Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 4.6e-71 271.2 141 100.0
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 5.1e-70 267.7 141 97.9
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 5.1e-70 267.7 141 97.9
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 5.1e-70 267.7 141 97.9
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 6.6e-70 267.3 141 97.9
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 6.6e-70 267.3 141 97.9
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 3.3e-69 265.0 142 98.6
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 5.6e-69 264.2 142 97.9
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 5.6e-69 264.2 142 97.9
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.6e-68 262.7 142 97.2
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.6e-68 262.7 142 97.9
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-67 260.0 142 97.2
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.1e-67 260.0 142 97.2
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 2.4e-67 258.8 142 95.1
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 5.2e-67 257.7 141 94.3
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 6.9e-67 257.3 141 94.3
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 8.9e-67 256.9 141 93.6
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 1.2e-66 256.5 142 94.4
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 95.0
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 95.0
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 95.0
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 95.0
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 4.4e-66 254.6 141 95.0
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 3.2e-64 248.4 142 91.5
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 4.6e-63 244.6 133 94.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.2e-55 219.9 141 82.3
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.6e-55 219.5 141 80.9
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.6e-55 219.5 141 80.9
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.1e-55 219.2 141 80.1
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.3e-54 216.5 139 79.9
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.3e-54 216.5 139 79.9
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 2.3e-54 215.7 141 77.3
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 77.3
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.7e-54 214.2 139 77.0
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.1e-53 213.4 141 76.6
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.1e-53 213.4 142 75.4
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 5.6e-53 211.1 142 78.2
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 78.0
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 5.6e-53 211.1 139 77.7
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.3e-52 209.9 141 79.4
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.3e-52 209.9 142 74.6
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 79.4
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.1e-52 209.1 142 77.5
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 76.6
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 75.9
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 76.6
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 4.8e-52 208.0 141 78.7
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 4.8e-52 208.0 141 78.0
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 78.0
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 8.1e-52 207.2 136 78.7
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.1e-51 206.8 141 78.7
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 78.0
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 77.3
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 74.5
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.4e-51 205.7 141 73.8
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.4e-51 205.7 142 75.4
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.1e-51 205.3 142 75.4
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 3.1e-51 205.3 139 74.1
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 4.0e-51 204.9 139 74.8
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 5.3e-51 204.5 141 76.6
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 9.0e-51 203.8 141 76.6
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.2e-50 203.4 141 74.5
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 75.9
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.5e-50 203.0 141 75.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.0e-50 202.6 139 74.1
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 3.4e-50 201.8 139 76.3
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 4.5e-50 201.4 139 71.2
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 9.9e-50 200.3 141 73.8
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 9.9e-50 200.3 139 74.1
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 9.9e-50 200.3 141 72.3
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 9.9e-50 200.3 141 75.9
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 73.6
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 75.9
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 2.2e-49 199.1 143 74.1
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 2.2e-49 199.1 141 75.2
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.2e-49 199.1 138 73.2
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.2e-49 199.1 141 72.3
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 74.5
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.8e-49 198.4 141 75.9
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.9e-49 198.0 141 70.9
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 4.9e-49 198.0 135 74.1
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 8.4e-49 197.2 141 74.5
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 8.4e-49 197.2 141 73.8
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 71.2
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.1e-48 196.8 141 73.8
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 72.3
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 73.0
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 5.5e-48 194.5 145 73.8
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.5e-48 194.5 143 74.1
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 7.1e-48 194.1 142 73.2
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.1e-48 194.1 140 72.9
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 9.3e-48 193.7 141 70.9
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 9.3e-48 193.7 141 75.2
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 9.3e-48 193.7 141 71.6
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.6e-47 193.0 140 72.9
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.6e-47 193.0 141 71.6
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.0e-47 191.0 142 73.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 6.0e-47 191.0 141 73.0
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 7.9e-47 190.7 141 71.6
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 2.3e-46 189.1 141 70.9
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 2.3e-46 189.1 141 73.8
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.0e-46 188.7 144 70.1
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 8.7e-46 187.2 139 72.7
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.1e-45 186.8 139 71.9
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-45 186.4 139 71.2
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-45 186.4 139 71.2
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.9e-45 186.0 157 70.1
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.9e-45 186.0 139 71.2
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 2.5e-45 185.7 143 70.6
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 2.5e-45 185.7 137 73.7
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 3.3e-45 185.3 141 72.3
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 4.3e-45 184.9 142 68.3
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 5.6e-45 184.5 138 71.0
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 9.6e-45 183.7 144 67.4
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.6e-44 183.0 139 69.8
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.6e-44 183.0 141 70.9
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.1e-44 182.6 142 68.3
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 2.1e-44 182.6 142 71.8
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.8e-44 182.2 143 71.3
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 4.8e-44 181.4 135 71.1
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 6.2e-44 181.0 139 70.5
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 6.9e-43 177.6 140 67.1
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 1.5e-42 176.4 143 66.4
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 1.5e-42 176.4 143 66.4
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 4.5e-42 174.9 142 68.3
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 4.5e-42 174.9 139 66.2
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 7.6e-42 174.1 139 66.9
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 6.5e-41 171.0 141 67.4
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 8.4e-41 170.6 141 67.4
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 3.2e-40 168.7 142 68.3
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 1.2e-39 166.8 141 63.8
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.6e-39 166.4 142 66.2
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.8e-38 162.9 137 63.5
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.3e-38 162.5 139 62.6
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.1e-37 160.2 139 64.0
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 5.7e-37 157.9 111 71.2
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 7.4e-37 157.5 155 60.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.8e-36 155.6 159 58.5
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.1e-35 153.7 142 61.3
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.4e-35 152.5 140 61.4
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 6.9e-35 151.0 91 82.4
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.0e-33 144.8 140 57.9
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 6.5e-33 144.4 88 79.5
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.5e-32 142.5 114 67.5
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 3.2e-32 142.1 119 58.0
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.1e-31 139.4 145 54.5
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 1.8e-30 136.3 120 57.5
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 8.7e-30 134.0 91 80.2
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.3e-29 132.1 141 54.6
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 7.4e-29 131.0 145 55.9
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.3e-28 130.2 119 58.0
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.2e-28 129.4 141 52.5
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.3e-28 127.9 142 53.5
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 8.2e-28 127.5 118 56.8
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.9e-27 124.4 142 50.0
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 9.1e-27 124.0 91 70.3
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.4e-26 122.1 139 52.5
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.3e-22 109.4 88 58.0
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 8.8e-22 107.5 91 63.7
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 5.3e-19 98.2 67 67.2
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 2.0e-18 96.3 141 46.1
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 7.7e-18 94.4 53 83.0
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 2.2e-17 92.8 135 44.4
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 3.6e-15 85.5 81 60.5
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 8.2e-12 74.3 87 56.3
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 4.7e-07 58.5 135 36.3


User provided reference genes

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