Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.8e-90 335.9 171 100.0
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 8.3e-75 283.9 175 85.1
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 8.3e-75 283.9 175 85.1
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 8.3e-75 283.9 178 83.7
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 4.1e-74 281.6 175 84.0
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 5.4e-74 281.2 178 83.1
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 7.0e-74 280.8 175 84.0
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 7.0e-74 280.8 175 84.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.0e-73 279.3 172 84.9
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 8.6e-72 273.9 176 84.7
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 4.7e-70 268.1 176 83.5
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.2e-67 259.2 179 77.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 6.4e-67 257.7 178 77.5
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.9e-66 256.1 151 88.7
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 5.4e-66 254.6 175 77.7
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 7.0e-66 254.2 176 77.3
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.6e-65 251.5 179 76.0
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.9e-64 248.4 172 74.4
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.9e-63 246.1 172 73.8
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.3e-63 245.0 172 72.1
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 2.1e-62 242.7 172 71.5
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 2.1e-62 242.7 172 70.9
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 2.8e-62 242.3 173 71.7
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.6e-62 241.9 177 70.6
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 8.0e-62 240.7 175 72.0
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.1e-61 240.4 179 72.6
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.1e-61 240.4 179 72.6
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 2.3e-61 239.2 168 73.2
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 5.2e-61 238.0 177 71.2
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 5.2e-61 238.0 169 69.8
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 5.2e-61 238.0 174 71.3
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 8.9e-61 237.3 173 69.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 3.4e-60 235.3 180 71.1
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.4e-60 235.3 173 70.5
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 4.4e-60 235.0 169 70.4
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 4.4e-60 235.0 180 69.4
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 4.4e-60 235.0 180 69.4
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 5.8e-60 234.6 180 68.3
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.8e-60 234.6 171 68.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 7.5e-60 234.2 169 71.0
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.5e-60 234.2 173 69.4
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 9.8e-60 233.8 176 69.9
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.3e-59 233.4 169 70.4
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-59 233.0 174 70.7
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.7e-59 233.0 175 69.1
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.7e-59 233.0 173 71.1
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.2e-59 232.6 173 68.8
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 2.9e-59 232.3 176 68.8
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 2.9e-59 232.3 173 68.8
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.9e-59 232.3 173 68.8
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.9e-59 232.3 180 68.9
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 3.7e-59 231.9 170 71.2
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 3.7e-59 231.9 173 68.8
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.9e-59 231.5 171 67.3
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 4.9e-59 231.5 180 68.3
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.4e-59 231.1 169 69.8
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 6.4e-59 231.1 173 68.8
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-58 230.3 167 72.5
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.1e-58 230.3 169 69.8
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.1e-58 230.3 173 68.2
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.4e-58 229.9 172 70.3
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.9e-58 229.6 172 69.2
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.4e-58 229.2 173 69.9
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 4.1e-58 228.4 180 67.8
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.4e-58 228.0 172 69.2
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 5.4e-58 228.0 169 67.5
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 7.1e-58 227.6 160 71.9
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.2e-57 226.9 171 70.2
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.2e-57 226.9 170 68.8
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.6e-57 226.5 168 69.6
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.6e-57 226.5 172 69.2
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-57 226.1 172 69.8
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.1e-57 226.1 171 67.8
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 2.1e-57 226.1 170 66.5
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 2.7e-57 225.7 188 65.4
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 4.6e-57 224.9 172 69.2
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 4.6e-57 224.9 171 69.6
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 4.6e-57 224.9 179 65.4
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 4.6e-57 224.9 170 67.1
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 7.8e-57 224.2 166 67.5
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.0e-56 223.8 167 68.9
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.3e-56 223.4 178 67.4
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.3e-56 223.4 178 67.4
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.7e-56 223.0 168 68.5
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.7e-56 223.0 169 68.6
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.3e-56 222.6 170 70.0
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 3.0e-56 222.2 174 65.5
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 3.9e-56 221.9 144 75.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 8.6e-56 220.7 166 69.3
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.5e-55 219.9 171 66.7
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.5e-55 219.9 170 68.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.9e-55 219.5 178 69.1
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 2.5e-55 219.2 170 68.8
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 2.5e-55 219.2 174 67.2
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 4.3e-55 218.4 173 68.8
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 5.6e-55 218.0 177 66.1
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 5.6e-55 218.0 173 65.9
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 7.3e-55 217.6 177 66.1
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 9.5e-55 217.2 168 67.9
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 9.5e-55 217.2 180 62.2
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 9.5e-55 217.2 171 66.1
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.2e-54 216.9 173 67.6
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.1e-54 216.1 177 65.5
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.8e-54 215.7 166 65.7
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.8e-54 215.7 166 65.7
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.7e-54 214.9 172 67.4
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 4.7e-54 214.9 172 67.4
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 6.2e-54 214.5 179 64.2
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 6.2e-54 214.5 168 68.5
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 6.2e-54 214.5 160 69.4
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 3.1e-53 212.2 132 79.5
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 5.2e-53 211.5 168 66.7
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 4.4e-52 208.4 126 78.6
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 5.8e-52 208.0 176 63.6
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.3e-51 206.8 165 67.3
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.9e-51 205.7 168 65.5
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.9e-51 204.9 170 64.1
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 4.9e-51 204.9 172 62.8
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.4e-51 204.5 171 63.7
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 6.4e-51 204.5 170 64.1
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.4e-50 203.4 169 64.5
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 7.1e-50 201.1 144 70.1
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 6.0e-49 198.0 173 61.3
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 2.3e-48 196.1 175 61.1
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 2.3e-48 196.1 175 60.6
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 5.1e-48 194.9 158 66.5
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.9e-47 193.0 168 58.9
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 9.6e-47 190.7 132 75.0
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.2e-44 183.7 185 56.2
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 2.0e-44 183.0 243 46.9
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 5.8e-44 181.4 117 74.4
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 4.9e-43 178.3 143 60.1
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 6.4e-43 177.9 130 66.2
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.2e-42 175.6 146 58.9
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 1.7e-40 169.9 145 60.0
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.7e-40 169.9 177 56.5
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 7.3e-39 164.5 146 60.3
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 9.6e-39 164.1 178 51.1
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 8.1e-38 161.0 147 59.9
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 4.4e-36 155.2 144 63.9
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.2e-34 149.1 126 66.7
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.0e-33 144.8 93 74.2
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 9.6e-31 137.5 176 48.9
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.6e-30 136.7 85 80.0
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-30 136.3 82 79.3
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.8e-30 136.0 82 78.0
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 6.9e-29 131.3 104 72.1
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 6.9e-29 131.3 104 72.1
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.7e-27 126.7 172 44.2
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.1e-26 124.0 127 55.1
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.1e-25 119.8 108 60.2
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 4.3e-23 112.1 110 55.5
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.6e-22 110.2 124 50.8
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 4.5e-20 102.1 118 44.1
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 1.9e-18 96.7 103 42.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.3e-15 85.5 139 36.7
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.8e-14 82.8 77 62.3
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 6.2e-14 81.6 81 54.3
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 8.2e-14 81.3 84 52.4
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.8e-13 80.1 42 88.1
A06p00520 Brassica napus HOM05D004222 ORTHO05D004982 2.4e-13 79.7 60 71.7
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 2.0e-12 76.6 88 52.3
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.0e-11 72.0 106 35.8
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 3.9e-08 62.4 59 55.9
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 5.7e-07 58.5 84 41.7
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.6e-06 57.0 138 31.9


User provided reference genes

Program Settings