Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 2.2e-103 379.0 199 100.0
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 1.5e-27 127.1 111 64.9
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 2.0e-27 126.7 111 64.9
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 3.4e-27 125.9 111 64.0
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 3.4e-27 125.9 111 64.0
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 4.4e-27 125.6 111 64.9
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 4.4e-27 125.6 113 65.5
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 2.2e-26 123.2 113 64.6
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 3.7e-26 122.5 113 64.6
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 2.4e-25 119.8 113 63.7
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 2.0e-24 116.7 113 61.9
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 2.0e-24 116.7 113 59.3
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 3.5e-24 115.9 113 61.1
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 1.9e-22 110.2 113 59.3
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 4.9e-18 95.5 125 47.2
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 8.3e-18 94.7 115 50.4
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 1.4e-17 94.0 115 49.6
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.4e-17 94.0 115 49.6
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 4.1e-17 92.4 113 51.3
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 4.1e-17 92.4 113 50.4
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 4.1e-17 92.4 113 51.3
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 5.4e-17 92.0 113 47.8
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 5.4e-17 92.0 95 56.8
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 7.0e-17 91.7 114 49.1
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.2e-16 90.9 95 56.8
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 2.7e-16 89.7 113 48.7
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 2.7e-16 89.7 113 47.8
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 2.7e-16 89.7 112 50.0
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 3.5e-16 89.4 114 50.9
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.5e-16 89.4 95 55.8
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 4.6e-16 89.0 115 50.4
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 7.8e-16 88.2 113 46.0
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 7.8e-16 88.2 113 46.0
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 7.8e-16 88.2 113 49.6
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 1.0e-15 87.8 114 50.9
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 1.0e-15 87.8 113 46.0
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 1.3e-15 87.4 113 46.9
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 1.3e-15 87.4 113 46.9
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 2.3e-15 86.7 114 48.2
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 2.3e-15 86.7 113 45.1
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 2.3e-15 86.7 114 47.4
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 2.3e-15 86.7 115 47.8
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 2.3e-15 86.7 115 47.8
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 3.0e-15 86.3 113 46.9
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 3.0e-15 86.3 115 47.8
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 3.9e-15 85.9 85 54.1
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 5.0e-15 85.5 112 49.1
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 5.0e-15 85.5 114 48.2
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 6.6e-15 85.1 113 44.2
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 6.6e-15 85.1 113 48.7
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 6.6e-15 85.1 100 53.0
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 6.6e-15 85.1 100 52.0
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 8.6e-15 84.7 113 47.8
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 8.6e-15 84.7 85 54.1
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 8.6e-15 84.7 114 45.6
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 1.1e-14 84.3 112 48.2
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 1.1e-14 84.3 85 48.2
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 1.5e-14 84.0 113 43.4
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 1.5e-14 84.0 113 47.8
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.5e-14 84.0 113 47.8
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.5e-14 84.0 113 47.8
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 1.5e-14 84.0 113 46.0
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 1.9e-14 83.6 112 42.9
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.9e-14 83.6 87 57.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 2.5e-14 83.2 135 44.4
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.3e-14 82.8 128 41.4
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 4.3e-14 82.4 113 45.1
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 5.6e-14 82.0 114 44.7
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 7.3e-14 81.6 113 46.9
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 9.5e-14 81.3 112 46.4
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 1.2e-13 80.9 116 43.1
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 1.2e-13 80.9 113 44.2
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 1.6e-13 80.5 116 42.2
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 1.6e-13 80.5 112 45.5
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 2.8e-13 79.7 109 46.8
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 2.8e-13 79.7 112 43.8
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 2.8e-13 79.7 113 44.2
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 3.6e-13 79.3 113 44.2
BolC8t49290H Brassica oleracea HOM05D002811 ORTHO05D003053 6.2e-13 78.6 48 89.6
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 6.2e-13 78.6 118 41.5
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 6.2e-13 78.6 118 41.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 8.0e-13 78.2 113 42.5
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.8e-12 77.0 113 43.4
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 1.8e-12 77.0 111 39.6
BcaC07g38735 Brassica carinata HOM05D002811 ORTHO05D003053 2.3e-12 76.6 46 91.3
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.3e-12 76.6 92 45.7
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 5.2e-12 75.5 114 43.9
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 6.8e-12 75.1 115 39.1
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 6.8e-12 75.1 115 39.1
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 6.8e-12 75.1 134 41.0
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 8.9e-12 74.7 115 38.3
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 1.2e-11 74.3 112 37.5
C08p16630 Brassica napus HOM05D002811 ORTHO05D003053 2.6e-11 73.2 46 89.1
C09p16160 Brassica napus HOM05D002811 ORTHO05D003053 3.4e-11 72.8 46 87.0
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 3.4e-11 72.8 111 38.7
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 4.4e-11 72.4 111 39.6
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 5.8e-11 72.0 115 37.4
BraA08t35120Z Brassica rapa HOM05D002811 ORTHO05D003053 5.8e-11 72.0 47 89.4
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 9.8e-11 71.2 109 42.2
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 6.4e-10 68.6 121 38.8
BcaB03g13099 Brassica carinata HOM05D002811 ORTHO05D003053 8.3e-10 68.2 46 84.8
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 8.3e-10 68.2 84 47.6
A08p31990 Brassica napus HOM05D002811 ORTHO05D003053 2.4e-09 66.6 47 83.0
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.0e-08 63.5 97 36.1
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.0e-08 63.5 61 59.0
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 6.0e-08 62.0 101 42.6
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 6.0e-08 62.0 108 36.1


User provided reference genes

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