Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12009 Brassica carinata HOM05D000082 ORTHO05D000038 2.6e-98 362.1 186 100.0
BcaC07g39269 Brassica carinata HOM05D000082 ORTHO05D000038 1.3e-49 200.3 125 80.8
C08p22790 Brassica napus HOM05D000082 ORTHO05D000038 1.3e-49 200.3 125 80.8
BolC8t49915H Brassica oleracea HOM05D000082 ORTHO05D000038 1.3e-49 200.3 125 80.8
A08p27550 Brassica napus HOM05D000082 ORTHO05D000038 6.5e-49 198.0 125 79.2
Sp1g21990 Schrenkiella parvula HOM05D000082 ORTHO05D000038 4.2e-48 195.3 127 78.7
BcaB03g14090 Brassica carinata HOM05D000082 ORTHO05D000038 6.1e-47 191.4 127 77.2
AT1G26800 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 2.6e-45 186.0 128 75.0
AL1G38880 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 1.7e-44 183.3 128 72.7
Thhalv10009887m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 2.8e-44 182.6 135 74.1
CARHR025130 Cardamine hirsuta HOM05D000082 ORTHO05D000038 4.8e-44 181.8 128 73.4
BraA07t29083Z Brassica rapa HOM05D000082 ORTHO05D000038 6.3e-44 181.4 127 74.0
A07p13120 Brassica napus HOM05D000082 ORTHO05D000038 2.4e-43 179.5 127 73.2
Carub.0001s2417 Capsella rubella HOM05D000082 ORTHO05D000038 4.1e-43 178.7 132 71.2
BcaC06g35120 Brassica carinata HOM05D000082 ORTHO05D000038 2.6e-42 176.0 127 72.4
C07p19610 Brassica napus HOM05D000082 ORTHO05D000038 2.6e-42 176.0 144 66.7
BolC7t42478H Brassica oleracea HOM05D000082 ORTHO05D000038 2.6e-42 176.0 127 72.4
BraA08t34694Z Brassica rapa HOM05D000082 ORTHO05D000038 2.6e-42 176.0 122 76.2
Aa31LG7G8320 Aethionema arabicum HOM05D000082 ORTHO05D000038 4.8e-36 155.2 143 60.1
THA.LOC104808712 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 4.4e-29 132.1 139 53.2
THA.LOC104822911 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 2.9e-25 119.4 144 48.6
Haze_12003 Corylus avellana HOM05D000082 ORTHO05D000038 4.2e-24 115.5 135 48.1
Atru.chr11.1776 Acer truncatum HOM05D000082 ORTHO05D000038 7.2e-24 114.8 138 45.7
Duzib268G0080 Durio zibethinus HOM05D000082 ORTHO05D000038 7.2e-24 114.8 141 47.5
Cfa008971 Carpinus fangiana HOM05D000082 ORTHO05D000038 9.5e-24 114.4 129 47.3
Thecc.02G344800 Theobroma cacao HOM05D000082 ORTHO05D000038 9.5e-24 114.4 140 47.1
Duzib251G0205 Durio zibethinus HOM05D000082 ORTHO05D000038 1.2e-23 114.0 140 47.9
GSVIVG01019972001 Vitis vinifera HOM05D000082 ORTHO05D000038 4.7e-23 112.1 140 47.1
COL.COLO4_22956 Corchorus olitorius HOM05D000082 ORTHO05D000038 8.0e-23 111.3 135 45.9
Gohir.D13G075500 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.3e-22 109.8 136 47.8
Gorai.013G086200 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.2e-22 108.6 136 47.8
Potri.010G168300 Populus trichocarpa HOM05D000082 ORTHO05D000038 8.9e-22 107.8 134 46.3
Cpa.g.sc128.37 Carica papaya HOM05D000082 ORTHO05D000038 1.2e-21 107.5 135 46.7
Sabra10G0128100 Salix brachista HOM05D000082 ORTHO05D000038 5.7e-21 105.1 134 44.8
Duzib248G1345 Durio zibethinus HOM05D000082 ORTHO05D000038 7.5e-21 104.8 141 45.4
CANSAT64G0227 Cannabis sativa HOM05D000082 ORTHO05D000038 1.3e-20 104.0 142 45.8
CiPaw.05G134100 Carya illinoinensis HOM05D000082 ORTHO05D000038 1.3e-20 104.0 128 43.8
Manes.14G113900 Manihot esculenta HOM05D000082 ORTHO05D000038 1.3e-20 104.0 119 49.6
Manes.12G105400 Manihot esculenta HOM05D000082 ORTHO05D000038 2.8e-20 102.8 117 49.6
Manes.12G105500 Manihot esculenta HOM05D000082 ORTHO05D000038 2.8e-20 102.8 117 49.6
Manes.05G102000 Manihot esculenta HOM05D000082 ORTHO05D000038 3.7e-20 102.4 122 48.4
Sabra08G0065000 Salix brachista HOM05D000082 ORTHO05D000038 3.7e-20 102.4 134 44.0
Manes.01G036200 Manihot esculenta HOM05D000082 ORTHO05D000038 1.8e-19 100.1 129 46.5
Potri.008G087200 Populus trichocarpa HOM05D000082 ORTHO05D000038 2.4e-19 99.8 119 46.2
Actinidia33202 Actinidia chinensis HOM05D000082 ORTHO05D000038 3.1e-19 99.4 123 46.3
Oeu014035.1 Olea europaea HOM05D000082 ORTHO05D000038 3.1e-19 99.4 119 49.6
Ciclev10032639m.g Citrus clementina HOM05D000082 ORTHO05D000038 4.1e-19 99.0 143 42.7
Nn4g23189 Nelumbo nucifera HOM05D000082 ORTHO05D000038 4.1e-19 99.0 115 51.3
VMungo1215G1376 Vigna mungo HOM05D000082 ORTHO05D000038 4.1e-19 99.0 126 48.4
Cc00_g30280 Coffea canephora HOM05D000082 ORTHO05D000038 5.4e-19 98.6 150 43.3
Cc11_g12900 Coffea canephora HOM05D000082 ORTHO05D000038 5.4e-19 98.6 150 43.3
Lalb_Chr04g0255991 Lupinus albus HOM05D000082 ORTHO05D000038 5.4e-19 98.6 136 44.9
CSS0049187 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 1.6e-18 97.1 121 48.8
Hma1.2p1_0795F.1_g218930 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 1.6e-18 97.1 150 44.0
Psat2g118960 Pisum sativum HOM05D000082 ORTHO05D000038 2.0e-18 96.7 129 44.2
Glyma.02G108300 Glycine max HOM05D000082 ORTHO05D000038 2.7e-18 96.3 137 44.5
Medtr5g041310 Medicago truncatula HOM05D000082 ORTHO05D000038 2.7e-18 96.3 132 41.7
TAR622G0053 Trochodendron aralioides HOM05D000082 ORTHO05D000038 3.5e-18 95.9 118 48.3
Dinv16655 Davidia involucrata HOM05D000082 ORTHO05D000038 5.9e-18 95.1 114 49.1
Manes.14G114000 Manihot esculenta HOM05D000082 ORTHO05D000038 5.9e-18 95.1 117 47.0
Lj2g0016541 Lotus japonicus HOM05D000082 ORTHO05D000038 7.8e-18 94.7 137 42.3
Sabra06G0061700 Salix brachista HOM05D000470 ORTHO05D000348 1.7e-17 93.6 123 42.3
TAR374G0841 Trochodendron aralioides HOM05D000082 ORTHO05D000038 2.9e-17 92.8 120 46.7
AUR62032795 Chenopodium quinoa HOM05D000082 ORTHO05D000038 5.0e-17 92.0 117 45.3
TPR.G7140 Trifolium pratense HOM05D000082 ORTHO05D000038 5.0e-17 92.0 137 43.1
Lalb_Chr10g0098341 Lupinus albus HOM05D000082 ORTHO05D000038 6.6e-17 91.7 131 43.5
Phvul.002G084300 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 8.6e-17 91.3 127 47.2
Glyma.01G048700 Glycine max HOM05D000082 ORTHO05D000038 3.3e-16 89.4 136 44.1
Ah.03g134950 Amaranthus hybridus HOM05D000082 ORTHO05D000038 4.3e-16 89.0 152 36.8
MBI05_g34357_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 9.5e-16 87.8 161 39.1
Actinidia12286 Actinidia chinensis HOM05D000082 ORTHO05D000038 1.6e-15 87.0 123 43.1
Sed0026117 Sechium edule HOM05D000082 ORTHO05D000038 1.6e-15 87.0 130 41.5
Medtr5g041330 Medicago truncatula HOM05D000082 ORTHO05D000038 4.7e-15 85.5 90 46.7
Prupe.1G275700 Prunus persica HOM05D000082 ORTHO05D000038 6.1e-15 85.1 141 40.4
Ca_04814_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 8.0e-15 84.7 129 41.9
Sopen05g003750 Solanum pennellii HOM05D000082 ORTHO05D000038 1.0e-14 84.3 120 41.7
MD16G1071900 Malus domestica HOM05D000082 ORTHO05D000038 1.8e-14 83.6 125 41.6
PGSC0003DMG400018407 Solanum tuberosum HOM05D000082 ORTHO05D000038 1.8e-14 83.6 120 42.5
Ah.02g129650 Amaranthus hybridus HOM05D000082 ORTHO05D000038 2.3e-14 83.2 151 36.4
QL03p068727 Quercus lobata HOM05D000082 ORTHO05D000038 2.3e-14 83.2 136 39.7
TWI79G0903 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 3.1e-14 82.8 124 44.4
Lsat_1_v5_gn_8_52720 Lactuca sativa HOM05D000082 ORTHO05D000038 4.0e-14 82.4 86 51.2
Sc04g0008050 Simmondsia chinensis HOM05D000082 ORTHO05D000038 4.0e-14 82.4 120 41.7
TAR629G2341 Trochodendron aralioides HOM05D000082 ORTHO05D000038 6.8e-14 81.6 116 46.6
Dinv34146 Davidia involucrata HOM05D021922 ORTHO05D000038 8.9e-14 81.3 114 43.0
Lj6P786T60 Lonicera japonica HOM05D000082 ORTHO05D000038 8.9e-14 81.3 125 44.0
Nitab4.5_0000040g0270 Nicotiana tabacum HOM05D000082 ORTHO05D000038 1.2e-13 80.9 157 39.5
Dinv11520 Davidia involucrata HOM05D000082 ORTHO05D000038 1.5e-13 80.5 112 43.8
EL10Ac6g13218 Beta vulgaris HOM05D000082 ORTHO05D000038 2.0e-13 80.1 151 35.8
Nitab4.5_0003995g0030 Nicotiana tabacum HOM05D000082 ORTHO05D000038 2.6e-13 79.7 150 41.3
A09p40230 Brassica napus HOM05D000082 ORTHO05D000038 3.4e-13 79.3 66 62.1
BraA09t39521Z Brassica rapa HOM05D000082 ORTHO05D000038 3.4e-13 79.3 66 62.1
Migut.L01280 Erythranthe guttata HOM05D000082 ORTHO05D000038 3.4e-13 79.3 129 34.9
PSO013G0197 Papaver somniferum HOM05D000082 ORTHO05D000038 7.5e-13 78.2 140 41.4
Psat2g119120 Pisum sativum HOM05D000082 ORTHO05D000038 7.5e-13 78.2 140 37.9
Psat2g119160 Pisum sativum HOM05D000082 ORTHO05D000038 7.5e-13 78.2 140 37.9
PSO832G1690 Papaver somniferum HOM05D000082 ORTHO05D000038 4.9e-12 75.5 144 39.6
Aqoxy3G03412 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 6.4e-12 75.1 155 35.5
Sc11g0001970 Simmondsia chinensis HOM05D000082 ORTHO05D000038 8.3e-12 74.7 119 41.2
Aqoxy1G04213 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 1.1e-11 74.3 154 35.1
Aqoxy1G04214 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 1.1e-11 74.3 154 35.1
MD13G1071200 Malus domestica HOM05D000082 ORTHO05D000038 1.1e-11 74.3 158 38.0
unitig_22.g6512 Utricularia gibba HOM05D000082 ORTHO05D000038 1.1e-11 74.3 81 46.9
RcHm_v2.0_Chr4g0439691 Rosa chinensis HOM05D000082 ORTHO05D000038 1.9e-11 73.6 134 35.8
Peaxi162Scf00222g00058 Petunia axillaris HOM05D000082 ORTHO05D000038 2.4e-11 73.2 113 42.5
Sabra18G0047900 Salix brachista HOM05D000082 ORTHO05D000038 2.4e-11 73.2 80 47.5
Sabra07G0096400 Salix brachista HOM05D000082 ORTHO05D000038 4.1e-11 72.4 68 54.4
CDE04G1399 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 9.2e-11 71.2 105 40.0
MSTRG.23931 Avicennia marina HOM05D000082 ORTHO05D000038 2.0e-10 70.1 100 41.0
Eucgr.G02496 Eucalyptus grandis HOM05D000082 ORTHO05D000038 3.5e-10 69.3 107 41.1
ECA233G0444 Erigeron canadensis HOM05D001838 ORTHO05D001919 7.8e-10 68.2 93 39.8
Cc07_g03450 Coffea canephora HOM05D000082 ORTHO05D000038 2.3e-09 66.6 98 39.8
Lsat_1_v5_gn_1_71221 Lactuca sativa HOM05D000082 ORTHO05D000038 2.3e-09 66.6 157 29.9
PGR102G0748 Punica granatum HOM05D000082 ORTHO05D000038 2.3e-09 66.6 124 37.9
Oeu010951.1 Olea europaea HOM05D000082 ORTHO05D000038 3.9e-09 65.9 126 33.3
CSS0018928 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 5.0e-09 65.5 132 37.9
HanXRQChr08g0210911 Helianthus annuus HOM05D000082 ORTHO05D000038 5.0e-09 65.5 84 41.7
CSS0004250 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 8.6e-09 64.7 110 40.0
DCAR_007158 Daucus carota HOM05D000082 ORTHO05D000038 8.6e-09 64.7 80 50.0
FAN17G2074 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.6e-09 64.7 119 35.3
Hma1.2p1_0409F.1_g146910 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 8.6e-09 64.7 110 42.7
Sed0015714 Sechium edule HOM05D000082 ORTHO05D000038 1.1e-08 64.3 116 37.1
ClCG05G024210 Citrullus lanatus HOM05D000082 ORTHO05D000038 1.5e-08 63.9 123 37.4
FAN07G0621 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.5e-08 63.9 119 35.3
Actinidia38768 Actinidia chinensis HOM05D001951 ORTHO05D000038 2.5e-08 63.2 130 37.7
Migut.H00930 Erythranthe guttata HOM05D000082 ORTHO05D000038 5.6e-08 62.0 123 34.1
CsaV3_5G038090 Cucumis sativus L. HOM05D000082 ORTHO05D000038 7.3e-08 61.6 102 39.2
MELO3C012103.2 Cucumis melo HOM05D000082 ORTHO05D000038 9.5e-08 61.2 123 32.5
TAR633G0839 Trochodendron aralioides HOM05D000082 ORTHO05D000038 9.5e-08 61.2 169 32.5
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 1.2e-07 60.8 102 39.2
CARHR014610 Cardamine hirsuta HOM05D000082 ORTHO05D000038 1.6e-07 60.5 125 32.8
ClCG09G018180 Citrullus lanatus HOM05D000082 ORTHO05D000038 1.6e-07 60.5 118 36.4
ATR0564G158 Amborella trichopoda HOM05D000082 ORTHO05D000038 2.1e-07 60.1 120 34.2
FvH4_4g31250 Fragaria vesca HOM05D000082 ORTHO05D000038 2.1e-07 60.1 77 40.3
FAN12G0656 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.1e-07 60.1 77 40.3
FAN22G1269 Fragaria x ananassa HOM05D000082 ORTHO05D000038 2.8e-07 59.7 79 41.8
Oeu015422.1 Olea europaea HOM05D000082 ORTHO05D000038 2.8e-07 59.7 79 40.5
Psat2g119080 Pisum sativum HOM05D000082 ORTHO05D000038 2.8e-07 59.7 113 34.5
CsaV3_5G032780 Cucumis sativus L. HOM05D000082 ORTHO05D000038 3.6e-07 59.3 123 31.7
Gohir.A13G075300 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.7e-07 58.9 67 47.8
Oeu021383.1 Olea europaea HOM05D000082 ORTHO05D000038 4.7e-07 58.9 97 34.0
Lsat_1_v5_gn_2_50720 Lactuca sativa HOM05D000082 ORTHO05D000038 6.2e-07 58.5 121 32.2
Hma1.2p1_1477F.1_g285870 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 8.0e-07 58.2 69 50.7
Sabra06G0130800 Salix brachista HOM05D000082 ORTHO05D000038 1.1e-06 57.8 68 44.1
SGA_v2.0_scaffold389G50558 Striga asiatica HOM05D000082 ORTHO05D000038 1.1e-06 57.8 122 33.6
SGA_v2.0_scaffold53G19335 Striga asiatica HOM05D000082 ORTHO05D000038 1.1e-06 57.8 112 33.0
THA.LOC104805165 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 1.1e-06 57.8 116 30.2
ClCG02G024470 Citrullus lanatus HOM05D000082 ORTHO05D000038 1.4e-06 57.4 114 34.2
HanXRQChr01g0021501 Helianthus annuus HOM05D000082 ORTHO05D000038 1.4e-06 57.4 107 31.8
Lsat_1_v5_gn_6_56101 Lactuca sativa HOM05D000082 ORTHO05D000038 1.4e-06 57.4 162 29.6
Sed0024247 Sechium edule HOM05D000082 ORTHO05D000038 2.3e-06 56.6 114 34.2
A06p10180 Brassica napus HOM05D000082 ORTHO05D000038 3.1e-06 56.2 129 33.3
Sabra06G0078700 Salix brachista HOM05D000082 ORTHO05D000038 3.1e-06 56.2 68 44.1
SGA_v2.0_scaffold413G51195 Striga asiatica HOM05D000082 ORTHO05D000038 4.0e-06 55.8 79 41.8
AT5G56340 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 5.2e-06 55.5 122 28.7
TAR623G0508 Trochodendron aralioides HOM05D000082 ORTHO05D000038 5.2e-06 55.5 99 38.4
Solyc05g007895.1 Solanum lycopersicum HOM05D000082 ORTHO05D000038 6.8e-06 55.1 62 45.2
Lsat_1_v5_gn_4_60681 Lactuca sativa HOM05D021922 ORTHO05D000038 8.9e-06 54.7 68 44.1
Sabra14G0145100 Salix brachista HOM05D000082 ORTHO05D000038 8.9e-06 54.7 68 44.1


User provided reference genes

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