Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1338.2 673 100.0
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1259.2 677 93.9
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1256.9 677 93.9
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1249.2 677 93.8
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1248.4 677 93.8
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1227.6 677 92.2
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1214.9 633 95.4
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1214.1 633 95.4
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1214.1 633 95.4
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1214.1 633 95.4
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1209.9 633 94.9
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1209.5 633 95.1
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1209.1 633 94.9
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1208.7 633 94.9
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1204.1 635 93.9
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1202.6 633 94.2
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1199.9 636 93.6
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1198.7 635 93.2
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1196.0 633 93.8
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 633 89.3
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1137.1 632 88.0
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 638 87.8
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 630 87.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 638 86.4
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 637 86.8
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 630 88.3
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 637 86.8
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 642 86.0
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 635 86.6
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1129.4 637 86.5
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1129.0 637 87.3
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1129.0 636 86.8
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 680 82.1
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 634 86.0
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 637 86.3
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 635 87.1
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 630 86.7
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 629 87.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 672 82.9
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 630 87.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 635 86.1
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 632 86.9
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 630 87.1
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 635 85.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 637 86.3
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 640 85.5
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 630 87.0
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 630 86.7
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 637 86.3
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 640 86.4
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 634 86.4
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 635 86.1
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 635 86.8
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 637 85.9
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 642 85.4
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 630 86.8
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 635 86.6
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 635 86.6
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 635 86.0
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 632 86.9
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 642 85.7
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 634 86.1
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1119.4 637 86.0
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 630 86.2
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 632 86.9
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 637 85.9
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 637 85.7
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 631 86.5
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 666 83.0
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 635 85.8
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 630 86.0
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 630 86.3
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1116.7 632 86.7
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1116.3 637 85.9
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 630 86.3
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1115.5 637 85.6
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1115.1 632 85.9
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1114.8 666 82.7
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1114.0 647 84.1
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1112.8 658 81.9
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1112.1 657 83.9
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1111.3 640 84.7
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1110.5 629 85.7
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 632 85.6
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 637 85.9
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1107.4 640 85.3
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1107.0 632 85.3
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1103.6 630 85.9
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1101.7 637 84.1
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1099.3 643 82.9
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1098.6 637 84.0
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1095.1 630 84.3
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1094.7 635 85.2
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 631 85.3
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1087.4 640 83.6
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1084.7 634 84.2
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1083.9 637 83.5
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 7.3e-308 1060.1 635 81.3
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 9.5e-308 1059.7 628 82.5
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 2.0e-305 1052.0 628 81.2
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.7e-304 1048.9 582 88.3
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 3.2e-303 1044.6 640 81.4
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.4e-298 1029.2 630 79.8
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.6e-289 998.4 632 76.7
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.6e-278 962.6 534 88.0
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.5e-276 956.1 541 86.9
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.2e-275 953.0 534 86.5
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 7.1e-271 937.2 642 73.1
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.8e-267 925.2 629 73.3
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 4.0e-266 921.4 653 71.5
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 4.8e-259 897.9 637 71.7
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 3.8e-256 888.3 534 82.6
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 6.5e-240 834.3 635 69.0
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 3.2e-239 832.0 503 81.7
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 7.4e-236 820.8 503 80.5
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 8.2e-235 817.4 646 64.4
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 2.0e-233 812.8 497 80.9
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 2.5e-231 805.8 636 66.8
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.1e-223 780.4 638 61.6
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 2.3e-197 693.0 444 77.5
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.1e-189 666.0 535 66.7
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 4.3e-183 645.6 638 52.8
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.3e-173 613.2 446 70.6
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.1e-173 612.8 354 84.5
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.2e-161 574.3 404 73.8
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 9.3e-154 548.1 315 86.0
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.9e-147 526.6 274 94.9
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 7.9e-145 518.5 293 86.7
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 3.9e-112 409.8 515 43.5
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 8.5e-91 339.0 201 82.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.1e-85 320.5 250 65.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 5.0e-83 313.2 188 84.0
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 3.3e-82 310.5 231 68.4
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 8.6e-75 285.8 162 84.0
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 9.5e-74 282.3 163 84.7
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.5e-66 257.7 630 31.7
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.8e-56 224.9 273 47.6
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.4e-48 198.0 229 50.7
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 5.3e-40 170.2 106 81.1
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 9.0e-40 169.5 108 78.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.2e-39 169.1 104 77.9
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 3.4e-39 167.5 99 82.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.6e-36 158.7 86 84.9
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 2.1e-36 158.3 90 87.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 4.6e-36 157.1 156 58.3
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.0e-35 156.0 74 98.6
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 2.8e-33 147.9 127 62.2
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.5e-31 142.1 91 76.9
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 2.0e-31 141.7 91 76.9
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 4.2e-21 107.5 53 96.2
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 7.1e-21 106.7 116 52.6
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.7e-20 104.8 63 79.4
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.3e-17 95.9 51 88.2
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 6.3e-17 93.6 60 75.0
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.2e-15 89.4 72 59.7
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.0e-14 86.3 49 79.6
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 2.3e-11 75.1 56 60.7
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.6e-09 68.9 65 52.3


User provided reference genes

Program Settings