 ORTHO05D008612 6.6e-06 55.1 53 49.1
Nitab4.5_0001948g0040 Nicotiana tabacum HOM05D002997 ORTHO05D003021 6.6e-06 55.1 57 47.4
Nitab4.5_0003351g0040 Nicotiana tabacum HOM05D001537 ORTHO05D008612 6.6e-06 55.1 67 40.3
Glyma.07G005100 Glycine max HOM05D002997 ORTHO05D003021 8.6e-06 54.7 200 28.0
Nitab4.5_0000351g0070 Nicotiana tabacum HOM05D001537 ORTHO05D008612 8.6e-06 54.7 184 24.5


User provided reference genes

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