Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 2.2e-166 589.0 316 100.0
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 4.6e-95 352.1 196 94.9
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 4.6e-95 352.1 196 94.9
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 7.8e-95 351.3 196 94.4
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.3e-94 350.5 196 93.9
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 3.9e-94 349.0 194 95.4
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 8.6e-94 347.8 196 93.4
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.1e-93 347.4 196 93.9
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 1.5e-93 347.1 196 93.4
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 2.5e-93 346.3 197 92.4
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 5.6e-93 345.1 197 91.9
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 5.6e-93 345.1 252 77.4
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 7.3e-93 344.7 196 93.4
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 7.3e-93 344.7 196 93.4
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.2e-92 344.0 196 92.3
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 4.7e-92 342.0 197 90.9
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.4e-91 340.5 196 91.3
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 1.8e-91 340.1 196 94.4
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 1.8e-91 340.1 196 91.8
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 2.9e-89 332.8 196 88.8
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 4.3e-85 318.9 195 85.6
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.1e-77 294.3 196 78.1
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.9e-77 293.5 196 78.1
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.3e-77 292.7 195 76.4
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 2.1e-76 290.0 196 77.6
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 2.8e-76 289.7 203 76.4
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 6.2e-76 288.5 195 75.9
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.4e-75 287.3 197 76.1
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 1.4e-75 287.3 199 75.9
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 2.4e-75 286.6 196 76.0
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 6.9e-75 285.0 187 78.1
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 1.5e-74 283.9 196 74.0
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.5e-74 283.9 192 77.6
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 2.6e-74 283.1 196 76.0
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 7.6e-74 281.6 202 73.3
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.3e-73 280.8 203 71.9
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 2.2e-73 280.0 196 75.0
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 3.8e-73 279.3 196 75.5
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 8.4e-73 278.1 203 73.4
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 1.9e-72 276.9 201 74.1
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.9e-72 276.9 197 74.1
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 1.9e-72 276.9 200 73.0
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.4e-72 276.6 197 73.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 2.4e-72 276.6 198 74.2
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 2.4e-72 276.6 198 73.2
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 2.4e-72 276.6 208 68.8
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 7.1e-72 275.0 198 74.2
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 9.3e-72 274.6 196 72.4
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 9.3e-72 274.6 204 73.5
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.6e-71 273.9 181 78.5
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.6e-71 273.9 196 73.0
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.1e-71 273.5 202 72.8
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 2.7e-71 273.1 199 69.3
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.5e-71 272.7 196 72.4
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.8e-70 270.4 202 72.3
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 2.3e-70 270.0 206 71.4
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 2.3e-70 270.0 202 71.8
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 3.0e-70 269.6 199 70.9
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.0e-70 269.6 208 71.2
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 3.0e-70 269.6 198 71.7
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 3.0e-70 269.6 203 71.9
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 3.0e-70 269.6 198 73.2
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 8.7e-70 268.1 198 72.2
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 1.1e-69 267.7 172 80.2
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 1.9e-69 266.9 202 70.8
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 1.9e-69 266.9 172 79.7
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.9e-69 266.9 199 69.3
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 4.3e-69 265.8 202 69.3
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 9.6e-69 264.6 169 80.5
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 1.3e-68 264.2 212 69.8
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 1.3e-68 264.2 205 71.2
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 2.8e-68 263.1 198 71.7
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 3.7e-68 262.7 198 71.2
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.8e-68 262.3 198 71.2
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 6.2e-68 261.9 204 69.1
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 1.1e-67 261.2 195 71.8
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.1e-67 261.2 198 68.7
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 1.4e-67 260.8 195 71.8
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 2.4e-67 260.0 200 69.0
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.5e-66 257.3 201 67.7
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 3.4e-66 256.1 206 66.5
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 3.4e-66 256.1 202 68.8
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 5.8e-66 255.4 203 67.0
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 7.6e-66 255.0 167 79.0
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 6.5e-65 251.9 202 65.3
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 6.5e-65 251.9 196 68.4
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 9.3e-64 248.1 169 75.1
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.1e-63 246.9 169 74.6
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 2.1e-63 246.9 169 74.6
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.5e-63 246.1 195 68.7
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 4.6e-63 245.7 201 64.2
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 7.9e-63 245.0 203 65.0
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.0e-62 244.6 208 64.4
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 2.5e-61 240.0 169 73.4
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 9.6e-61 238.0 231 59.3
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 6.2e-60 235.3 196 65.3
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 6.2e-60 235.3 196 65.3
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 8.2e-60 235.0 224 58.0
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 2.4e-59 233.4 208 59.6
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 5.3e-59 232.3 169 68.6
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.5e-58 230.7 198 64.1
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 1.7e-57 227.3 206 64.6
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 2.9e-57 226.5 169 69.8
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 6.5e-57 225.3 141 80.1
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 3.5e-55 219.5 183 65.6
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.8e-51 207.2 141 74.5
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 3.1e-51 206.5 178 64.0
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 5.3e-51 205.7 169 60.4
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 5.3e-51 205.7 141 75.2
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 2.0e-50 203.8 169 58.6
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 5.0e-49 199.1 134 76.1
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 2.1e-47 193.7 137 75.9
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 4.6e-47 192.6 143 73.4
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 7.7e-42 175.3 110 80.9
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 7.2e-40 168.7 141 61.0
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.0e-38 164.9 170 48.8
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 7.4e-37 158.7 101 80.2
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 5.0e-33 146.0 208 44.2
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.3e-28 129.0 77 84.4
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 2.0e-26 124.0 90 71.1
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 5.5e-24 115.9 95 67.4
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.1e-23 114.0 78 73.1
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 2.7e-23 113.6 99 61.6
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 1.2e-21 108.2 91 67.0
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 9.8e-13 78.6 110 49.1
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.2e-10 71.6 53 62.3
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.2e-10 71.6 77 57.1
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.8e-09 66.6 36 88.9
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 7.2e-08 62.4 36 86.1
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 1.2e-07 61.6 43 67.4
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 2.1e-07 60.8 36 75.0
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 2.1e-07 60.8 36 75.0
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.1e-07 60.8 36 83.3
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 2.8e-07 60.5 107 41.1
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.4e-06 58.2 36 75.0
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.3e-06 57.4 36 77.8
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 2.3e-06 57.4 37 75.7


User provided reference genes

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