Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09284 Brassica carinata HOM05D000999 ORTHO05D000961 1.5e-124 449.5 230 100.0
C04p10640 Brassica napus HOM05D000999 ORTHO05D000961 1.5e-95 353.2 221 86.4
BolC4t22655H Brassica oleracea HOM05D000999 ORTHO05D000961 1.5e-95 353.2 221 86.4
BraA05t19824Z Brassica rapa HOM05D000999 ORTHO05D000961 3.7e-94 348.6 221 85.1
A05p08560 Brassica napus HOM05D000999 ORTHO05D000961 1.0e-91 340.5 221 81.9
BcaC02g07522 Brassica carinata HOM05D000999 ORTHO05D000961 2.4e-77 292.7 221 76.0
BcaB06g28987 Brassica carinata HOM05D000999 ORTHO05D000961 2.2e-75 286.2 222 73.9
C04p65870 Brassica napus HOM05D000999 ORTHO05D000961 3.6e-73 278.9 223 72.2
BolC4t28091H Brassica oleracea HOM05D000999 ORTHO05D000961 3.6e-73 278.9 223 72.2
Thhalv10017074m.g Eutrema salsugineum HOM05D000999 ORTHO05D000961 3.0e-72 275.8 224 71.0
A04p28540 Brassica napus HOM05D000999 ORTHO05D000961 2.2e-70 269.6 223 70.4
BraA04t18332Z Brassica rapa HOM05D000999 ORTHO05D000961 2.2e-70 269.6 223 70.4
Sp4g19700 Schrenkiella parvula HOM05D000999 ORTHO05D000961 6.3e-70 268.1 226 71.2
AT2G37390 Arabidopsis thaliana HOM05D000999 ORTHO05D000961 3.8e-67 258.8 222 65.8
Carub.0004s1929 Capsella rubella HOM05D000999 ORTHO05D000961 8.6e-67 257.7 224 65.6
CARHR132210 Cardamine hirsuta HOM05D000999 ORTHO05D000961 8.6e-67 257.7 223 67.7
AL4G33770 Arabidopsis lyrata HOM05D000999 ORTHO05D000961 3.6e-65 252.3 222 65.8
AL4G34330 Arabidopsis lyrata HOM05D000999 ORTHO05D000961 1.0e-64 250.8 222 65.8
THA.LOC104823433 Tarenaya hassleriana HOM05D000999 ORTHO05D000961 1.1e-40 171.0 233 50.6
Thhalv10010661m.g Eutrema salsugineum HOM05D000999 ORTHO05D000961 2.3e-40 169.9 238 52.9
BraA09t40119Z Brassica rapa HOM05D000999 ORTHO05D000961 3.0e-35 152.9 241 48.1
AL5G34450 Arabidopsis lyrata HOM05D000999 ORTHO05D000961 3.3e-34 149.4 243 47.7
A09p46540 Brassica napus HOM05D000999 ORTHO05D000961 5.6e-34 148.7 241 48.1
AT3G53530 Arabidopsis thaliana HOM05D000999 ORTHO05D000961 1.1e-32 144.4 236 45.8
CARHR163440 Cardamine hirsuta HOM05D000999 ORTHO05D000961 3.1e-32 142.9 241 45.2
BcaB01g00266 Brassica carinata HOM05D000999 ORTHO05D000961 6.8e-32 141.7 238 47.1
BraA07t29853Z Brassica rapa HOM05D000999 ORTHO05D000961 2.0e-31 140.2 235 45.5
Sp5g08800 Schrenkiella parvula HOM05D000999 ORTHO05D000961 2.0e-31 140.2 238 47.1
BolC6t37332H Brassica oleracea HOM05D000999 ORTHO05D000961 4.4e-31 139.0 234 47.9
C08p28870 Brassica napus HOM05D000999 ORTHO05D000961 2.2e-30 136.7 241 46.1
THA.LOC104806592 Tarenaya hassleriana HOM05D000999 ORTHO05D000961 4.9e-30 135.6 234 43.6
BcaC07g39715 Brassica carinata HOM05D000999 ORTHO05D000961 6.4e-30 135.2 241 45.6
BolC8t50489H Brassica oleracea HOM05D000999 ORTHO05D000961 6.4e-30 135.2 241 45.6
A07p21710 Brassica napus HOM05D000999 ORTHO05D000961 8.4e-30 134.8 235 46.0
C06p21500 Brassica napus HOM05D000999 ORTHO05D000961 1.1e-29 134.4 231 45.5
BcaB02g07778 Brassica carinata HOM05D000999 ORTHO05D000961 9.2e-29 131.3 235 43.8
BcaC08g44632 Brassica carinata HOM05D000999 ORTHO05D000961 9.2e-29 131.3 231 45.0
Carub.0005s2011 Capsella rubella HOM05D000999 ORTHO05D000961 7.8e-28 128.3 243 47.3
Aa31LG5G22800 Aethionema arabicum HOM05D000999 ORTHO05D000961 1.3e-25 120.9 191 47.6
Glyma.13G133600 Glycine max HOM05D000999 ORTHO05D000961 1.6e-25 120.6 229 39.7
Glyma.10G045700 Glycine max HOM05D000999 ORTHO05D000961 4.4e-23 112.5 231 39.0
Phvul.001G171400 Phaseolus vulgaris HOM05D000999 ORTHO05D000961 4.9e-22 109.0 247 40.1
VMungo1383G0767 Vigna mungo HOM05D000999 ORTHO05D000961 1.9e-21 107.1 240 39.6
Gohir.A04G078800 Gossypium hirsutum HOM05D000999 ORTHO05D000961 9.3e-21 104.8 249 36.1
Lj5g0012379 Lotus japonicus HOM05D000999 ORTHO05D000961 2.1e-20 103.6 238 37.4
Glyma.03G174100 Glycine max HOM05D000999 ORTHO05D000961 2.7e-20 103.2 244 37.7
Gorai.009G423000 Gossypium raimondii HOM05D000999 ORTHO05D000961 2.7e-20 103.2 247 36.8
Gohir.D04G118000 Gossypium hirsutum HOM05D000999 ORTHO05D000961 3.5e-20 102.8 247 36.8
Migut.J00382 Erythranthe guttata HOM05D000999 ORTHO05D000961 6.0e-20 102.1 225 37.8
Glyma.19G175100 Glycine max HOM05D000999 ORTHO05D000961 7.8e-20 101.7 250 38.0
MSTRG.5696 Avicennia marina HOM05D000999 ORTHO05D000961 1.0e-19 101.3 235 37.9
BcaC08g44630 Brassica carinata HOM05D000999 ORTHO05D000961 6.6e-19 98.6 208 43.3
Medtr7g100450 Medicago truncatula HOM05D000999 ORTHO05D000961 1.9e-18 97.1 245 34.3
Phvul.L001741 Phaseolus vulgaris HOM05D000999 ORTHO05D000961 1.9e-18 97.1 224 37.5
Thecc.05G047000 Theobroma cacao HOM05D000999 ORTHO05D000961 1.9e-18 97.1 250 35.2
Duzib093G1882 Durio zibethinus HOM05D000999 ORTHO05D000961 3.3e-18 96.3 239 35.1
Lj1g0004558 Lotus japonicus HOM05D000999 ORTHO05D000961 4.3e-18 95.9 245 34.3
Cpa.g.sc114.4 Carica papaya HOM05D000999 ORTHO05D000961 7.3e-18 95.1 226 38.1
Cfa017449 Carpinus fangiana HOM05D000999 ORTHO05D000961 9.6e-18 94.7 242 36.0
Duzib128G0279 Durio zibethinus HOM05D000999 ORTHO05D000961 9.6e-18 94.7 246 35.0
TPR.G29932 Trifolium pratense HOM05D000999 ORTHO05D000961 9.6e-18 94.7 237 36.3
CAN.G687.6 Capsicum annuum HOM05D000999 ORTHO05D000961 2.1e-17 93.6 227 36.6
Gohir.A13G093490 Gossypium hirsutum HOM05D000999 ORTHO05D000961 2.8e-17 93.2 219 35.6
VMungo0720G1192 Vigna mungo HOM05D000999 ORTHO05D000961 2.8e-17 93.2 232 37.1
Ca_09595_v3 Cicer arietinum L. HOM05D000999 ORTHO05D000961 3.6e-17 92.8 224 34.8
PGSC0003DMG400017602 Solanum tuberosum HOM05D000999 ORTHO05D000961 3.6e-17 92.8 227 37.0
Psat3g047320 Pisum sativum HOM05D000999 ORTHO05D000961 4.8e-17 92.4 225 35.1
Prupe.6G247400 Prunus persica HOM05D000999 ORTHO05D000961 1.4e-16 90.9 262 33.2
RcHm_v2.0_Chr3g0467751 Rosa chinensis HOM05D000999 ORTHO05D000961 1.4e-16 90.9 251 33.5
Haze_20716 Corylus avellana HOM05D000999 ORTHO05D000961 1.8e-16 90.5 247 36.0
Peaxi162Scf00017g01716 Petunia axillaris HOM05D000999 ORTHO05D000961 1.8e-16 90.5 232 35.3
Psat6g068560 Pisum sativum HOM05D000999 ORTHO05D000961 2.4e-16 90.1 228 34.2
FAN14G5219 Fragaria x ananassa HOM05D000999 ORTHO05D000961 3.1e-16 89.7 250 33.2
Sabra16G0088600 Salix brachista HOM05D000999 ORTHO05D000961 3.1e-16 89.7 241 32.0
TPR.G36970 Trifolium pratense HOM05D000999 ORTHO05D000961 3.1e-16 89.7 245 34.3
Gorai.001G250300 Gossypium raimondii HOM05D000999 ORTHO05D000961 4.0e-16 89.4 219 34.7
QL07p046572 Quercus lobata HOM05D000999 ORTHO05D000961 4.0e-16 89.4 232 34.1
Aqoxy4G03061 Aquilegia oxysepala HOM05D000999 ORTHO05D000961 5.3e-16 89.0 245 37.1
Ciclev10012329m.g Citrus clementina HOM05D000999 ORTHO05D000961 5.3e-16 89.0 251 33.9
FAN02G0868 Fragaria x ananassa HOM05D000999 ORTHO05D000961 6.9e-16 88.6 250 33.2
Solyc10g085910.2 Solanum lycopersicum HOM05D000999 ORTHO05D000961 6.9e-16 88.6 232 34.9
Sopen10g035290 Solanum pennellii HOM05D000999 ORTHO05D000961 6.9e-16 88.6 232 34.9
SGA_v2.0_scaffold94G28632 Striga asiatica HOM05D000999 ORTHO05D000961 6.9e-16 88.6 230 36.1
Potri.006G213900 Populus trichocarpa HOM05D000999 ORTHO05D000961 1.2e-15 87.8 245 32.7
GSVIVG01025598001 Vitis vinifera HOM05D000999 ORTHO05D000961 1.5e-15 87.4 231 35.1
MELO3C003095.2 Cucumis melo HOM05D000999 ORTHO05D000961 2.0e-15 87.0 234 34.2
FvH4_6g14630 Fragaria vesca HOM05D000999 ORTHO05D000961 2.0e-15 87.0 251 33.1
Lalb_Chr02g0153281 Lupinus albus HOM05D000999 ORTHO05D000961 2.0e-15 87.0 244 32.0
ClCG04G008530 Citrullus lanatus HOM05D000999 ORTHO05D000961 2.6e-15 86.7 222 35.1
SalBow4G2001 Salvia bowleyana HOM05D000999 ORTHO05D000961 2.6e-15 86.7 222 35.6
CiPaw.09G187200 Carya illinoinensis HOM05D000999 ORTHO05D000961 3.4e-15 86.3 249 34.1
Ca_08797_v3 Cicer arietinum L. HOM05D000999 ORTHO05D000961 4.5e-15 85.9 246 31.7
MD04G1118300 Malus domestica HOM05D000999 ORTHO05D000961 4.5e-15 85.9 254 32.3
Medtr1g067560 Medicago truncatula HOM05D000999 ORTHO05D000961 7.6e-15 85.1 235 33.2
Nitab4.5_0002818g0030 Nicotiana tabacum HOM05D000999 ORTHO05D000961 7.6e-15 85.1 236 33.9
CANSAT80G0190 Cannabis sativa HOM05D000999 ORTHO05D000961 9.9e-15 84.7 268 33.6
FAN09G2510 Fragaria x ananassa HOM05D000999 ORTHO05D000961 9.9e-15 84.7 251 32.7
Nn2g10519 Nelumbo nucifera HOM05D000999 ORTHO05D000961 9.9e-15 84.7 223 34.5
SalBow4G0218 Salvia bowleyana HOM05D000999 ORTHO05D000961 9.9e-15 84.7 222 35.6
FAN05G5331 Fragaria x ananassa HOM05D000999 ORTHO05D000961 1.3e-14 84.3 250 32.0
Potri.016G080400 Populus trichocarpa HOM05D000999 ORTHO05D000961 2.2e-14 83.6 247 32.0
TWI77G0893 Tripterygium wilfordii HOM05D000999 ORTHO05D000961 2.9e-14 83.2 222 32.9
MD12G1133800 Malus domestica HOM05D000999 ORTHO05D000961 3.8e-14 82.8 257 33.5
Nitab4.5_0000643g0010 Nicotiana tabacum HOM05D000999 ORTHO05D000961 4.9e-14 82.4 232 34.1
CsaV3_4G024620 Cucumis sativus L. HOM05D000999 ORTHO05D000961 6.4e-14 82.0 235 34.9
Sabra06G0164800 Salix brachista HOM05D000999 ORTHO05D000961 8.4e-14 81.6 249 32.5
Aa31LG10G9590 Aethionema arabicum HOM05D000999 ORTHO05D000961 1.1e-13 81.3 226 35.4
Manes.08G074600 Manihot esculenta HOM05D000999 ORTHO05D000961 1.4e-13 80.9 248 31.0
CiPaw.10G141500 Carya illinoinensis HOM05D000999 ORTHO05D000961 1.9e-13 80.5 249 32.1
Nn2g12857 Nelumbo nucifera HOM05D000999 ORTHO05D000961 1.9e-13 80.5 222 32.4
Oeu029812.1 Olea europaea HOM05D000999 ORTHO05D000961 1.9e-13 80.5 242 33.5
PSO541G0988 Papaver somniferum HOM05D000999 ORTHO05D000961 3.2e-13 79.7 276 28.6
Nitab4.5_0000725g0130 Nicotiana tabacum HOM05D000999 ORTHO05D000961 5.4e-13 79.0 230 33.5
PGR004G0431 Punica granatum HOM05D000999 ORTHO05D000961 5.4e-13 79.0 257 31.5
TWI53G1282 Tripterygium wilfordii HOM05D000999 ORTHO05D000961 5.4e-13 79.0 235 31.9
Manes.09G085600 Manihot esculenta HOM05D000999 ORTHO05D000961 1.6e-12 77.4 247 30.8
Nitab4.5_0008047g0010 Nicotiana tabacum HOM05D000999 ORTHO05D000961 1.6e-12 77.4 246 33.3
Sed0028169 Sechium edule HOM05D000999 ORTHO05D000961 1.6e-12 77.4 219 33.3
Dinv35660 Davidia involucrata HOM05D000999 ORTHO05D000961 2.1e-12 77.0 219 34.2
Hma1.2p1_0111F.1_g053230 Hydrangea macrophylla HOM05D000999 ORTHO05D000961 2.1e-12 77.0 240 33.3
MSTRG.10277 Avicennia marina HOM05D000999 ORTHO05D000961 2.7e-12 76.6 223 34.1
MBI05_g07859_MAGBIO Magnolia biondii HOM05D000999 ORTHO05D000961 3.5e-12 76.3 217 31.8
Hund24046 Selenicereus undatus HOM05D000999 ORTHO05D000961 3.5e-12 76.3 242 32.2
Carub.0006s0141 Capsella rubella HOM05D000999 ORTHO05D012743 4.6e-12 75.9 298 29.2
CARHR210750 Cardamine hirsuta HOM05D000999 ORTHO05D012743 6.0e-12 75.5 302 28.8
QL01p033621 Quercus lobata HOM05D000999 ORTHO05D000961 6.0e-12 75.5 217 30.0
Haze_24015 Corylus avellana HOM05D000999 ORTHO05D000961 1.0e-11 74.7 227 36.6
Eucgr.A01222 Eucalyptus grandis HOM05D000999 ORTHO05D000961 1.3e-11 74.3 213 33.8
SalBow3G0232 Salvia bowleyana HOM05D000999 ORTHO05D000961 1.8e-11 73.9 215 35.3
AT5G02600 Arabidopsis thaliana HOM05D000999 ORTHO05D012743 2.3e-11 73.6 295 28.1
AL6G11880 Arabidopsis lyrata HOM05D000999 ORTHO05D012743 3.9e-11 72.8 295 27.8
Sed0021716 Sechium edule HOM05D000999 ORTHO05D000961 6.7e-11 72.0 214 33.6
Sed0005368 Sechium edule HOM05D000999 ORTHO05D000961 1.1e-10 71.2 250 34.0
CiPaw.13G100600 Carya illinoinensis HOM05D000999 ORTHO05D000961 1.5e-10 70.9 218 29.8
Migut.L01630 Erythranthe guttata HOM05D000999 ORTHO05D000961 1.5e-10 70.9 240 30.4
COL.COLO4_09161 Corchorus olitorius HOM05D000999 ORTHO05D000961 1.9e-10 70.5 255 31.0
Actinidia37250 Actinidia chinensis HOM05D000999 ORTHO05D000961 2.5e-10 70.1 220 31.4
Dinv37220 Davidia involucrata HOM05D000999 ORTHO05D000961 2.5e-10 70.1 217 31.8
Eucgr.K03174 Eucalyptus grandis HOM05D000999 ORTHO05D000961 2.5e-10 70.1 231 33.8
Cc06_g03140 Coffea canephora HOM05D000999 ORTHO05D000961 3.3e-10 69.7 299 28.8
Sc20g0004370 Simmondsia chinensis HOM05D000999 ORTHO05D000961 3.3e-10 69.7 230 31.7
Actinidia19751 Actinidia chinensis HOM05D000999 ORTHO05D000961 5.6e-10 68.9 201 33.3
TAR369G0211 Trochodendron aralioides HOM05D000999 ORTHO05D000961 5.6e-10 68.9 268 30.2
arahy.Tifrunner.gnm1.ann1.VWR9F9 Arachis hypogaea HOM05D000999 ORTHO05D000961 1.3e-09 67.8 238 29.0
Thhalv10015743m.g Eutrema salsugineum HOM05D000999 ORTHO05D012743 1.3e-09 67.8 297 27.9
MBI14_g26676_MAGBIO Magnolia biondii HOM05D000999 ORTHO05D000961 1.3e-09 67.8 222 32.4
MBI14_g45120_MAGBIO Magnolia biondii HOM05D000999 ORTHO05D000961 1.3e-09 67.8 222 32.4
PSO675G0661 Papaver somniferum HOM05D000999 ORTHO05D000961 1.6e-09 67.4 274 29.2
Duzib170G0162 Durio zibethinus HOM05D000999 ORTHO05D000961 2.8e-09 66.6 225 32.0
Thecc.09G329300 Theobroma cacao HOM05D000999 ORTHO05D000961 2.8e-09 66.6 218 31.7
EL10Ac5g12529 Beta vulgaris HOM05D000999 ORTHO05D000961 3.7e-09 66.2 261 30.7
ATR0759G031 Amborella trichopoda HOM05D000999 ORTHO05D000961 4.8e-09 65.9 225 30.2
Duzib168G2065 Durio zibethinus HOM05D000999 ORTHO05D000961 4.8e-09 65.9 220 30.5
TWI79G0459 Tripterygium wilfordii HOM05D000999 ORTHO05D000961 4.8e-09 65.9 226 30.5
vmacro20107 Vaccinium macrocarpon HOM05D000999 ORTHO05D000961 6.2e-09 65.5 202 32.2
MELO3C009286.2 Cucumis melo HOM05D000999 ORTHO05D000961 1.8e-08 63.9 214 33.6
SGA_v2.0_scaffold75G24910 Striga asiatica HOM05D000999 ORTHO05D000961 1.8e-08 63.9 186 32.8
Aqoxy2G01986 Aquilegia oxysepala HOM05D000999 ORTHO05D000961 2.4e-08 63.5 244 29.5
BraA02t04725Z Brassica rapa HOM05D000999 ORTHO05D012743 2.4e-08 63.5 295 27.8
Migut.L01628 Erythranthe guttata HOM05D000999 ORTHO05D000961 3.1e-08 63.2 239 31.0
ClCG10G020850 Citrullus lanatus HOM05D000999 ORTHO05D000961 4.0e-08 62.8 207 30.9
COL.COLO4_18433 Corchorus olitorius HOM05D000999 ORTHO05D000961 4.0e-08 62.8 217 33.2
DCAR_017761 Daucus carota HOM05D000999 ORTHO05D000961 5.3e-08 62.4 226 31.0
Ah.12g052280 Amaranthus hybridus HOM05D000999 ORTHO05D000961 9.0e-08 61.6 241 30.3
Gohir.D05G098500 Gossypium hirsutum HOM05D000999 ORTHO05D000961 1.2e-07 61.2 222 30.2
Eucgr.B02409 Eucalyptus grandis HOM05D000999 ORTHO05D000961 1.5e-07 60.8 230 31.3
Sp6g39910 Schrenkiella parvula HOM05D000999 ORTHO05D012743 1.5e-07 60.8 303 27.1
BolC9t60136H Brassica oleracea HOM05D000999 ORTHO05D012743 2.0e-07 60.5 306 25.8
Gohir.A05G098400 Gossypium hirsutum HOM05D000999 ORTHO05D000961 2.6e-07 60.1 222 30.2
MD03G1102100 Malus domestica HOM05D000999 ORTHO05D000961 2.6e-07 60.1 227 29.1
Rhsim05G0186100 Rhododendron simsii HOM05D000999 ORTHO05D000961 2.6e-07 60.1 292 28.4
Peaxi162Scf00039g00614 Petunia axillaris HOM05D000999 ORTHO05D000961 3.4e-07 59.7 232 27.2
HPP92_019093 Vanilla planifolia HOM05D000999 ORTHO05D000961 3.4e-07 59.7 92 40.2
HanXRQChr01g0026521 Helianthus annuus HOM05D000999 ORTHO05D035150 4.5e-07 59.3 212 28.3
Actinidia07075 Actinidia chinensis HOM05D000999 ORTHO05D000961 7.6e-07 58.5 228 28.9
A10p33040 Brassica napus HOM05D000999 ORTHO05D012743 1.0e-06 58.2 170 32.4
TAR157G0001 Trochodendron aralioides HOM05D000999 ORTHO05D000961 1.0e-06 58.2 294 27.9
Gohir.D03G130500 Gossypium hirsutum HOM05D000999 ORTHO05D000961 1.3e-06 57.8 92 39.1
Gorai.003G137300 Gossypium raimondii HOM05D000999 ORTHO05D000961 1.3e-06 57.8 92 39.1
Gorai.009G102100 Gossypium raimondii HOM05D000999 ORTHO05D000961 1.3e-06 57.8 223 30.5
Gohir.A03G037900 Gossypium hirsutum HOM05D000999 ORTHO05D000961 2.2e-06 57.0 92 39.1
Prupe.6G007500 Prunus persica HOM05D000999 ORTHO05D000961 2.2e-06 57.0 228 29.8
Oeu060060.1 Olea europaea HOM05D000999 ORTHO05D000961 2.9e-06 56.6 115 37.4
CsaV3_3G035170 Cucumis sativus L. HOM05D000999 ORTHO05D000961 4.9e-06 55.8 213 32.4
Dinv26280 Davidia involucrata HOM05D000999 ORTHO05D000961 6.4e-06 55.5 102 36.3
unitig_578.g16392 Utricularia gibba HOM05D000999 ORTHO05D000961 8.4e-06 55.1 185 28.6


User provided reference genes

Program Settings