Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 4.6e-68 261.2 138 100.0
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 2.9e-22 109.0 77 63.6
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 2.9e-22 109.0 78 62.8
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 3.9e-22 108.6 76 65.8
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 3.9e-22 108.6 77 63.6
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 3.9e-22 108.6 77 63.6
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 6.6e-22 107.8 76 65.8
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 6.6e-22 107.8 77 62.3
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 6.6e-22 107.8 83 59.0
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 6.6e-22 107.8 77 63.6
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 6.6e-22 107.8 77 62.3
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 8.6e-22 107.5 77 62.3
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 8.6e-22 107.5 77 62.3
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 8.6e-22 107.5 77 63.6
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 8.6e-22 107.5 77 62.3
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 8.6e-22 107.5 77 63.6
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.1e-21 107.1 77 63.6
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 1.1e-21 107.1 77 62.3
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.1e-21 107.1 77 63.6
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 1.1e-21 107.1 76 61.8
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.1e-21 107.1 77 62.3
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.1e-21 107.1 77 62.3
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 1.1e-21 107.1 88 59.1
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.5e-21 106.7 77 62.3
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.5e-21 106.7 78 61.5
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 1.9e-21 106.3 77 62.3
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.5e-21 105.9 77 62.3
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 2.5e-21 105.9 76 64.5
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.5e-21 105.9 76 64.5
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.5e-21 105.9 78 62.8
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 2.5e-21 105.9 77 62.3
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 2.5e-21 105.9 77 61.0
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.5e-21 105.9 77 62.3
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.5e-21 105.9 77 62.3
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.5e-21 105.9 77 61.0
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.3e-21 105.5 77 61.0
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 3.3e-21 105.5 77 62.3
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 3.3e-21 105.5 77 62.3
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 3.3e-21 105.5 77 62.3
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 3.3e-21 105.5 81 59.3
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 3.3e-21 105.5 77 61.0
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 3.3e-21 105.5 84 58.3
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 4.3e-21 105.1 74 63.5
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 62.3
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 4.3e-21 105.1 76 64.5
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 4.3e-21 105.1 77 61.0
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 5.6e-21 104.8 77 61.0
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 5.6e-21 104.8 77 61.0
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 5.6e-21 104.8 77 62.3
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 5.6e-21 104.8 77 61.0
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 5.6e-21 104.8 76 61.8
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.3e-21 104.4 74 63.5
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.3e-21 104.4 74 63.5
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 61.0
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 61.0
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 7.3e-21 104.4 74 63.5
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 61.0
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 62.3
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 61.0
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 61.0
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 61.0
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 61.0
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 7.3e-21 104.4 74 63.5
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 7.3e-21 104.4 77 61.0
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 9.5e-21 104.0 76 63.2
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 9.5e-21 104.0 81 61.7
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 9.5e-21 104.0 83 56.6
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 9.5e-21 104.0 83 56.6
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 9.5e-21 104.0 74 63.5
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 9.5e-21 104.0 77 62.3
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.2e-20 103.6 76 63.2
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.2e-20 103.6 76 63.2
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 1.2e-20 103.6 76 63.2
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 1.2e-20 103.6 79 62.0
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.2e-20 103.6 77 61.0
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 1.2e-20 103.6 56 82.1
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.2e-20 103.6 76 61.8
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.2e-20 103.6 76 61.8
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.2e-20 103.6 74 62.2
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 1.6e-20 103.2 77 59.7
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.6e-20 103.2 56 80.4
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 1.6e-20 103.2 106 50.0
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.6e-20 103.2 56 82.1
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 1.6e-20 103.2 73 63.0
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.6e-20 103.2 77 59.7
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.6e-20 103.2 76 60.5
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.6e-20 103.2 77 61.0
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 1.6e-20 103.2 77 59.7
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 1.6e-20 103.2 77 61.0
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 1.6e-20 103.2 71 66.2
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 2.1e-20 102.8 74 60.8
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 2.1e-20 102.8 77 61.0
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 2.1e-20 102.8 77 59.7
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 2.8e-20 102.4 75 62.7
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 2.8e-20 102.4 75 62.7
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 2.8e-20 102.4 75 62.7
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 2.8e-20 102.4 75 62.7
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 2.8e-20 102.4 75 62.7
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 2.8e-20 102.4 73 63.0
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 3.6e-20 102.1 74 63.5
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 3.6e-20 102.1 77 59.7
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 3.6e-20 102.1 76 60.5
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 4.7e-20 101.7 77 59.7
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 6.1e-20 101.3 74 60.8
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 8.0e-20 100.9 53 83.0
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 8.0e-20 100.9 73 63.0
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 1.0e-19 100.5 77 58.4
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.0e-19 100.5 77 58.4
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.4e-19 100.1 74 60.8
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.4e-19 100.1 76 57.9
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.4e-19 100.1 77 59.7
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.3e-19 99.4 77 57.1
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 3.1e-19 99.0 77 58.4
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 4.0e-19 98.6 58 77.6
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 5.2e-19 98.2 56 76.8
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 5.2e-19 98.2 73 58.9
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 6.8e-19 97.8 76 60.5
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 6.8e-19 97.8 61 70.5
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.2e-18 97.1 52 78.8
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 1.5e-18 96.7 76 57.9
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 1.5e-18 96.7 83 50.6
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 3.4e-18 95.5 77 58.4
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 4.4e-18 95.1 76 59.2
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 4.4e-18 95.1 76 59.2
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.3e-17 93.6 53 77.4
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 2.2e-17 92.8 67 59.7
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 2.2e-17 92.8 93 50.5
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 6.4e-17 91.3 80 48.8
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.1e-16 90.5 61 68.9
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 2.0e-15 86.3 66 56.1
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 7.8e-15 84.3 48 70.8
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 6.6e-14 81.3 74 56.8
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.1e-11 73.9 74 51.4
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.4e-11 73.6 38 81.6
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 1.2e-10 70.5 39 74.4
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 1.2e-10 70.5 39 74.4
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.8e-10 68.2 38 76.3
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 7.5e-10 67.8 57 52.6
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 6.4e-09 64.7 42 69.0
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.0e-06 57.4 53 49.1
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.0e-06 57.4 27 81.5


User provided reference genes

Program Settings