Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 3.2e-40 167.9 82 100.0
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 7.9e-23 110.2 53 100.0
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 7.9e-23 110.2 53 100.0
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 7.9e-23 110.2 53 100.0
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 7.9e-23 110.2 53 100.0
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 7.9e-23 110.2 53 100.0
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 7.9e-23 110.2 53 100.0
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 7.9e-23 110.2 53 100.0
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 7.9e-23 110.2 53 100.0
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 1.8e-22 109.0 53 98.1
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 1.8e-22 109.0 53 98.1
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 1.8e-22 109.0 53 98.1
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.8e-22 109.0 53 98.1
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 1.8e-22 109.0 53 98.1
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 1.8e-22 109.0 53 98.1
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 1.8e-22 109.0 53 98.1
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 1.8e-22 109.0 53 98.1
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 2.3e-22 108.6 53 96.2
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 2.3e-22 108.6 53 96.2
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 3.9e-22 107.8 53 96.2
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 5.1e-22 107.5 53 98.1
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 5.1e-22 107.5 53 94.3
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 5.1e-22 107.5 53 98.1
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 5.1e-22 107.5 53 98.1
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 5.1e-22 107.5 53 98.1
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 5.1e-22 107.5 53 94.3
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 5.1e-22 107.5 53 98.1
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 5.1e-22 107.5 53 94.3
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 6.7e-22 107.1 53 92.5
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 6.7e-22 107.1 53 92.5
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 6.7e-22 107.1 53 92.5
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 6.7e-22 107.1 53 96.2
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 92.5
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 92.5
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 1.1e-21 106.3 53 96.2
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 1.5e-21 105.9 53 94.3
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.9e-21 105.5 53 96.2
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 1.9e-21 105.5 53 92.5
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.9e-21 105.5 53 92.5
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.9e-21 105.5 53 92.5
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 1.9e-21 105.5 53 92.5
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 1.9e-21 105.5 53 92.5
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 1.9e-21 105.5 53 92.5
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 1.9e-21 105.5 53 92.5
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.5e-21 105.1 53 94.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 2.5e-21 105.1 53 94.3
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 2.5e-21 105.1 53 94.3
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.5e-21 105.1 53 92.5
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 2.5e-21 105.1 53 96.2
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 2.5e-21 105.1 53 94.3
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 2.5e-21 105.1 53 96.2
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 94.3
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 3.3e-21 104.8 53 92.5
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 4.3e-21 104.4 53 90.6
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 5.6e-21 104.0 53 92.5
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 5.6e-21 104.0 53 92.5
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 7.4e-21 103.6 53 90.6
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 7.4e-21 103.6 53 92.5
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 9.6e-21 103.2 53 94.3
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.6e-21 103.2 53 90.6
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 9.6e-21 103.2 53 88.7
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 9.6e-21 103.2 53 94.3
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 1.3e-20 102.8 53 88.7
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.3e-20 102.8 53 86.8
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 2.8e-20 101.7 53 90.6
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 2.8e-20 101.7 53 88.7
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 2.8e-20 101.7 53 88.7
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.8e-20 101.7 53 88.7
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 2.8e-20 101.7 53 88.7
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 3.7e-20 101.3 53 88.7
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 4.8e-20 100.9 53 90.6
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 8.1e-20 100.1 53 86.8
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.1e-19 99.8 53 88.7
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.4e-19 99.4 53 84.9
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 4.0e-19 97.8 53 86.8
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 3.4e-18 94.7 53 84.9
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.9e-17 91.7 53 75.5
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.9e-17 90.9 51 86.3
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 4.2e-16 87.8 53 77.4
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 8.2e-12 73.6 59 61.0
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 3.8e-09 64.7 35 82.9
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 2.5e-08 62.0 53 50.9
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 3.0e-06 55.1 53 58.5


User provided reference genes

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