Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 7.3e-101 370.5 186 100.0
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 9.6e-85 317.0 190 88.4
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 2.1e-84 315.8 191 88.0
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 2.8e-84 315.5 190 87.9
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 2.8e-84 315.5 190 87.9
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 2.8e-84 315.5 191 88.0
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 3.5e-79 298.5 195 84.6
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 1.9e-72 276.2 196 76.0
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 1.2e-71 273.5 197 77.7
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 2.1e-71 272.7 196 75.5
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 2.1e-71 272.7 198 77.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.1e-64 250.4 202 71.8
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 7.9e-63 244.2 189 69.3
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 4.4e-53 211.8 125 83.2
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 4.4e-53 211.8 203 57.6
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 5.7e-53 211.5 132 78.0
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 5.7e-53 211.5 132 78.0
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 5.7e-53 211.5 122 85.2
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 2.2e-52 209.5 120 83.3
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.2e-52 209.5 111 87.4
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 4.8e-52 208.4 111 86.5
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 6.3e-52 208.0 182 62.6
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 6.3e-52 208.0 193 62.2
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 8.2e-52 207.6 111 86.5
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 8.2e-52 207.6 197 59.4
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.1e-51 207.2 189 61.9
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.1e-51 207.2 132 76.5
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 1.1e-51 207.2 111 87.4
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.4e-51 206.8 124 81.5
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.4e-51 206.8 124 81.5
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 1.8e-51 206.5 120 83.3
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.4e-51 206.1 189 60.3
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 2.4e-51 206.1 119 82.4
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.1e-51 205.7 189 61.4
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 3.1e-51 205.7 187 61.0
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 5.3e-51 204.9 189 59.8
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 7.0e-51 204.5 145 71.0
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 7.0e-51 204.5 140 72.9
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.2e-50 203.8 118 82.2
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 1.2e-50 203.8 121 81.0
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 1.5e-50 203.4 171 63.2
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 1.5e-50 203.4 135 73.3
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.5e-50 203.4 184 62.0
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 2.0e-50 203.0 131 74.8
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 2.6e-50 202.6 177 62.1
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 2.6e-50 202.6 196 60.2
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 3.5e-50 202.2 147 70.1
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 3.5e-50 202.2 180 62.8
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 4.5e-50 201.8 119 79.8
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 4.5e-50 201.8 125 77.6
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 5.9e-50 201.4 181 58.6
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 1.0e-49 200.7 111 82.9
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.3e-49 200.3 147 68.7
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 2.2e-49 199.5 193 59.1
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 2.9e-49 199.1 147 68.7
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 5.0e-49 198.4 181 58.0
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 5.0e-49 198.4 190 59.5
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 6.5e-49 198.0 134 72.4
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 6.5e-49 198.0 129 75.2
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 8.5e-49 197.6 177 58.8
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.1e-48 197.2 155 65.8
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 1.9e-48 196.4 163 64.4
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 2.5e-48 196.1 154 66.9
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 4.2e-48 195.3 111 82.0
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 4.2e-48 195.3 165 63.0
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 4.2e-48 195.3 127 72.4
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 5.5e-48 194.9 159 64.8
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 7.2e-48 194.5 162 59.9
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 9.4e-48 194.1 180 57.8
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 9.4e-48 194.1 135 69.6
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 1.6e-47 193.4 179 59.2
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 1.6e-47 193.4 111 82.0
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.6e-47 193.4 111 82.0
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.6e-47 193.4 111 82.0
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 2.1e-47 193.0 122 75.4
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 4.7e-47 191.8 182 59.3
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 6.1e-47 191.4 111 80.2
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 8.0e-47 191.0 125 74.4
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 1.0e-46 190.7 202 55.0
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.0e-46 190.7 150 66.0
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.0e-46 190.7 111 77.5
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 1.4e-46 190.3 195 56.4
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.8e-46 189.9 111 79.3
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 1.8e-46 189.9 171 62.6
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 2.3e-46 189.5 106 81.1
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 2.3e-46 189.5 111 79.3
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 3.0e-46 189.1 191 56.0
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 8.8e-46 187.6 115 75.7
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.1e-45 187.2 171 61.4
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 3.3e-45 185.7 122 74.6
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 5.7e-45 184.9 111 74.8
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 7.4e-45 184.5 111 78.4
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 7.4e-45 184.5 130 74.6
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 7.4e-45 184.5 111 74.8
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 2.2e-44 183.0 197 53.3
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 2.2e-44 183.0 119 76.5
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 2.8e-44 182.6 124 69.4
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.1e-43 178.7 143 62.2
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 5.3e-43 178.3 111 72.1
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 7.0e-43 177.9 169 56.8
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.5e-42 175.6 142 59.2
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.5e-42 175.6 142 59.9
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 4.5e-42 175.3 191 51.8
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.3e-41 173.7 181 53.0
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.7e-41 173.3 95 81.1
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 6.5e-41 171.4 166 54.8
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 8.5e-41 171.0 93 82.8
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 5.5e-40 168.3 112 68.8
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 9.4e-40 167.5 140 58.6
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.2e-39 167.2 146 58.2
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.2e-39 167.2 124 65.3
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 3.6e-39 165.6 112 71.4
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.8e-38 163.3 108 65.7
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 2.3e-38 162.9 80 91.2
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 5.2e-38 161.8 153 54.9
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 5.2e-38 161.8 121 65.3
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 5.2e-38 161.8 108 68.5
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 4.8e-36 155.2 126 61.9
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 1.8e-35 153.3 105 71.4
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 3.1e-35 152.5 77 85.7
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 4.5e-34 148.7 107 64.5
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.2e-29 134.0 129 51.2
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.4e-27 127.1 147 45.6
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 3.3e-24 115.9 113 51.3
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 7.2e-24 114.8 75 70.7
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 7.5e-21 104.8 124 41.9
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.7e-12 75.9 80 48.8


User provided reference genes

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