Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10341 Brassica carinata HOM05D005775 ORTHO05D000023 1.7e-204 716.1 445 100.0
Sp4g13280 Schrenkiella parvula HOM05D005775 ORTHO05D000023 6.3e-167 591.3 455 78.0
BolC4t27488H Brassica oleracea HOM05D005775 ORTHO05D000023 2.1e-162 576.2 459 77.1
BraA04t17874Z Brassica rapa HOM05D005775 ORTHO05D000023 2.7e-162 575.9 459 77.1
C04p59780 Brassica napus HOM05D005775 ORTHO05D000023 8.8e-161 570.9 459 76.9
A04p23470 Brassica napus HOM05D005775 ORTHO05D000023 7.5e-160 567.8 459 76.5
Thhalv10016605m.g Eutrema salsugineum HOM05D005775 ORTHO05D000023 9.1e-158 560.8 459 73.6
C04p19810 Brassica napus HOM05D005775 ORTHO05D000023 2.3e-145 519.6 457 63.2
AT2G30780 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 7.5e-144 514.6 453 71.1
Carub.0004s1199 Capsella rubella HOM05D005775 ORTHO05D000023 5.0e-140 501.9 453 69.1
AL4G25710 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 4.3e-139 498.8 446 70.9
CARHR124250 Cardamine hirsuta HOM05D005775 ORTHO05D000023 1.2e-138 497.3 454 69.8
AL4G25690 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 1.7e-132 476.9 429 71.1
Aa31LG5G6080 Aethionema arabicum HOM05D005775 ORTHO05D000023 2.1e-130 469.9 455 65.7
THA.LOC104800814 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 5.3e-113 412.1 453 59.2
ClCG00G003600 Citrullus lanatus HOM05D005775 ORTHO05D000023 5.5e-78 295.8 427 39.1
Lj2C1182T1 Lonicera japonica HOM05D005775 ORTHO05D000023 8.8e-76 288.5 426 50.2
Peaxi162Scf00517g00426 Petunia axillaris HOM05D005775 ORTHO05D000023 2.4e-73 280.4 452 46.7
Prupe.8G249700 Prunus persica HOM05D005775 ORTHO05D000023 2.4e-73 280.4 452 46.9
CSS0012831 Camellia sinensis var. sinensis HOM05D005775 ORTHO05D000023 1.5e-72 277.7 450 46.9
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 1.5e-72 277.7 452 47.1
Haze_04786 Corylus avellana HOM05D005775 ORTHO05D000023 5.9e-72 275.8 454 46.5
Manes.01G212200 Manihot esculenta HOM05D005775 ORTHO05D000023 1.6e-69 267.7 443 45.8
Thecc.01G287300 Theobroma cacao HOM05D005775 ORTHO05D000023 3.6e-69 266.5 454 46.5
Aqoxy2G03167 Aquilegia oxysepala HOM05D005775 ORTHO05D000023 6.7e-68 262.3 425 44.9
Actinidia24301 Actinidia chinensis HOM05D005775 ORTHO05D000023 1.5e-67 261.2 428 47.2
Ciclev10019759m.g Citrus clementina HOM05D005775 ORTHO05D000023 2.2e-66 257.3 435 47.4
GSVIVG01011040001 Vitis vinifera HOM05D005775 ORTHO05D000023 6.3e-66 255.8 445 45.6
Gorai.004G084600 Gossypium raimondii HOM05D005775 ORTHO05D000023 1.1e-65 255.0 455 44.8
vmacro02530 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 1.1e-65 255.0 442 44.3
Lalb_Chr17g0335721 Lupinus albus HOM05D005775 ORTHO05D000023 1.4e-65 254.6 427 45.2
Gohir.D08G079600 Gossypium hirsutum HOM05D005775 ORTHO05D000023 4.1e-65 253.1 438 45.9
RcHm_v2.0_Chr6g0292231 Rosa chinensis HOM05D005775 ORTHO05D000023 5.3e-65 252.7 428 46.0
Cpa.g.sc731.2 Carica papaya HOM05D005775 ORTHO05D000023 3.5e-64 250.0 452 43.6
Gohir.A08G071400 Gossypium hirsutum HOM05D005775 ORTHO05D000023 2.9e-63 246.9 438 45.2
DCAR_005831 Daucus carota HOM05D005775 ORTHO05D000023 3.8e-63 246.5 451 44.1
Lsat_1_v5_gn_6_117561 Lactuca sativa HOM05D005775 ORTHO05D000023 3.8e-63 246.5 461 48.6
Hund05366 Selenicereus undatus HOM05D005775 ORTHO05D000023 3.8e-63 246.5 422 46.2
HanXRQChr09g0252061 Helianthus annuus HOM05D005775 ORTHO05D000023 8.5e-63 245.4 458 44.5
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 1.5e-62 244.6 428 46.0
Carub.0004s3072 Capsella rubella HOM05D005775 ORTHO05D000023 1.9e-62 244.2 435 39.3
Sc17g0003740 Simmondsia chinensis HOM05D005775 ORTHO05D000023 5.5e-62 242.7 453 43.3
Dinv11278 Davidia involucrata HOM05D005775 ORTHO05D000023 9.4e-62 241.9 451 44.8
Glyma.03G148400 Glycine max HOM05D005775 ORTHO05D000023 3.6e-61 240.0 431 42.7
Solyc07g053060.3 Solanum lycopersicum HOM05D005775 ORTHO05D000023 3.6e-61 240.0 437 44.4
Lj1g0019119 Lotus japonicus HOM05D005775 ORTHO05D000023 8.0e-61 238.8 428 43.5
Oeu047904.1 Olea europaea HOM05D005775 ORTHO05D000023 1.0e-60 238.4 443 43.1
THA.LOC104817539 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 2.3e-60 237.3 427 43.3
Dinv32979 Davidia involucrata HOM05D005775 ORTHO05D000023 3.0e-60 236.9 452 44.5
DCAR_002776 Daucus carota HOM05D005775 ORTHO05D000023 8.8e-60 235.3 441 43.1
CAN.G438.46 Capsicum annuum HOM05D005775 ORTHO05D000023 1.5e-59 234.6 443 42.9
ECA234G1745 Erigeron canadensis HOM05D005775 ORTHO05D000023 2.6e-59 233.8 436 45.0
HanXRQChr12g0362741 Helianthus annuus HOM05D005775 ORTHO05D000023 4.4e-59 233.0 428 44.4
Sopen07g026610 Solanum pennellii HOM05D005775 ORTHO05D000023 7.4e-59 232.3 437 43.7
HPP92_003166 Vanilla planifolia HOM05D005775 ORTHO05D000023 3.7e-58 229.9 417 49.4
CiPaw.09G181700 Carya illinoinensis HOM05D005775 ORTHO05D000023 4.8e-58 229.6 450 42.2
Cc01_g19990 Coffea canephora HOM05D005775 ORTHO05D000023 8.2e-58 228.8 426 44.1
Eucgr.H01610 Eucalyptus grandis HOM05D005775 ORTHO05D000023 1.4e-57 228.0 443 43.1
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 1.8e-57 227.6 367 35.1
PGSC0003DMG400026158 Solanum tuberosum HOM05D005775 ORTHO05D000023 1.8e-57 227.6 437 43.2
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 2.4e-57 227.3 432 44.4
TAR365G0919 Trochodendron aralioides HOM05D005775 ORTHO05D000023 2.4e-57 227.3 449 42.8
ClCG00G000240 Citrullus lanatus HOM05D005775 ORTHO05D000023 3.1e-57 226.9 427 44.0
ClCG10G003500 Citrullus lanatus HOM05D005775 ORTHO05D000023 3.1e-57 226.9 427 44.0
Glyma.19G151700 Glycine max HOM05D005775 ORTHO05D000023 4.1e-57 226.5 431 42.7
MELO3C014018.2 Cucumis melo HOM05D005775 ORTHO05D000023 5.3e-57 226.1 439 43.7
Sabra16G0115500 Salix brachista HOM05D005775 ORTHO05D000023 5.3e-57 226.1 458 41.9
CANSAT25G1854 Cannabis sativa HOM05D005775 ORTHO05D000023 1.6e-56 224.6 431 42.7
MSTRG.12583 Avicennia marina HOM05D005775 ORTHO05D000023 2.0e-56 224.2 435 42.1
Migut.N02129 Erythranthe guttata HOM05D005775 ORTHO05D000023 2.0e-56 224.2 443 42.9
QL12p023176 Quercus lobata HOM05D005775 ORTHO05D000023 1.0e-55 221.9 432 43.1
MBI18_g06533_MAGBIO Magnolia biondii HOM05D005775 ORTHO05D000023 1.7e-55 221.1 431 43.4
AUR62037928 Chenopodium quinoa HOM05D005775 ORTHO05D000023 2.2e-55 220.7 375 46.4
Potri.016G119600 Populus trichocarpa HOM05D005775 ORTHO05D000023 2.2e-55 220.7 376 46.8
COL.COLO4_08057 Corchorus olitorius HOM05D005775 ORTHO05D000023 3.8e-55 219.9 434 42.4
Medtr2g049540 Medicago truncatula HOM05D005775 ORTHO05D000023 3.8e-55 219.9 428 43.0
Medtr5g076010 Medicago truncatula HOM05D005775 ORTHO05D000023 5.0e-55 219.5 428 43.2
TAR636G1825 Trochodendron aralioides HOM05D005775 ORTHO05D000023 5.0e-55 219.5 425 47.1
Rhsim13G0020300 Rhododendron simsii HOM05D005775 ORTHO05D000023 1.5e-54 218.0 453 41.9
Ah.08g220410 Amaranthus hybridus HOM05D005775 ORTHO05D000023 1.9e-54 217.6 425 43.1
FAN27G3110 Fragaria x ananassa HOM05D005775 ORTHO05D000023 3.2e-54 216.9 426 42.7
EL10Ac7g17159 Beta vulgaris HOM05D005775 ORTHO05D000023 4.2e-54 216.5 372 46.0
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 7.2e-54 215.7 451 42.6
FAN24G2890 Fragaria x ananassa HOM05D005775 ORTHO05D000023 9.4e-54 215.3 445 42.5
TWI14G1024 Tripterygium wilfordii HOM05D005775 ORTHO05D000023 9.4e-54 215.3 452 42.9
MD03G1273200 Malus domestica HOM05D005775 ORTHO05D000023 1.6e-53 214.5 426 42.3
FAN15G0955 Fragaria x ananassa HOM05D005775 ORTHO05D000023 3.6e-53 213.4 428 42.5
Aa31LG1G29420 Aethionema arabicum HOM05D005775 ORTHO05D000023 4.7e-53 213.0 434 41.2
AUR62043492 Chenopodium quinoa HOM05D005775 ORTHO05D006285 6.1e-53 212.6 357 47.3
arahy.Tifrunner.gnm1.ann1.9RSW73 Arachis hypogaea HOM05D005775 ORTHO05D000023 1.0e-52 211.8 428 40.2
arahy.Tifrunner.gnm1.ann1.84DKWJ Arachis hypogaea HOM05D005775 ORTHO05D000023 8.8e-52 208.8 428 40.7
VMungo1383G3055 Vigna mungo HOM05D005775 ORTHO05D000023 9.8e-51 205.3 442 41.0
CsaV3_3G003500 Cucumis sativus L. HOM05D005775 ORTHO05D000023 1.3e-50 204.9 405 43.7
SalBow2G0958 Salvia bowleyana HOM05D005775 ORTHO05D000023 4.8e-50 203.0 425 41.9
Phvul.001G146400 Phaseolus vulgaris HOM05D005775 ORTHO05D000023 1.4e-49 201.4 423 40.9
Sed0017897 Sechium edule HOM05D005775 ORTHO05D000023 2.4e-49 200.7 436 40.6
AT2G48000 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 1.2e-48 198.4 424 41.7
CARHR143390 Cardamine hirsuta HOM05D005775 ORTHO05D000023 1.3e-47 194.9 418 40.7
Migut.O00883 Erythranthe guttata HOM05D005775 ORTHO05D000023 1.3e-47 194.9 386 44.0
ClCG00G000230 Citrullus lanatus HOM05D005775 ORTHO05D000023 8.5e-47 192.2 218 45.9
Psat1g018400 Pisum sativum HOM05D005775 ORTHO05D000023 4.2e-46 189.9 442 39.4
Sed0008104 Sechium edule HOM05D005775 ORTHO05D000023 4.2e-46 189.9 441 40.6
BolC4t23514H Brassica oleracea HOM05D005775 ORTHO05D000023 5.5e-46 189.5 211 52.6
Atru.chr5.1309 Acer truncatum HOM05D005775 ORTHO05D000023 1.2e-45 188.3 409 43.0
SGA_v2.0_scaffold172G39044 Striga asiatica HOM05D005775 ORTHO05D000023 2.1e-45 187.6 422 40.3
Os05g0407900 Oryza sativa ssp. japonica HOM05D005775 ORTHO05D000023 6.1e-45 186.0 382 42.7
PSO541G6072 Papaver somniferum HOM05D005775 ORTHO05D000023 1.5e-43 181.4 421 40.4
unitig_21.g20288 Utricularia gibba HOM05D005775 ORTHO05D000023 1.5e-43 181.4 437 39.1
TPR.G16641 Trifolium pratense HOM05D005775 ORTHO05D000023 2.6e-43 180.6 440 37.7
TPR.G17547 Trifolium pratense HOM05D005775 ORTHO05D000023 8.3e-42 175.6 434 38.7
Zm00001eb287820 Zea mays HOM05D005775 ORTHO05D000023 8.3e-42 175.6 435 40.2
Ca_02584_v3 Cicer arietinum L. HOM05D005775 ORTHO05D000023 6.6e-39 166.0 441 37.6
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 1.5e-38 164.9 348 45.1
SEGI_28259 Sequoiadendron giganteum HOM05D005775 ORTHO05D000023 1.4e-36 158.3 423 38.1
Atru.BG.65.p Acer truncatum HOM05D005775 ORTHO05D000023 2.3e-36 157.5 349 43.3
FvH4_2g24360 Fragaria vesca HOM05D005775 ORTHO05D000023 2.3e-36 157.5 432 46.5
PSO302G0009 Papaver somniferum HOM05D005775 ORTHO05D000023 6.8e-36 156.0 370 40.5
MD11G1295800 Malus domestica HOM05D005775 ORTHO05D000023 7.3e-30 136.0 171 42.7
Nn5g27607 Nelumbo nucifera HOM05D005775 ORTHO05D000023 2.2e-26 124.4 114 51.8
PSO675G7470 Papaver somniferum HOM05D005775 ORTHO05D000023 2.2e-26 124.4 316 42.4
MD11G1295900 Malus domestica HOM05D005775 ORTHO05D000023 4.9e-26 123.2 119 49.6
AL4G47600 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 7.3e-22 109.4 116 45.7
Actinidia00716 Actinidia chinensis HOM05D005775 ORTHO05D000023 5.2e-20 103.2 139 41.0
CDE10G1068 Ceratophyllum demersum HOM05D005775 ORTHO05D000023 7.5e-19 99.4 147 36.7
BolC4t23515H Brassica oleracea HOM05D005775 ORTHO05D000023 1.1e-12 79.0 48 83.3
Actinidia24862 Actinidia chinensis HOM05D005775 ORTHO05D000023 4.0e-12 77.0 305 22.6
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 1.9e-06 58.2 96 34.4


User provided reference genes

Program Settings