Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.5e-83 312.8 152 100.0
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 2.0e-80 302.4 152 96.7
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 3.4e-80 301.6 153 96.7
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 3.4e-80 301.6 153 96.7
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.9e-78 295.8 154 96.1
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 4.2e-78 294.7 152 93.4
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 3.0e-76 288.5 152 90.8
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.9e-75 285.8 152 91.4
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 7.4e-75 283.9 156 92.3
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.4e-73 279.6 152 88.2
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 4.9e-71 271.2 153 86.3
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 5.1e-68 261.2 153 85.6
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.7e-61 238.8 149 77.2
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.3e-60 235.7 149 77.9
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.0e-60 235.3 149 77.9
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.0e-60 235.3 149 77.9
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 1.1e-59 233.4 149 76.5
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 2.5e-59 232.3 149 75.2
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.0e-56 222.6 153 73.9
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.0e-56 222.6 159 71.7
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 3.4e-56 221.9 155 74.2
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 4.5e-56 221.5 150 72.7
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 2.9e-55 218.8 148 72.3
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 2.9e-55 218.8 121 87.6
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.9e-55 218.8 128 79.7
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 5.0e-55 218.0 120 86.7
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 6.5e-55 217.6 153 71.9
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 6.5e-55 217.6 148 73.6
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 8.5e-55 217.2 155 69.7
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.1e-54 216.9 151 72.2
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.1e-54 216.9 150 74.7
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.4e-54 216.5 105 99.0
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.9e-54 216.1 146 74.7
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.9e-54 216.1 153 71.9
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.2e-54 215.3 153 70.6
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 3.2e-54 215.3 135 77.8
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.2e-54 215.3 156 71.8
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.2e-54 215.3 156 71.8
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.2e-54 214.9 156 71.2
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 5.5e-54 214.5 156 71.8
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 7.2e-54 214.2 139 74.8
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 7.2e-54 214.2 151 71.5
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 7.2e-54 214.2 145 75.2
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 9.4e-54 213.8 156 71.8
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.2e-53 213.4 125 80.0
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.2e-53 213.4 152 70.4
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.1e-53 212.6 149 71.8
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.1e-53 212.6 152 71.7
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 2.1e-53 212.6 140 74.3
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.6e-53 211.8 146 72.6
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 3.6e-53 211.8 144 73.6
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 6.1e-53 211.1 145 74.5
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.4e-52 209.9 152 68.4
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.8e-52 209.5 159 71.1
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.8e-52 209.5 153 68.6
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 6.7e-52 207.6 151 70.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 6.7e-52 207.6 156 69.9
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 8.8e-52 207.2 139 71.9
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 8.8e-52 207.2 143 71.3
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.1e-51 206.8 149 68.5
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 3.3e-51 205.3 144 71.5
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 9.7e-51 203.8 135 74.1
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 9.7e-51 203.8 143 73.4
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.3e-50 203.4 155 69.0
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.2e-50 202.6 152 66.4
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 2.2e-50 202.6 152 69.1
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.8e-50 202.2 135 73.3
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 2.8e-50 202.2 152 70.4
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 3.7e-50 201.8 129 75.2
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 3.7e-50 201.8 151 67.5
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 4.8e-50 201.4 151 68.2
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 4.8e-50 201.4 151 68.2
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 6.3e-50 201.1 145 70.3
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 6.3e-50 201.1 152 71.1
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.1e-49 200.3 135 73.3
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.1e-49 200.3 151 68.2
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.1e-49 200.3 119 79.0
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.8e-49 199.5 146 68.5
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.4e-49 199.1 151 67.5
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.4e-49 199.1 148 67.6
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 3.1e-49 198.7 154 66.9
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 4.1e-49 198.4 154 66.9
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 4.1e-49 198.4 160 65.0
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 9.1e-49 197.2 158 67.1
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.2e-48 196.8 122 74.6
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.2e-48 196.8 148 68.9
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.5e-48 196.4 159 62.9
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.0e-48 196.1 125 74.4
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 3.4e-48 195.3 166 61.4
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 3.4e-48 195.3 165 61.8
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.9e-48 194.5 131 72.5
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 7.7e-48 194.1 149 66.4
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.0e-47 193.7 144 68.8
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.3e-47 193.4 126 73.0
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.2e-47 192.6 139 68.3
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 2.9e-47 192.2 116 81.9
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 3.8e-47 191.8 125 73.6
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.0e-47 191.4 145 66.9
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 5.0e-47 191.4 146 65.8
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.0e-47 191.4 146 66.4
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 6.5e-47 191.0 119 75.6
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.1e-46 190.3 150 63.3
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.4e-46 189.9 123 72.4
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.4e-46 189.9 142 64.8
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.5e-46 189.1 149 64.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 3.2e-46 188.7 164 60.4
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.2e-46 188.7 147 67.3
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.2e-46 188.3 152 64.5
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 5.5e-46 188.0 137 67.9
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 7.2e-46 187.6 159 62.3
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 7.2e-46 187.6 116 76.7
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 2.1e-45 186.0 120 74.2
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.1e-45 186.0 156 65.4
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 2.1e-45 186.0 118 74.6
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.7e-45 185.7 119 71.4
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.4e-44 183.3 156 64.7
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.8e-44 183.0 114 76.3
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.8e-44 183.0 139 66.9
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 8.8e-44 180.6 153 62.7
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 8.8e-44 180.6 153 62.7
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.1e-43 180.3 155 60.6
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.6e-43 179.1 141 67.4
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 5.7e-43 177.9 211 51.2
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 9.7e-43 177.2 139 65.5
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 9.7e-43 177.2 116 71.6
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.4e-41 173.3 120 69.2
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.1e-41 170.6 140 64.3
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 5.9e-40 167.9 128 68.0
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 7.7e-40 167.5 102 77.5
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 7.7e-40 167.5 102 77.5
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.0e-39 167.2 182 54.4
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.9e-38 162.9 139 61.9
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.5e-38 162.5 135 63.0
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 3.2e-38 162.2 145 59.3
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 5.5e-38 161.4 164 53.7
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-37 160.2 135 62.2
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-37 160.2 135 62.2
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.7e-37 159.1 188 48.4
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 6.1e-37 157.9 153 54.2
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 8.8e-36 154.1 131 58.8
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 1.5e-35 153.3 100 73.0
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 4.8e-34 148.3 141 56.7
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 4.8e-34 148.3 130 60.8
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.1e-33 147.1 101 71.3
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 3.5e-32 142.1 126 61.9
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.3e-31 140.2 77 89.6
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.7e-31 139.8 95 69.5
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.1e-30 137.1 77 88.3
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 3.2e-30 135.6 77 87.0
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 5.5e-30 134.8 106 64.2
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 6.8e-28 127.9 134 50.0
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 4.5e-24 115.2 73 76.7
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.3e-23 113.6 120 46.7
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 8.5e-23 110.9 77 71.4
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 4.7e-21 105.1 58 82.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 8.8e-20 100.9 59 74.6
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.2e-19 100.5 124 52.4
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.2e-19 100.5 102 60.8
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.0e-19 99.8 74 67.6
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 7.5e-19 97.8 60 76.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 3.7e-18 95.5 64 71.9
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 7.3e-14 81.3 146 39.7
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.2e-11 73.9 150 33.3
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 5.7e-11 71.6 39 82.1
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.7e-10 70.1 133 31.6


User provided reference genes

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