Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11098 Brassica carinata HOM05D009194 ORTHO05D093258 1.3e-185 652.9 336 100.0
CiPaw.07G021800 Carya illinoinensis HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
CiPaw.08G161700 Carya illinoinensis HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
DCAR_003358 Daucus carota HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
Dinv30813 Davidia involucrata HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
Dinv40336 Davidia involucrata HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
Lalb_Chr18g0045781 Lupinus albus HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
Lalb_Chr21g0310591 Lupinus albus HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
QL03p020155 Quercus lobata HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
GSVIVG01031137001 Vitis vinifera HOM05D000070 ORTHO05D004358 1.1e-09 68.6 37 86.5
Atru.chr2.72 Acer truncatum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Actinidia21497 Actinidia chinensis HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Aa31LG5G15850 Aethionema arabicum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Ah.04g161160 Amaranthus hybridus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Ah.06g189820 Amaranthus hybridus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
AL3G16140 Arabidopsis lyrata HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
AT1G09100 Arabidopsis thaliana HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
AT3G05530 Arabidopsis thaliana HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
arahy.Tifrunner.gnm1.ann1.4BL4Y4 Arachis hypogaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
arahy.Tifrunner.gnm1.ann1.5HI2FQ Arachis hypogaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
arahy.Tifrunner.gnm1.ann1.ECLV29 Arachis hypogaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
arahy.Tifrunner.gnm1.ann1.FS9JEZ Arachis hypogaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
arahy.Tifrunner.gnm1.ann1.Q1UW6Y Arachis hypogaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
arahy.Tifrunner.gnm1.ann1.ZM6EKQ Arachis hypogaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
MSTRG.27884 Avicennia marina HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
EL10Ac4g09910 Beta vulgaris HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
EL10Ac5g10457 Beta vulgaris HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BcaB04g19259 Brassica carinata HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BcaB04g21440 Brassica carinata HOM05D000070 ORTHO05D014717 1.4e-09 68.2 37 86.5
BcaB04g21441 Brassica carinata HOM05D000070 ORTHO05D014717 1.4e-09 68.2 37 86.5
BcaC05g30113 Brassica carinata HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BcaC05g30159 Brassica carinata HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
A03p34180 Brassica napus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BNapus_Darmor_BZH_scaffold_114p00010 Brassica napus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
C03p41570 Brassica napus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.4e-09 68.2 37 86.5
BolC3t16438H Brassica oleracea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BolC5t34828H Brassica oleracea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BraA03t12592Z Brassica rapa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BraA05t19074Z Brassica rapa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
BraSC132t45499Z Brassica rapa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
CSS0018374 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
CANSAT54G0721 Cannabis sativa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Carub.0003s0482 Capsella rubella HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
CARHR008990 Cardamine hirsuta HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
CARHR079920 Cardamine hirsuta HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Cpa.g.sc327.2 Carica papaya HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Cfa006632 Carpinus fangiana HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
AUR62000758 Chenopodium quinoa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
AUR62005210 Chenopodium quinoa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Ca_10129_v3 Cicer arietinum L. HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
ClCG02G015290 Citrullus lanatus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
ClCG03G017280 Citrullus lanatus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Ciclev10001269m.g Citrus clementina HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Ciclev10001272m.g Citrus clementina HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Cc02_g34180 Coffea canephora HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
COL.COLO4_10524 Corchorus olitorius HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Haze_04136 Corylus avellana HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Haze_04149 Corylus avellana HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
MELO3C004218.2 Cucumis melo HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
MELO3C015296.2 Cucumis melo HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
CsaV3_1G038720 Cucumis sativus L. HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
CsaV3_2G006720 Cucumis sativus L. HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Duzib106G0991 Durio zibethinus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Duzib128G1473 Durio zibethinus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Duzib177G0021 Durio zibethinus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
ECA236G1221 Erigeron canadensis HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
ECA247G2802 Erigeron canadensis HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Migut.B00711 Erythranthe guttata HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Thhalv10020798m.g Eutrema salsugineum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
FvH4_6g06600 Fragaria vesca HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
FAN02G1474 Fragaria x ananassa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
FAN05G5158 Fragaria x ananassa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Glyma.03G235250 Glycine max HOM05D001134 ORTHO05D001035 1.4e-09 68.2 37 86.5
Glyma.10G151900 Glycine max HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Gohir.A11G294500 Gossypium hirsutum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Gohir.A13G109500 Gossypium hirsutum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Gohir.D11G309200 Gossypium hirsutum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Gohir.D13G112200 Gossypium hirsutum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Gorai.007G341200 Gossypium raimondii HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Gorai.013G125900 Gossypium raimondii HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
HanXRQChr03g0068531 Helianthus annuus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
HanXRQChr11g0340011 Helianthus annuus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Hma1.2p1_0472F.1_g159590 Hydrangea macrophylla HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Hma1.2p1_1292F.1_g273810 Hydrangea macrophylla HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Hma1.2p1_2930F.1_g330493 Hydrangea macrophylla HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Lsat_1_v5_gn_7_72081 Lactuca sativa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Lj1g0008543 Lotus japonicus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
MD04G1199700 Malus domestica HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
MD04G1199800 Malus domestica HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
MD12G1212500 Malus domestica HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Manes.08G117200 Manihot esculenta HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Manes.09G170700 Manihot esculenta HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Medtr1g083330 Medicago truncatula HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Medtr4g033235 Medicago truncatula HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Oeu012120.2 Olea europaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Oeu017261.1 Olea europaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Oeu043343.1 Olea europaea HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Phvul.007G197100 Phaseolus vulgaris HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Psat1g224040 Pisum sativum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Potri.005G025100 Populus trichocarpa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Potri.013G016800 Populus trichocarpa HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Prupe.6G320300 Prunus persica HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
PGR031G2362 Punica granatum HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
RcHm_v2.0_Chr3g0455801 Rosa chinensis HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Sabra05G0030700 Salix brachista HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Sabra13G0015500 Salix brachista HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
SalBow1G8586 Salvia bowleyana HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Sp1g07700 Schrenkiella parvula HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Sp3g04370 Schrenkiella parvula HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Sed0007718 Sechium edule HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Sed0024433 Sechium edule HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Hund21712 Selenicereus undatus HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
SGA_v2.0_scaffold8G04462 Striga asiatica HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
Thecc.05G313300 Theobroma cacao HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
TPR.G31064 Trifolium pratense HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
TPR.G6056 Trifolium pratense HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
TWI12G1234 Tripterygium wilfordii HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
TWI56G0225 Tripterygium wilfordii HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
unitig_747.g21279 Utricularia gibba HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
vmacro19744 Vaccinium macrocarpon HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
VMungo0720G0242 Vigna mungo HOM05D000070 ORTHO05D004358 1.4e-09 68.2 37 86.5
C05p61680 Brassica napus HOM05D000070 ORTHO05D004358 3.1e-09 67.0 37 83.8
MSTRG.20338 Avicennia marina HOM05D000070 ORTHO05D004358 5.3e-09 66.2 37 83.8
CDE02G0981 Ceratophyllum demersum HOM05D000070 ORTHO05D004358 5.3e-09 66.2 37 83.8
CDE09G0393 Ceratophyllum demersum HOM05D000070 ORTHO05D004358 5.3e-09 66.2 37 83.8
Nn7g38295 Nelumbo nucifera HOM05D000070 ORTHO05D004358 5.3e-09 66.2 37 83.8
Os02g0803700 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D004358 5.3e-09 66.2 37 83.8
Os06g0173100 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D004358 5.3e-09 66.2 37 83.8
Zm00001eb258170 Zea mays HOM05D000070 ORTHO05D004358 5.3e-09 66.2 37 83.8
CAN.G1459.15 Capsicum annuum HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Eucgr.L00637 Eucalyptus grandis HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Nn4g26679 Nelumbo nucifera HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Nitab4.5_0000176g0010 Nicotiana tabacum HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Nitab4.5_0003658g0060 Nicotiana tabacum HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Nitab4.5_0003844g0050 Nicotiana tabacum HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Peaxi162Scf00037g01219 Petunia axillaris HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Peaxi162Scf00071g00535 Petunia axillaris HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
SEGI_30197 Sequoiadendron giganteum HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Solyc01g099760.3 Solanum lycopersicum HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Sopen01g043280 Solanum pennellii HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
PGSC0003DMG400024715 Solanum tuberosum HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 83.8
Zm00001eb281730 Zea mays HOM05D000070 ORTHO05D004358 7.0e-09 65.9 37 81.1
AagrBONN_evm.TU.Sc2ySwM_117.4022 Anthoceros agrestis HOM05D000070 ORTHO05D004358 9.1e-09 65.5 37 81.1
Mapoly0085s0078 Marchantia polymorpha HOM05D000070 ORTHO05D004358 9.1e-09 65.5 37 81.1
HPP92_015832 Vanilla planifolia HOM05D000070 ORTHO05D004358 1.2e-08 65.1 37 83.8
GSVIVG01017724001 Vitis vinifera HOM05D000070 ORTHO05D004358 1.2e-08 65.1 37 83.8
ATR0605G351 Amborella trichopoda HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
Aqoxy5G00746 Aquilegia oxysepala HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
MBI18_g37560_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
PSO210G3177 Papaver somniferum HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
PSO675G4182 Papaver somniferum HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
PSO675G8689 Papaver somniferum HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
PSO832G3424 Papaver somniferum HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
SMO367G0013 Selaginella moellendorffii HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 81.1
Solyc08g021990.3 Solanum lycopersicum HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 81.1
TAR362G0872 Trochodendron aralioides HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
TAR625G1004 Trochodendron aralioides HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
TAR626G0874 Trochodendron aralioides HOM05D000070 ORTHO05D004358 1.6e-08 64.7 37 83.8
TPR.G6079 Trifolium pratense HOM05D000070 ORTHO05D004358 2.0e-08 64.3 37 81.1
Thhalv10009281m.g Eutrema salsugineum HOM05D000070 ORTHO05D014717 3.5e-08 63.5 35 82.9
Pp3c5_21920 Physcomitrium patens HOM05D000070 ORTHO05D004358 3.5e-08 63.5 37 78.4
Pp3c25_4190 Physcomitrium patens HOM05D000070 ORTHO05D004358 4.5e-08 63.2 37 75.7
CBR_g29366 Chara braunii HOM05D000070 ORTHO05D004358 1.0e-07 62.0 37 78.4
PRCOL_00003532 Prasinoderma coloniale HOM05D000070 ORTHO05D004358 1.0e-07 62.0 39 71.8
ATR0568G176 Amborella trichopoda HOM05D000070 ORTHO05D014717 1.7e-07 61.2 37 78.4
MCO14G562 Micromonas commoda HOM05D000070 ORTHO05D004358 2.2e-07 60.8 36 77.8
BolC1t03158H Brassica oleracea HOM05D009194 ORTHO05D033819 3.8e-07 60.1 47 61.7
C09p75670 Brassica napus HOM05D009194 ORTHO05D024240 1.1e-06 58.5 52 53.8
ATR0568G052 Amborella trichopoda HOM05D000070 ORTHO05D014717 1.9e-06 57.8 37 73.0
Cre10.g439150 Chlamydomonas reinhardtii HOM05D000070 ORTHO05D004358 1.9e-06 57.8 37 73.0
BolC2t11406H Brassica oleracea HOM05D008290 ORTHO05D011151 3.2e-06 57.0 51 52.9
BraA01t02625Z Brassica rapa HOM05D009194 ORTHO05D033819 3.2e-06 57.0 49 55.1
BcaC07g38500 Brassica carinata HOM05D009194 ORTHO05D020001 5.5e-06 56.2 49 55.1


User provided reference genes

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