Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09745 Brassica carinata HOM05D000084 ORTHO05D091530 9.6e-32 139.4 65 100.0
CARHR277490 Cardamine hirsuta HOM05D000084 ORTHO05D000639 1.9e-11 72.0 51 70.6
AL8G40730 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 4.2e-11 70.9 43 81.4
AT5G63610 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 4.2e-11 70.9 43 81.4
Thhalv10004142m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 4.2e-11 70.9 43 81.4
Sp2g26700 Schrenkiella parvula HOM05D000084 ORTHO05D000639 4.2e-11 70.9 43 81.4
CDE06G1260 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 5.5e-11 70.5 51 68.6
Aa31LG1G18320 Aethionema arabicum HOM05D000084 ORTHO05D000639 9.3e-11 69.7 51 68.6
Carub.0008s2437 Capsella rubella HOM05D000084 ORTHO05D000639 9.3e-11 69.7 43 79.1
Sed0023536 Sechium edule HOM05D000084 ORTHO05D000639 9.3e-11 69.7 54 63.0
BcaB04g19936 Brassica carinata HOM05D000084 ORTHO05D000639 1.6e-10 68.9 43 79.1
BcaC04g23342 Brassica carinata HOM05D000084 ORTHO05D000639 1.6e-10 68.9 43 79.1
A09p08370 Brassica napus HOM05D000084 ORTHO05D000639 1.6e-10 68.9 43 79.1
C09p09450 Brassica napus HOM05D000084 ORTHO05D000639 1.6e-10 68.9 43 79.1
BolC9t53857H Brassica oleracea HOM05D000084 ORTHO05D000639 1.6e-10 68.9 43 79.1
BraA09t36486Z Brassica rapa HOM05D000084 ORTHO05D000639 1.6e-10 68.9 43 79.1
ATR0665G647 Amborella trichopoda HOM05D000084 ORTHO05D000639 2.1e-10 68.6 51 64.7
MBI06_g01069_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000639 2.1e-10 68.6 51 66.7
THA.LOC104818409 Tarenaya hassleriana HOM05D000084 ORTHO05D000639 2.1e-10 68.6 51 68.6
MSTRG.23481 Avicennia marina HOM05D000084 ORTHO05D000639 2.7e-10 68.2 51 66.7
Cpa.g.sc1878.1 Carica papaya HOM05D000084 ORTHO05D000639 2.7e-10 68.2 43 79.1
ClCG04G001090 Citrullus lanatus HOM05D000084 ORTHO05D000639 2.7e-10 68.2 51 66.7
COL.COLO4_10747 Corchorus olitorius HOM05D000084 ORTHO05D000639 2.7e-10 68.2 43 79.1
MELO3C009014.2 Cucumis melo HOM05D000084 ORTHO05D000639 2.7e-10 68.2 51 66.7
CsaV3_4G031270 Cucumis sativus L. HOM05D000084 ORTHO05D000639 2.7e-10 68.2 51 66.7
Duzib084G0398 Durio zibethinus HOM05D000084 ORTHO05D000639 2.7e-10 68.2 43 79.1
Duzib205G1637 Durio zibethinus HOM05D000084 ORTHO05D000639 2.7e-10 68.2 43 79.1
MD15G1137900 Malus domestica HOM05D000084 ORTHO05D000639 2.7e-10 68.2 51 66.7
GSVIVG01022366001 Vitis vinifera HOM05D000084 ORTHO05D000639 3.5e-10 67.8 51 66.7
CDE08G0532 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 6.1e-10 67.0 51 64.7
Ciclev10019965m.g Citrus clementina HOM05D000084 ORTHO05D000639 6.1e-10 67.0 43 76.7
Migut.H00834 Erythranthe guttata HOM05D000084 ORTHO05D000639 6.1e-10 67.0 50 68.0
Gohir.A13G011200 Gossypium hirsutum HOM05D000084 ORTHO05D000639 6.1e-10 67.0 43 76.7
Gohir.D09G184000 Gossypium hirsutum HOM05D000084 ORTHO05D000639 6.1e-10 67.0 43 76.7
Gohir.D13G011900 Gossypium hirsutum HOM05D000084 ORTHO05D000639 6.1e-10 67.0 43 76.7
Gorai.006G206400 Gossypium raimondii HOM05D000084 ORTHO05D000639 6.1e-10 67.0 43 76.7
Gorai.013G013100 Gossypium raimondii HOM05D000084 ORTHO05D000639 6.1e-10 67.0 43 76.7
Thecc.03G302600 Theobroma cacao HOM05D000084 ORTHO05D000639 6.1e-10 67.0 43 76.7
Haze_25346 Corylus avellana HOM05D000084 ORTHO05D000639 7.9e-10 66.6 45 75.6
FvH4_1g25340 Fragaria vesca HOM05D000084 ORTHO05D000639 7.9e-10 66.6 51 64.7
FAN19G1604 Fragaria x ananassa HOM05D000084 ORTHO05D000639 7.9e-10 66.6 51 64.7
Os10g0580300 Oryza sativa ssp. japonica HOM05D000084 ORTHO05D000639 7.9e-10 66.6 51 64.7
PSO170G4148 Papaver somniferum HOM05D000084 ORTHO05D000639 7.9e-10 66.6 50 68.0
Sed0026349 Sechium edule HOM05D000084 ORTHO05D000639 7.9e-10 66.6 54 61.1
EL10Ac4g09669 Beta vulgaris HOM05D000084 ORTHO05D000639 1.0e-09 66.2 51 66.7
AUR62000549 Chenopodium quinoa HOM05D000084 ORTHO05D000639 1.0e-09 66.2 51 66.7
Manes.09G052700 Manihot esculenta HOM05D000084 ORTHO05D000639 1.0e-09 66.2 43 76.7
Prupe.4G280700 Prunus persica HOM05D000084 ORTHO05D000639 1.0e-09 66.2 43 76.7
PGR102G2481 Punica granatum HOM05D000084 ORTHO05D000639 1.0e-09 66.2 43 76.7
SGA_v2.0_scaffold211G42170 Striga asiatica HOM05D000084 ORTHO05D000639 1.0e-09 66.2 50 68.0
Mapoly0129s0030 Marchantia polymorpha HOM05D000084 ORTHO05D000639 1.3e-09 65.9 51 60.8
TPR.G7861 Trifolium pratense HOM05D000084 ORTHO05D000639 1.3e-09 65.9 50 66.0
Zm00001eb225020 Zea mays HOM05D000084 ORTHO05D000639 1.3e-09 65.9 49 67.3
Atru.chr9.1943 Acer truncatum HOM05D000084 ORTHO05D000639 1.8e-09 65.5 43 74.4
Oeu038346.1 Olea europaea HOM05D000084 ORTHO05D000639 1.8e-09 65.5 50 66.0
QL06p045312 Quercus lobata HOM05D000084 ORTHO05D000639 1.8e-09 65.5 50 66.0
Solyc12g027870.1 Solanum lycopersicum HOM05D000084 ORTHO05D000639 1.8e-09 65.5 43 76.7
Sopen12g013310 Solanum pennellii HOM05D000084 ORTHO05D000639 1.8e-09 65.5 43 76.7
Aqoxy6G00240 Aquilegia oxysepala HOM05D000084 ORTHO05D000639 2.3e-09 65.1 50 64.0
arahy.Tifrunner.gnm1.ann1.2JWH31 Arachis hypogaea HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
arahy.Tifrunner.gnm1.ann1.LW25T7 Arachis hypogaea HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
DCAR_022245 Daucus carota HOM05D000084 ORTHO05D000639 2.3e-09 65.1 50 66.0
ECA233G5645 Erigeron canadensis HOM05D000084 ORTHO05D000639 2.3e-09 65.1 50 66.0
Glyma.05G195300 Glycine max HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
Glyma.08G002900 Glycine max HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
Nn5g28342 Nelumbo nucifera HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
Phvul.002G275500 Phaseolus vulgaris HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
Potri.001G088000 Populus trichocarpa HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
Sc16g0009660 Simmondsia chinensis HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 76.7
TWI60G1144 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 2.3e-09 65.1 51 62.7
HPP92_021119 Vanilla planifolia HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
VMungo0251G1725 Vigna mungo HOM05D000084 ORTHO05D000639 2.3e-09 65.1 43 74.4
AagrBONN_evm.TU.Sc2ySwM_344.250 Anthoceros agrestis HOM05D000084 ORTHO05D000639 3.0e-09 64.7 51 60.8
CiPaw.04G077500 Carya illinoinensis HOM05D000084 ORTHO05D000639 3.0e-09 64.7 43 74.4
Cc07_g19430 Coffea canephora HOM05D000084 ORTHO05D000639 3.0e-09 64.7 50 64.0
Dinv08214 Davidia involucrata HOM05D000084 ORTHO05D000639 3.0e-09 64.7 43 74.4
MD00G1110700 Malus domestica HOM05D000084 ORTHO05D000639 3.0e-09 64.7 43 74.4
SHI06952 Sapria himalayana HOM05D000084 ORTHO05D000639 3.0e-09 64.7 43 74.4
Ca_17000_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 3.9e-09 64.3 50 64.0
Ca_17027_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000639 3.9e-09 64.3 50 64.0
Lj1g0010965 Lotus japonicus HOM05D000084 ORTHO05D000639 3.9e-09 64.3 50 64.0
Lj1g0027012 Lotus japonicus HOM05D000084 ORTHO05D000639 3.9e-09 64.3 50 64.0
Medtr3g096960 Medicago truncatula HOM05D000084 ORTHO05D000639 3.9e-09 64.3 50 64.0
Psat5g058480 Pisum sativum HOM05D000084 ORTHO05D000639 3.9e-09 64.3 50 64.0
Rhsim08G0001400 Rhododendron simsii HOM05D000084 ORTHO05D000639 3.9e-09 64.3 50 64.0
TAR376G0720 Trochodendron aralioides HOM05D000084 ORTHO05D000639 3.9e-09 64.3 43 72.1
vmacro18678 Vaccinium macrocarpon HOM05D000084 ORTHO05D000639 3.9e-09 64.3 43 74.4
FAN23G1911 Fragaria x ananassa HOM05D000084 ORTHO05D000639 5.1e-09 63.9 43 72.1
FAN26G0094 Fragaria x ananassa HOM05D000084 ORTHO05D000639 5.1e-09 63.9 43 72.1
Gohir.A09G189200 Gossypium hirsutum HOM05D000084 ORTHO05D000639 5.1e-09 63.9 42 76.2
Lsat_1_v5_gn_5_68981 Lactuca sativa HOM05D000084 ORTHO05D000639 5.1e-09 63.9 50 64.0
Peaxi162Scf00699g00415 Petunia axillaris HOM05D000084 ORTHO05D000639 5.1e-09 63.9 50 64.0
RcHm_v2.0_Chr2g0123381 Rosa chinensis HOM05D000084 ORTHO05D000639 5.1e-09 63.9 43 72.1
HPP92_014422 Vanilla planifolia HOM05D000084 ORTHO05D000639 5.1e-09 63.9 42 78.6
Actinidia16519 Actinidia chinensis HOM05D000084 ORTHO05D000639 6.7e-09 63.5 43 72.1
Ah.02g117600 Amaranthus hybridus HOM05D000084 ORTHO05D000639 6.7e-09 63.5 50 64.0
CANSAT01G0286 Cannabis sativa HOM05D000084 ORTHO05D000639 6.7e-09 63.5 43 72.1
Glyma.04G207900 Glycine max HOM05D000084 ORTHO05D000639 6.7e-09 63.5 50 64.0
Lalb_Chr11g0068711 Lupinus albus HOM05D000084 ORTHO05D000639 6.7e-09 63.5 43 72.1
Potri.003G142900 Populus trichocarpa HOM05D000084 ORTHO05D000639 6.7e-09 63.5 43 72.1
Sabra03G0103500 Salix brachista HOM05D000084 ORTHO05D000639 6.7e-09 63.5 43 72.1
Aa31sc412G60 Aethionema arabicum HOM05D000084 ORTHO05D000639 8.7e-09 63.2 56 53.6
Eucgr.H05079 Eucalyptus grandis HOM05D000084 ORTHO05D000639 8.7e-09 63.2 50 64.0
HanXRQChr15g0468931 Helianthus annuus HOM05D000084 ORTHO05D000639 1.1e-08 62.8 50 64.0
Sabra01G0064400 Salix brachista HOM05D000084 ORTHO05D000639 1.1e-08 62.8 43 72.1
unitig_60.g25591 Utricularia gibba HOM05D000084 ORTHO05D000639 1.1e-08 62.8 43 72.1
FAN28G2683 Fragaria x ananassa HOM05D000084 ORTHO05D000639 1.5e-08 62.4 43 69.8
Lalb_Chr08g0238011 Lupinus albus HOM05D000084 ORTHO05D000639 1.5e-08 62.4 43 72.1
Hund21793 Selenicereus undatus HOM05D000084 ORTHO05D000639 1.5e-08 62.4 50 64.0
TWI60G0915 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 1.5e-08 62.4 51 60.8
Aa31LG4G14370 Aethionema arabicum HOM05D000084 ORTHO05D000639 1.9e-08 62.0 43 65.1
Dinv30328 Davidia involucrata HOM05D000084 ORTHO05D000639 1.9e-08 62.0 51 60.8
Pp3c19_12350 Physcomitrium patens HOM05D000084 ORTHO05D000639 1.9e-08 62.0 43 69.8
Pp3c22_16110 Physcomitrium patens HOM05D000084 ORTHO05D000639 1.9e-08 62.0 43 69.8
SMO203G0017 Selaginella moellendorffii HOM05D000084 ORTHO05D000639 4.3e-08 60.8 43 69.8
CBR_g69736 Chara braunii HOM05D000084 ORTHO05D000639 7.4e-08 60.1 43 69.8
PSO528G0033 Papaver somniferum HOM05D000084 ORTHO05D000639 1.3e-07 59.3 50 62.0
Glyma.06G157950 Glycine max HOM05D000084 ORTHO05D000639 1.1e-06 56.2 42 66.7
AUR62006902 Chenopodium quinoa HOM05D000084 ORTHO05D000639 1.4e-06 55.8 37 75.7
SEGI_03188 Sequoiadendron giganteum HOM05D000084 ORTHO05D000639 1.8e-06 55.5 37 73.0
Nitab4.5_0000420g0150 Nicotiana tabacum HOM05D000084 ORTHO05D000639 2.4e-06 55.1 37 73.0
Nitab4.5_0003946g0010 Nicotiana tabacum HOM05D000084 ORTHO05D000639 2.4e-06 55.1 37 73.0
Hund07215 Selenicereus undatus HOM05D000084 ORTHO05D000639 3.1e-06 54.7 37 73.0


User provided reference genes

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