Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 3.7e-246 854.7 534 100.0
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 3.8e-203 711.8 529 85.4
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.1e-202 710.3 520 86.5
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-201 706.8 536 84.1
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 4.0e-200 701.8 531 83.6
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 8.9e-200 700.7 521 85.4
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 4.4e-199 698.4 520 85.8
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 9.8e-199 697.2 537 84.4
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 1.1e-194 683.7 525 83.6
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 5.6e-194 681.4 520 82.3
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.2e-188 663.7 530 79.4
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 2.8e-185 652.5 531 80.2
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 6.8e-184 647.9 522 81.2
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 5.8e-183 644.8 525 79.4
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 1.1e-178 630.6 537 74.3
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 3.2e-173 612.5 457 84.5
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.8e-168 596.7 542 71.4
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 6.9e-144 515.0 512 69.1
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 6.0e-140 501.9 567 59.6
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.8e-139 500.4 541 61.6
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 5.1e-139 498.8 542 61.4
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.1e-138 497.7 552 60.9
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.5e-138 497.3 552 61.2
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 2.2e-137 493.4 553 62.4
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 1.2e-135 487.6 546 61.9
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 1.5e-135 487.3 561 59.7
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 2.0e-135 486.9 540 62.0
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.0e-134 484.6 553 60.9
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.2e-134 483.4 541 53.2
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 2.9e-134 483.0 529 60.9
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.9e-133 480.3 546 60.6
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 4.2e-133 479.2 579 58.9
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 4.2e-133 479.2 521 62.0
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 7.2e-133 478.4 543 61.5
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 6.1e-132 475.3 553 59.0
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 2.3e-131 473.4 535 59.3
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.1e-131 472.2 537 63.1
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 6.7e-131 471.9 542 62.4
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.5e-130 470.7 539 58.8
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.0e-130 470.3 544 61.8
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 3.3e-130 469.5 534 60.5
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 7.4e-130 468.4 529 62.6
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 3.7e-129 466.1 574 56.3
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 2.4e-128 463.4 564 58.2
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 2.4e-128 463.4 535 60.6
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 4.1e-128 462.6 538 62.5
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 4.5e-127 459.1 537 60.1
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 4.5e-127 459.1 524 61.3
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 4.5e-127 459.1 540 61.5
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 7.7e-127 458.4 547 62.2
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 1.3e-126 457.6 544 59.9
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 1.7e-126 457.2 531 62.3
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 3.8e-126 456.1 541 60.1
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 6.5e-126 455.3 532 60.0
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 8.5e-126 454.9 539 59.0
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 8.5e-126 454.9 564 57.8
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 1.4e-125 454.1 551 58.6
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 3.2e-125 453.0 573 56.9
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 1.0e-123 448.0 533 60.8
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 1.8e-123 447.2 551 57.5
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 1.8e-123 447.2 558 55.7
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 2.3e-123 446.8 528 53.6
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 3.0e-123 446.4 531 50.8
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 3.9e-123 446.0 541 56.9
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 5.1e-123 445.7 554 59.2
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 5.1e-123 445.7 568 58.1
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.1e-122 444.5 570 52.6
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.6e-122 443.4 550 57.3
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 4.4e-122 442.6 542 56.8
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 1.4e-120 437.6 521 58.3
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 2.4e-120 436.8 552 59.2
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 2.4e-120 436.8 548 57.1
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 9.1e-120 434.9 567 55.7
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.2e-119 434.5 539 58.6
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 1.5e-119 434.1 570 53.7
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 2.0e-119 433.7 529 59.4
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 3.5e-119 433.0 602 51.8
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 2.2e-118 430.3 534 58.4
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 2.9e-118 429.9 539 59.6
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 3.8e-118 429.5 615 55.6
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.4e-117 427.6 539 58.6
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 9.4e-117 424.9 541 54.0
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 3.9e-115 419.5 577 53.9
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 2.6e-114 416.8 552 50.9
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 5.7e-114 415.6 526 55.5
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.4e-114 415.2 521 56.6
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 7.4e-114 415.2 525 48.6
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.3e-113 414.5 516 58.3
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 1.3e-113 414.5 546 55.1
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.7e-113 412.9 524 56.3
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.7e-113 412.9 517 59.4
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 6.3e-113 412.1 517 60.3
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 8.2e-113 411.8 565 55.6
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 1.4e-112 411.0 536 52.8
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.2e-111 407.9 556 53.1
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 3.5e-111 406.4 554 56.3
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.5e-109 401.0 533 48.6
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.9e-109 400.6 486 50.8
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 2.5e-109 400.2 567 56.3
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 4.7e-108 396.0 508 48.4
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 6.1e-108 395.6 518 49.4
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.5e-106 391.0 543 53.2
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 3.1e-104 383.3 562 54.3
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.2e-100 371.3 539 55.3
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 6.1e-100 369.0 513 57.7
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.4e-99 367.9 534 53.6
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 1.1e-96 358.2 527 48.0
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.4e-88 331.3 295 62.7
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 7.0e-88 328.9 581 49.4
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 4.5e-87 326.2 344 59.6
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.6e-82 310.5 532 43.8
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 4.1e-80 303.1 262 69.5
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 3.0e-78 297.0 482 47.1
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 3.9e-78 296.6 563 46.2
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 9.5e-77 292.0 513 38.6
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 5.2e-75 286.2 483 41.2
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 5.4e-72 276.2 278 64.0
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 9.2e-72 275.4 564 36.7
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 3.9e-70 270.0 533 43.0
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 5.8e-66 256.1 361 52.6
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 3.7e-65 253.4 179 100.0
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 5.4e-56 223.0 198 62.6
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 7.1e-56 222.6 167 72.5
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 7.8e-55 219.2 148 74.3
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 5.1e-54 216.5 241 51.9
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.8e-51 208.0 369 51.2
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 3.1e-51 207.2 220 58.2
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 3.1e-51 207.2 220 58.2
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 3.4e-50 203.8 342 46.8
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 2.9e-49 200.7 244 47.5
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 2.5e-45 187.6 125 78.4
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 9.6e-37 159.1 280 38.9
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.3e-29 134.0 100 70.0
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.0e-26 124.8 142 51.4
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 3.3e-21 107.5 154 46.1
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.0e-19 99.4 62 77.4
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-18 99.0 102 60.8
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.3e-17 95.5 267 30.0
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 6.1e-15 86.7 63 69.8
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 1.0e-14 85.9 48 87.5
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 4.3e-13 80.5 85 52.9
BcaC06g34714 Brassica carinata HOM05D000589 ORTHO05D001885 7.4e-13 79.7 46 87.0
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.1e-11 75.9 79 50.6
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.8e-11 75.1 77 49.4
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 2.4e-11 74.7 69 59.4
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 2.6e-10 71.2 66 63.6
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.0e-09 67.0 69 52.2
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 6.5e-09 66.6 67 56.7
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.2e-08 63.9 37 78.4
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 6.7e-06 56.6 100 38.0


User provided reference genes

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