Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 1.0e-182 643.3 329 100.0
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 6.3e-172 607.4 331 92.4
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 2.3e-166 589.0 331 90.6
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 7.0e-163 577.4 364 82.4
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 7.7e-162 573.9 366 82.0
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 2.2e-161 572.4 366 82.0
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 2.5e-160 568.9 331 86.4
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 7.0e-155 550.8 332 84.0
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.0e-150 537.0 332 81.6
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.0e-150 537.0 332 81.6
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.0e-150 537.0 332 81.6
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.0e-150 537.0 332 81.6
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 2.3e-150 535.8 332 81.3
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 2.3e-150 535.8 332 81.3
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 8.9e-134 480.7 347 72.6
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 2.7e-130 469.2 297 77.1
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 5.2e-110 401.7 279 67.4
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.6e-109 399.4 292 66.1
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 4.4e-109 398.7 292 66.4
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 5.8e-109 398.3 294 65.0
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 7.6e-109 397.9 294 65.0
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 1.3e-108 397.1 295 66.4
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 2.2e-108 396.4 294 65.3
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.4e-107 393.7 295 66.4
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.9e-107 393.3 294 66.0
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 2.4e-107 392.9 294 63.6
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 4.2e-107 392.1 291 63.9
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.6e-106 390.2 294 63.9
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.6e-106 390.2 295 64.7
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 4.6e-106 388.7 296 64.9
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 4.6e-106 388.7 290 64.8
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 6.0e-106 388.3 295 63.7
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 6.0e-106 388.3 299 63.2
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.0e-106 388.3 307 63.8
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.3e-105 387.1 307 63.5
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.3e-105 387.1 310 61.0
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-105 387.1 310 61.0
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 3.9e-105 385.6 295 62.0
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 2.5e-104 382.9 296 63.5
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 3.3e-104 382.5 289 62.3
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 4.3e-104 382.1 294 62.2
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.3e-104 382.1 306 63.4
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.3e-104 382.1 310 60.3
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 7.3e-104 381.3 294 62.2
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 1.6e-103 380.2 297 59.9
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.6e-103 380.2 297 60.3
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 2.8e-103 379.4 286 62.9
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 2.8e-103 379.4 295 60.3
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 4.8e-103 378.6 297 60.3
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.8e-102 376.7 297 58.9
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.1e-102 375.9 297 58.9
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 3.1e-102 375.9 297 60.9
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 4.0e-102 375.6 292 62.3
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 6.9e-102 374.8 301 59.8
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.5e-101 373.6 297 59.3
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.5e-101 373.6 302 62.6
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 3.8e-100 369.0 324 57.4
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.4e-99 367.1 297 58.9
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.2e-99 365.9 289 61.9
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 4.2e-99 365.5 297 60.9
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 9.3e-99 364.4 295 59.3
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.2e-98 364.0 302 59.6
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.6e-98 363.6 294 60.9
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.6e-98 363.6 294 60.9
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.9e-97 359.0 282 61.0
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 3.9e-97 359.0 277 61.4
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.5e-96 357.1 295 59.0
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 2.5e-96 356.3 288 61.1
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 5.6e-96 355.1 298 59.1
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.2e-93 347.4 314 54.1
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 3.8e-92 342.4 311 52.7
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 3.8e-92 342.4 303 57.1
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 3.2e-91 339.3 283 58.3
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 9.3e-91 337.8 283 57.6
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.3e-89 334.0 295 55.9
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.8e-89 333.6 283 56.9
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 3.9e-89 332.4 283 56.9
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.5e-88 330.5 372 47.6
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 2.8e-87 326.2 337 50.4
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 6.9e-86 321.6 291 54.6
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 5.8e-85 318.5 284 55.3
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 3.8e-84 315.8 305 54.4
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.6e-82 310.5 232 65.1
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 4.6e-82 308.9 294 53.4
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 2.8e-79 299.7 293 50.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.2e-77 294.3 232 61.2
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.2e-77 294.3 259 56.8
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.7e-76 290.4 234 62.0
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 2.5e-75 286.6 276 55.4
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 3.9e-73 279.3 207 65.2
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 4.3e-72 275.8 276 51.1
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 3.4e-69 266.2 213 60.1
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 2.1e-66 256.9 295 49.8
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 3.9e-65 252.7 295 47.1
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 8.8e-65 251.5 242 52.1
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.7e-63 247.3 204 55.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 2.0e-61 240.4 231 51.9
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 5.9e-61 238.8 212 55.7
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 6.7e-57 225.3 236 50.0
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.4e-56 222.6 187 59.4
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.8e-55 219.2 179 59.8
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.4e-54 216.9 178 59.0
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-53 214.2 177 57.6
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.0e-53 213.8 178 57.9
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.5e-53 213.0 177 58.2
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.9e-53 212.2 177 57.6
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-52 211.1 177 57.6
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 8.0e-50 201.8 181 55.8
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.7e-48 195.7 157 59.2
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.3e-47 194.5 304 40.1
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 5.3e-46 189.1 289 41.2
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.5e-45 186.0 153 59.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.9e-43 180.6 143 71.3
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.7e-39 166.4 187 48.1
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 5.4e-38 162.5 105 70.5
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 7.0e-38 162.2 105 70.5
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.3e-36 157.1 179 48.6
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.9e-36 156.8 103 64.1
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 4.2e-35 152.9 188 46.8
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.0e-32 144.1 108 65.7
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.0e-32 144.1 102 65.7
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.8e-30 137.5 124 57.3
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.4e-30 137.1 108 62.0
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 9.2e-30 135.2 270 34.4
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 1.7e-28 131.0 286 33.6
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.6e-26 124.4 98 62.2
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 9.5e-19 98.6 77 64.9
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 9.5e-19 98.6 77 64.9
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.1e-18 97.4 56 71.4
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 2.3e-09 67.4 45 64.4
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.7e-07 61.2 38 76.3
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 3.7e-07 60.1 121 35.5


User provided reference genes

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