Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 9.2e-69 263.5 136 100.0
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 1.8e-43 179.5 223 52.5
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 3.9e-43 178.3 223 52.5
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 3.9e-43 178.3 226 51.8
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 8.7e-43 177.2 223 52.0
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 8.7e-43 177.2 223 52.0
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 8.7e-43 177.2 226 51.3
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 8.7e-43 177.2 223 52.0
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 8.7e-43 177.2 223 52.0
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 8.7e-43 177.2 223 52.5
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 1.5e-42 176.4 231 50.6
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 1.3e-41 173.3 233 49.8
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 1.6e-41 172.9 223 51.1
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 1.4e-40 169.9 223 48.9
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 9.0e-40 167.2 223 48.9
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.5e-39 166.4 223 48.9
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 2.0e-39 166.0 223 48.4
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 4.5e-39 164.9 223 48.0
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 4.5e-39 164.9 223 48.4
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 7.6e-39 164.1 223 48.4
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 2.4e-37 159.1 229 47.2
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 4.2e-37 158.3 214 50.0
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 8.7e-35 150.6 91 85.7
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 3.3e-34 148.7 219 42.9
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 9.6e-34 147.1 225 43.6
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 3.7e-33 145.2 219 42.5
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 3.7e-33 145.2 160 51.9
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 4.8e-33 144.8 203 46.3
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 4.8e-33 144.8 225 42.7
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 6.2e-33 144.4 225 43.1
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 1.4e-32 143.3 225 41.3
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 1.4e-32 143.3 225 41.8
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 1.8e-32 142.9 225 42.2
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 1.8e-32 142.9 225 42.2
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 3.1e-32 142.1 225 42.2
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 3.1e-32 142.1 225 43.1
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 3.1e-32 142.1 224 42.9
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 4.0e-32 141.7 225 42.7
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 4.0e-32 141.7 225 42.7
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 5.3e-32 141.4 225 41.8
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 5.3e-32 141.4 225 40.4
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 5.3e-32 141.4 225 41.3
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 6.9e-32 141.0 223 42.6
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 9.0e-32 140.6 225 41.8
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 1.2e-31 140.2 225 40.9
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.5e-31 139.8 225 42.2
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 2.0e-31 139.4 225 40.4
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 2.0e-31 139.4 225 40.4
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 2.0e-31 139.4 225 41.3
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 2.6e-31 139.0 225 40.9
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 2.6e-31 139.0 225 41.8
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 2.6e-31 139.0 225 42.2
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 2.6e-31 139.0 225 41.3
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 3.4e-31 138.7 225 40.4
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 4.5e-31 138.3 225 40.0
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 4.5e-31 138.3 225 40.0
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 4.5e-31 138.3 225 42.2
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 4.5e-31 138.3 231 41.6
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 4.5e-31 138.3 225 40.9
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 4.5e-31 138.3 225 41.8
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 5.8e-31 137.9 223 41.3
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 5.8e-31 137.9 225 40.9
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 7.6e-31 137.5 225 39.6
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 7.6e-31 137.5 225 40.9
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.3e-30 136.7 226 40.7
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 1.3e-30 136.7 225 40.4
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.7e-30 136.3 225 41.3
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 2.2e-30 136.0 225 40.9
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 2.2e-30 136.0 225 41.3
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 2.9e-30 135.6 225 40.0
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 2.9e-30 135.6 225 40.4
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 3.8e-30 135.2 225 41.3
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 3.8e-30 135.2 225 40.4
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 3.8e-30 135.2 227 41.0
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 3.8e-30 135.2 225 39.6
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 6.5e-30 134.4 92 73.9
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 6.5e-30 134.4 91 74.7
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 6.5e-30 134.4 91 74.7
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 8.4e-30 134.0 224 42.4
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 1.9e-29 132.9 91 73.6
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 1.9e-29 132.9 91 73.6
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 1.9e-29 132.9 91 73.6
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 2.5e-29 132.5 225 39.6
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 2.5e-29 132.5 225 40.0
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 2.5e-29 132.5 91 73.6
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 3.2e-29 132.1 91 73.6
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 4.2e-29 131.7 91 71.4
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 4.2e-29 131.7 223 39.9
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 4.2e-29 131.7 91 73.6
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 4.2e-29 131.7 229 40.6
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 7.1e-29 131.0 227 39.6
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 9.3e-29 130.6 233 39.5
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 1.2e-28 130.2 91 74.7
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 1.2e-28 130.2 218 41.3
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.1e-28 129.4 223 39.5
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 2.7e-28 129.0 224 39.3
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 2.7e-28 129.0 91 70.3
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 6.0e-28 127.9 224 38.4
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 6.0e-28 127.9 227 40.1
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.0e-27 127.1 227 38.8
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 1.0e-27 127.1 90 73.3
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.8e-27 126.3 91 68.1
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 1.8e-27 126.3 91 72.5
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 2.3e-27 125.9 224 38.4
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 3.9e-27 125.2 91 70.3
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 6.7e-27 124.4 91 70.3
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 2.5e-26 122.5 225 37.3
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 7.4e-26 120.9 91 65.9
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 2.2e-25 119.4 73 84.9
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 4.8e-25 118.2 203 38.4
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 6.3e-25 117.9 225 37.3
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 1.4e-24 116.7 227 36.6
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 1.8e-24 116.3 225 36.0
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-24 116.3 227 35.7
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-24 116.3 225 36.0
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 6.9e-24 114.4 225 35.6
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 6.9e-24 114.4 225 37.8
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 2.0e-23 112.8 73 83.6
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 2.0e-23 112.8 225 35.6
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 2.6e-23 112.5 91 61.5
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 2.6e-23 112.5 201 38.8
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 7.6e-23 110.9 201 37.8
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 7.6e-23 110.9 199 39.2
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 1.3e-22 110.2 91 60.4
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 3.8e-22 108.6 227 33.9
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 6.5e-22 107.8 227 33.9
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.1e-21 107.1 91 58.2
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 1.9e-21 106.3 227 33.9
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 3.2e-21 105.5 227 33.9
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.5e-21 104.8 197 37.6
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 9.4e-21 104.0 224 32.1
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 4.6e-20 101.7 83 66.3
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 1.4e-19 100.1 91 58.2
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 3.9e-19 98.6 65 75.4
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 5.1e-19 98.2 67 71.6
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 6.7e-19 97.8 91 54.9
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 8.8e-19 97.4 91 57.1
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 8.8e-19 97.4 93 57.0
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.1e-18 97.1 91 56.0
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 3.3e-18 95.5 89 64.0
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 3.7e-17 92.0 227 32.2
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 4.8e-17 91.7 94 53.2
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 1.4e-16 90.1 91 56.0
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 9.1e-16 87.4 91 57.1
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.0e-15 86.3 106 49.1
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 3.4e-15 85.5 172 37.8
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 3.8e-14 82.0 90 53.3
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.1e-13 80.5 104 48.1
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.5e-13 78.2 111 44.1
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 2.1e-12 76.3 62 59.7
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 3.3e-10 68.9 57 57.9
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 4.8e-09 65.1 167 33.5
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 2.4e-08 62.8 158 32.3
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 7.7e-07 57.8 33 81.8
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 1.3e-06 57.0 32 87.5
Glyma.01G101050 Glycine max HOM05D003159 ORTHO05D003780 3.8e-06 55.5 35 77.1
arahy.Tifrunner.gnm1.ann1.I3FRE1 Arachis hypogaea HOM05D003159 ORTHO05D003780 6.5e-06 54.7 31 87.1


User provided reference genes

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