Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1825.1 927 100.0
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 0.0e+00 1572.4 945 85.5
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 0.0e+00 1548.5 940 84.9
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 0.0e+00 1546.9 945 84.0
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 0.0e+00 1535.0 940 83.9
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 0.0e+00 1526.1 946 83.4
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 0.0e+00 1522.7 940 83.4
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1505.3 928 83.2
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 0.0e+00 1497.6 949 81.8
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1495.3 939 82.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 0.0e+00 1485.3 958 81.2
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1362.1 929 77.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 0.0e+00 1344.3 946 75.2
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1293.5 967 72.5
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1193.3 950 69.3
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 0.0e+00 1191.8 950 67.4
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 5.9e-268 927.9 939 55.1
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.3e-262 910.2 972 52.9
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.9e-262 909.1 562 82.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 6.4e-262 907.9 952 53.2
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.6e-260 903.3 980 52.3
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 9.5e-258 894.0 951 52.8
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.5e-255 886.7 956 52.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 2.0e-255 886.3 985 52.8
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 3.7e-254 882.1 962 51.9
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 4.9e-254 881.7 986 51.4
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 7.0e-253 877.9 940 52.1
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 3.9e-251 872.1 964 51.7
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 5.0e-251 871.7 962 51.7
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.7e-249 865.1 964 51.3
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 7.5e-247 857.8 935 52.3
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 4.9e-246 855.1 955 50.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 2.4e-245 852.8 963 50.8
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.2e-245 852.4 970 50.7
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 7.1e-245 851.3 961 51.1
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.0e-243 847.4 951 52.1
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.0e-243 847.4 959 49.7
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 1.7e-243 846.7 932 51.5
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.7e-243 846.7 963 51.1
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 6.6e-243 844.7 960 49.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 8.6e-243 844.3 951 49.9
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.1e-241 839.7 965 51.2
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 2.1e-241 839.7 942 50.5
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 6.8e-240 834.7 938 49.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.8e-240 834.7 965 50.9
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 6.8e-240 834.7 951 49.6
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.5e-239 833.6 956 50.8
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.5e-239 833.6 940 49.6
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 2.6e-239 832.8 951 49.9
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.3e-238 830.5 925 50.5
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.3e-238 830.5 943 50.7
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 6.4e-238 828.2 929 50.3
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 8.4e-238 827.8 934 49.6
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.1e-237 827.4 935 51.2
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 5.4e-237 825.1 940 49.9
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 2.1e-236 823.2 935 48.9
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 7.8e-236 821.2 942 49.5
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.0e-235 820.8 962 48.9
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.0e-235 820.8 962 49.4
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.7e-235 820.1 936 48.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.7e-235 820.1 964 49.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 3.0e-235 819.3 993 50.6
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 5.1e-235 818.5 949 49.5
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 5.1e-235 818.5 876 51.9
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.1e-234 817.4 962 50.3
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 9.6e-234 814.3 961 48.7
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 6.2e-233 811.6 939 49.6
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.1e-232 810.8 792 54.7
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 3.1e-232 809.3 935 50.9
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 3.4e-231 805.8 894 51.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.9e-230 802.0 905 50.7
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.9e-230 802.0 996 48.1
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 4.2e-229 798.9 949 49.7
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.4e-229 798.5 974 49.3
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 2.1e-228 796.6 961 47.8
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 3.5e-228 795.8 973 48.6
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 6.0e-228 795.0 960 47.8
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 6.0e-228 795.0 944 48.5
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 6.0e-228 795.0 952 48.8
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.3e-227 793.9 974 49.0
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 6.6e-227 791.6 964 48.5
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.3e-226 788.9 978 49.1
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 4.3e-226 788.9 893 50.3
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 5.3e-224 781.9 963 48.0
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 5.3e-224 781.9 963 48.0
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.2e-223 780.8 658 60.6
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 3.4e-223 779.2 957 47.0
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.2e-222 776.5 931 48.8
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.6e-220 770.4 671 59.6
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 7.9e-220 768.1 936 47.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.7e-219 766.9 911 49.3
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 8.7e-219 764.6 659 59.9
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 5.6e-218 761.9 899 48.8
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 7.4e-218 761.5 951 47.5
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.0e-211 741.1 995 44.0
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.3e-211 740.7 817 51.5
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.0e-211 739.6 936 47.0
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.4e-208 730.7 706 55.4
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.9e-206 722.2 933 46.0
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 4.6e-204 715.7 807 50.4
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.5e-202 709.9 954 44.8
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.8e-200 703.7 975 44.4
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.2e-191 674.5 796 49.1
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.8e-190 669.5 826 47.2
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.9e-189 667.2 952 42.6
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 4.6e-188 662.5 613 56.9
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 4.1e-184 649.4 960 42.0
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.2e-183 647.9 675 50.8
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 8.8e-179 631.7 923 43.4
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.7e-161 574.3 683 46.4
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.0e-158 565.1 719 45.1
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-156 558.1 723 46.5
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 2.3e-155 553.9 437 62.7
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 5.2e-155 552.7 437 63.4
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 9.2e-152 542.0 623 46.4
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.9e-149 534.3 613 47.8
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 3.7e-145 520.0 441 64.9
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 4.9e-145 519.6 696 44.0
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 9.5e-141 505.4 922 38.0
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 6.6e-134 482.6 706 42.4
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 8.1e-132 475.7 320 82.5
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.3e-131 474.2 684 43.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.7e-118 431.4 252 88.1
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.3e-113 415.2 657 39.4
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.6e-108 398.3 725 37.8
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 3.8e-105 387.1 725 34.5
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 7.9e-103 379.4 475 44.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 4.5e-98 363.6 286 63.6
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 8.7e-94 349.4 519 44.9
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 2.4e-83 314.7 281 65.1
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.6e-79 302.0 543 40.1
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 8.8e-78 296.2 262 58.4
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.0e-66 258.5 195 64.6
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.2e-64 251.1 243 55.1
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 5.2e-62 243.8 236 55.1
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 4.4e-61 240.7 197 63.5
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.8e-54 216.5 177 63.3
C04p07680 Brassica napus HOM05D004501 ORTHO05D023925 2.7e-42 178.3 117 82.9
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 4.2e-40 171.0 132 62.9
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.2e-40 170.2 131 64.1
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.8e-39 168.3 151 58.3
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 6.1e-39 167.2 312 37.2
BraA05t19626Z Brassica rapa HOM05D004501 ORTHO05D023925 1.7e-36 159.1 117 77.8
A05p06580 Brassica napus HOM05D004501 ORTHO05D023925 2.2e-36 158.7 117 77.8
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 4.9e-36 157.5 177 46.9
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 5.6e-32 144.1 657 25.3
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 7.3e-32 143.7 116 57.8
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.2e-21 109.8 191 37.7
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.9e-17 94.7 80 55.0
BcaB02g09086 Brassica carinata HOM05D004501 ORTHO05D023925 5.8e-13 80.9 52 80.8
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.2e-11 73.6 42 83.3
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 9.2e-11 73.6 300 31.0
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 3.5e-10 71.6 61 55.7
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 3.1e-06 58.5 41 58.5


User provided reference genes

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