Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08681 Brassica carinata HOM05D003169 ORTHO05D003700 3.0e-128 461.8 232 100.0
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 2.1e-73 279.6 227 70.9
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 1.8e-72 276.6 232 69.8
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 1.8e-72 276.6 232 69.8
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 1.8e-72 276.6 222 71.6
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 2.3e-72 276.2 232 69.8
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 2.3e-72 276.2 232 69.8
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 1.2e-71 273.9 222 70.3
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 1.7e-70 270.0 236 66.9
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 1.9e-69 266.5 257 63.0
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 9.2e-69 264.2 234 67.1
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 1.3e-67 260.4 259 60.6
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 7.3e-66 254.6 218 67.0
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 2.4e-64 249.6 220 64.1
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 3.1e-64 249.2 220 64.1
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 6.8e-64 248.1 218 62.8
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 8.9e-64 247.7 220 63.6
Cpa.g.sc32.147 Carica papaya HOM05D003169 ORTHO05D003700 1.2e-63 247.3 218 64.2
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 1.5e-63 246.9 220 64.1
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 2.6e-63 246.1 220 63.2
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 3.4e-63 245.7 220 62.3
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 3.4e-63 245.7 220 61.4
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 5.8e-63 245.0 220 62.7
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 5.8e-63 245.0 220 62.7
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 7.6e-63 244.6 220 62.3
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 7.6e-63 244.6 220 61.8
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 1.3e-62 243.8 220 62.7
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 1.7e-62 243.4 220 61.8
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 2.9e-62 242.7 220 62.7
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 2.9e-62 242.7 218 62.8
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 3.8e-62 242.3 220 60.5
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 4.9e-62 241.9 218 61.5
Cfa017765 Carpinus fangiana HOM05D003169 ORTHO05D003700 6.4e-62 241.5 224 59.8
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 6.4e-62 241.5 220 61.8
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 8.4e-62 241.1 218 61.5
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 8.4e-62 241.1 220 60.9
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 1.4e-61 240.4 218 61.0
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 1.4e-61 240.4 218 61.9
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 1.4e-61 240.4 218 61.9
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 1.4e-61 240.4 218 61.9
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 1.9e-61 240.0 220 59.5
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.9e-61 240.0 220 61.4
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 2.4e-61 239.6 220 61.8
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 3.2e-61 239.2 220 60.9
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 3.2e-61 239.2 220 60.9
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 4.1e-61 238.8 220 63.6
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 5.4e-61 238.4 220 60.9
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 9.2e-61 237.7 220 61.8
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 9.2e-61 237.7 218 60.6
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 1.2e-60 237.3 220 61.4
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 2.1e-60 236.5 220 60.9
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 3.5e-60 235.7 220 59.5
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 3.5e-60 235.7 220 60.0
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 3.5e-60 235.7 220 59.5
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 6.0e-60 235.0 220 60.5
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 1.3e-59 233.8 218 61.5
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 1.3e-59 233.8 220 59.1
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 1.7e-59 233.4 220 58.2
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 2.3e-59 233.0 221 58.8
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 5.1e-59 231.9 218 57.8
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 8.7e-59 231.1 220 61.4
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 1.5e-58 230.3 220 60.0
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 2.5e-58 229.6 219 59.4
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 3.3e-58 229.2 220 60.0
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 3.3e-58 229.2 220 57.7
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 4.3e-58 228.8 220 58.6
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 4.3e-58 228.8 220 60.9
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 5.6e-58 228.4 220 57.7
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 7.3e-58 228.0 220 58.6
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 1.6e-57 226.9 218 60.6
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 1.6e-57 226.9 218 60.6
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 2.8e-57 226.1 218 59.6
AUR62041054 Chenopodium quinoa HOM05D003169 ORTHO05D003700 4.7e-57 225.3 218 58.3
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 4.7e-57 225.3 220 57.7
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 6.2e-57 224.9 186 65.1
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 6.2e-57 224.9 219 58.0
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 8.1e-57 224.6 220 59.5
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.4e-56 223.8 218 59.2
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 1.8e-56 223.4 218 58.7
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.8e-56 223.4 218 58.7
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 2.4e-56 223.0 220 56.8
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 2.4e-56 223.0 213 59.2
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 5.2e-56 221.9 220 56.4
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 9.0e-56 221.1 220 58.6
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 1.2e-55 220.7 220 55.0
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 2.0e-55 219.9 228 56.1
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 2.0e-55 219.9 181 65.2
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 2.6e-55 219.5 218 58.3
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 5.8e-55 218.4 218 58.7
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 7.6e-55 218.0 218 58.7
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 9.9e-55 217.6 220 57.7
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 3.8e-54 215.7 218 58.7
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 8.4e-54 214.5 220 56.4
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 1.1e-53 214.2 220 55.9
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 5.4e-53 211.8 195 60.0
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 1.2e-52 210.7 218 56.9
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 1.6e-52 210.3 257 50.2
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 7.8e-52 208.0 218 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 3.9e-51 205.7 218 55.0
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 3.3e-50 202.6 218 52.8
Ca_22977_v3 Cicer arietinum L. HOM05D003169 ORTHO05D003700 4.3e-50 202.2 220 52.7
HanXRQChr16g0505691 Helianthus annuus HOM05D003169 ORTHO05D003700 4.3e-50 202.2 219 54.8
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 5.6e-50 201.8 193 57.5
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 4.8e-49 198.7 218 54.6
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 6.2e-49 198.4 219 54.8
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 6.2e-49 198.4 219 54.8
SMO358G0497 Selaginella moellendorffii HOM05D003169 ORTHO05D003700 3.1e-48 196.1 218 52.3
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 6.9e-48 194.9 218 53.7
Nitab4.5_0003291g0040 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.5e-47 193.7 171 63.7
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 2.6e-47 193.0 218 51.4
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 3.4e-47 192.6 218 50.9
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 5.8e-47 191.8 220 52.3
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 9.9e-47 191.0 223 53.4
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 7.1e-45 184.9 220 50.5
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 9.3e-45 184.5 181 57.5
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 1.6e-44 183.7 218 53.2
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 2.7e-44 183.0 218 50.0
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 3.5e-44 182.6 218 49.5
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 1.0e-43 181.0 179 57.0
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 8.7e-43 177.9 197 57.4
Thhalv10000653m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 1.1e-42 177.6 204 55.9
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 2.4e-40 169.9 218 47.7
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 3.1e-40 169.5 176 54.0
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 1.2e-39 167.5 210 47.6
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 2.0e-39 166.8 236 43.6
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 5.8e-39 165.2 183 52.5
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 1.1e-37 161.0 195 48.2
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 5.1e-35 152.1 213 45.5
Peaxi162Scf00166g00077 Petunia axillaris HOM05D003169 ORTHO05D003700 1.3e-30 137.5 98 69.4
Aqoxy1G03228 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 1.5e-26 124.0 195 43.1
TPR.G14822 Trifolium pratense HOM05D003169 ORTHO05D003700 3.1e-24 116.3 173 42.2
MBI18_g40795_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 7.6e-23 111.7 149 47.7
SEGI_14617 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 5.5e-21 105.5 135 50.4
Oeu032680.1 Olea europaea HOM05D003169 ORTHO05D003700 6.1e-20 102.1 62 79.0
Rhsim06G0106300 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.8e-19 100.5 62 75.8
SEGI_09386 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.9e-18 97.1 62 71.0
TPR.G20402 Trifolium pratense HOM05D003169 ORTHO05D003700 7.4e-18 95.1 61 80.3
MCO16G570 Micromonas commoda HOM05D003169 ORTHO05D003700 8.2e-17 91.7 217 33.2
SEGI_25392 Sequoiadendron giganteum HOM05D003169 ORTHO05D003700 1.1e-16 91.3 75 57.3
TPR.G39754 Trifolium pratense HOM05D003169 ORTHO05D003700 2.9e-14 83.2 61 65.6
Haze_26591 Corylus avellana HOM05D003169 ORTHO05D003700 5.0e-14 82.4 204 31.9
TPR.G7301 Trifolium pratense HOM05D003169 ORTHO05D003700 1.2e-12 77.8 55 63.6
MCO01G648 Micromonas commoda HOM05D003169 ORTHO05D003700 1.0e-11 74.7 216 31.9
PRCOL_00005992 Prasinoderma coloniale HOM05D003169 ORTHO05D003700 1.0e-11 74.7 233 27.9
Cre01.g053250 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 2.3e-11 73.6 230 29.6
TPR.G19390 Trifolium pratense HOM05D003169 ORTHO05D003700 4.4e-10 69.3 54 61.1
Cre02.g095045 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.3e-09 67.8 230 29.6
CARHR073010 Cardamine hirsuta HOM05D003169 ORTHO05D003700 1.5e-07 60.8 65 56.9
Cre07.g350100 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 7.7e-07 58.5 239 26.8
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 6.5e-06 55.5 61 47.5


User provided reference genes

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