Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 8.7e-69 263.5 128 100.0
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 7.4e-20 100.9 75 68.0
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 7.4e-20 100.9 75 68.0
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 7.4e-20 100.9 75 68.0
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 9.7e-20 100.5 75 66.7
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 2.2e-19 99.4 75 66.7
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 2.2e-19 99.4 75 66.7
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 2.4e-18 95.9 75 64.0
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 3.1e-18 95.5 75 62.7
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 9.1e-18 94.0 75 61.3
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 1.6e-17 93.2 100 50.0
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 2.0e-17 92.8 75 60.0
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 6.5e-16 87.8 77 57.1
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 3.0e-13 79.0 78 50.0
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 1.2e-12 77.0 78 47.4
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 1.5e-12 76.6 78 47.4
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 2.6e-12 75.9 78 46.2
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 2.6e-12 75.9 78 46.2
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 2.6e-12 75.9 76 48.7
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 3.4e-12 75.5 78 46.2
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 3.4e-12 75.5 78 46.2
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.4e-12 75.1 77 46.8
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.7e-12 74.7 78 47.4
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.7e-12 74.7 78 47.4
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 7.5e-12 74.3 78 46.2
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 7.5e-12 74.3 78 46.2
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 9.8e-12 73.9 79 46.8
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 1.3e-11 73.6 78 44.9
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 1.3e-11 73.6 76 44.7
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 1.3e-11 73.6 78 50.0
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 1.7e-11 73.2 78 44.9
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 1.7e-11 73.2 77 49.4
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.7e-11 73.2 78 48.7
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.2e-11 72.8 76 47.4
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 2.8e-11 72.4 78 48.7
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.8e-11 72.4 78 47.4
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.8e-11 72.4 78 47.4
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 4.8e-11 71.6 78 46.2
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 6.3e-11 71.2 78 46.2
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 6.3e-11 71.2 78 47.4
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 8.3e-11 70.9 78 46.2
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 8.3e-11 70.9 78 47.4
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 8.3e-11 70.9 82 47.6
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 1.1e-10 70.5 76 46.1
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 1.1e-10 70.5 78 46.2
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.1e-10 70.5 78 46.2
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 1.1e-10 70.5 77 48.1
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 1.4e-10 70.1 78 46.2
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.4e-10 70.1 78 46.2
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 1.4e-10 70.1 78 48.7
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.8e-10 69.7 78 44.9
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.8e-10 69.7 78 44.9
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 2.4e-10 69.3 76 44.7
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.4e-10 69.3 76 43.4
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 2.4e-10 69.3 76 43.4
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 2.4e-10 69.3 78 43.6
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 2.4e-10 69.3 76 44.7
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 3.1e-10 68.9 76 46.1
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 3.1e-10 68.9 76 44.7
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 3.1e-10 68.9 76 43.4
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 4.1e-10 68.6 78 44.9
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 5.4e-10 68.2 78 46.2
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 5.4e-10 68.2 78 46.2
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 5.4e-10 68.2 78 43.6
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 7.0e-10 67.8 76 42.1
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 7.0e-10 67.8 78 43.6
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.2e-09 67.0 78 43.6
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 1.2e-09 67.0 78 46.2
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.2e-09 67.0 75 45.3
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.2e-09 67.0 76 44.7
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 1.6e-09 66.6 78 46.2
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.6e-09 66.6 78 43.6
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.6e-09 66.6 130 34.6
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 1.6e-09 66.6 78 46.2
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 2.0e-09 66.2 48 79.2
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 2.0e-09 66.2 48 79.2
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 2.0e-09 66.2 48 79.2
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 2.0e-09 66.2 126 34.9
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 2.0e-09 66.2 78 44.9
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 2.7e-09 65.9 76 40.8
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.7e-09 65.9 75 44.0
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 3.5e-09 65.5 78 44.9
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 3.5e-09 65.5 78 42.3
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 3.5e-09 65.5 78 42.3
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 4.5e-09 65.1 48 77.1
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 4.5e-09 65.1 78 42.3
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 4.5e-09 65.1 78 42.3
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 4.5e-09 65.1 47 76.6
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 4.5e-09 65.1 78 46.2
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 4.5e-09 65.1 78 42.3
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 5.9e-09 64.7 48 77.1
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 5.9e-09 64.7 78 42.3
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 5.9e-09 64.7 78 41.0
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 5.9e-09 64.7 48 77.1
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 7.7e-09 64.3 78 42.3
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 7.7e-09 64.3 75 44.0
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.3e-08 63.5 76 46.1
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.3e-08 63.5 78 43.6
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 1.7e-08 63.2 98 39.8
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.7e-08 63.2 97 37.1
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.7e-08 63.2 106 36.8
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.7e-08 63.2 82 46.3
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 2.9e-08 62.4 78 42.3
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 2.9e-08 62.4 75 45.3
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 3.8e-08 62.0 78 43.6
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.8e-08 62.0 75 44.0
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 5.0e-08 61.6 78 41.0
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 6.5e-08 61.2 101 32.7
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 8.5e-08 60.8 101 33.7
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 8.5e-08 60.8 78 41.0
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 1.1e-07 60.5 77 44.2
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 2.5e-07 59.3 78 42.3
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 2.5e-07 59.3 77 41.6
C08p01560 Brassica napus HOM05D056010 ORTHO05D039557 3.2e-07 58.9 29 89.7
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 3.2e-07 58.9 78 41.0
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.2e-07 58.5 78 39.7
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.2e-07 58.5 78 39.7
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 9.4e-07 57.4 77 39.0
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 1.6e-06 56.6 48 75.0
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 2.7e-06 55.8 29 86.2
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 2.7e-06 55.8 50 66.0
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.7e-06 55.8 48 54.2
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 3.6e-06 55.5 77 40.3
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 3.6e-06 55.5 109 31.2
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 3.6e-06 55.5 77 41.6
BcaB01g02287 Brassica carinata HOM05D000249 ORTHO05D000206 4.7e-06 55.1 42 69.0
BcaB07g32361 Brassica carinata HOM05D002674 ORTHO05D007700 4.7e-06 55.1 70 48.6
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 6.1e-06 54.7 90 47.8


User provided reference genes

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