Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 3.5e-89 331.6 172 100.0
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 1.4e-85 319.7 172 97.7
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 1.4e-85 319.7 172 97.7
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 1.4e-85 319.7 172 97.7
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.8e-85 319.3 172 97.7
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.8e-85 319.3 172 97.7
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 2.2e-83 312.4 172 94.8
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 8.3e-83 310.5 172 94.8
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 1.1e-82 310.1 172 92.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 1.4e-82 309.7 172 92.4
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.0e-81 305.8 172 92.4
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 2.7e-81 305.4 172 92.4
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 7.8e-81 303.9 174 92.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 7.8e-81 303.9 174 92.0
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 3.0e-80 302.0 174 91.4
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 5.0e-80 301.2 172 91.9
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 3.6e-78 295.0 172 89.5
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 7.3e-55 217.6 168 69.0
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.8e-53 213.0 178 64.6
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 6.9e-53 211.1 110 97.3
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 2.6e-52 209.1 170 65.9
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 3.4e-52 208.8 170 63.5
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.7e-51 206.5 166 63.9
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 2.2e-51 206.1 171 63.7
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 4.9e-51 204.9 172 62.8
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 4.9e-51 204.9 172 61.6
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.1e-50 203.8 172 61.6
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 3.2e-50 202.2 163 64.4
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 5.4e-50 201.4 171 62.6
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 5.4e-50 201.4 171 62.6
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 7.1e-50 201.1 168 62.5
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 7.1e-50 201.1 171 62.6
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 7.1e-50 201.1 163 64.4
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 7.1e-50 201.1 163 63.8
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.1e-49 199.5 168 61.9
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 6.0e-49 198.0 163 63.8
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 3.9e-48 195.3 164 61.6
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 6.7e-48 194.5 163 62.0
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 6.7e-48 194.5 171 59.1
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 6.7e-48 194.5 171 59.1
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 8.7e-48 194.1 166 62.0
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 8.7e-48 194.1 173 61.3
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.5e-47 193.4 162 63.0
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 4.3e-47 191.8 155 63.9
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 5.6e-47 191.4 163 62.0
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 5.6e-47 191.4 156 64.7
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 5.6e-47 191.4 156 64.7
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.6e-47 191.4 163 60.7
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 5.6e-47 191.4 163 60.7
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 7.4e-47 191.0 164 61.6
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 9.6e-47 190.7 167 58.7
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.3e-46 190.3 163 60.1
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.3e-46 190.3 163 58.9
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.3e-46 190.3 170 58.2
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.6e-46 189.9 167 59.3
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.1e-46 189.5 173 60.1
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.8e-46 189.1 163 60.7
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 4.8e-46 188.3 163 62.0
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 8.1e-46 187.6 163 59.5
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.4e-45 186.8 172 57.0
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 5.3e-45 184.9 155 61.9
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.9e-45 184.5 173 57.2
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 9.0e-45 184.1 173 56.1
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 2.0e-44 183.0 168 58.3
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 4.5e-44 181.8 140 67.1
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 4.5e-44 181.8 168 57.7
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 4.5e-44 181.8 184 54.3
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 7.6e-44 181.0 208 51.0
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.7e-43 179.9 163 58.9
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 2.2e-43 179.5 170 57.6
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 3.8e-43 178.7 166 55.4
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 4.9e-43 178.3 163 58.3
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-42 177.2 168 59.5
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.4e-42 176.8 168 56.0
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.4e-42 176.8 163 57.7
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 4.2e-42 175.3 163 57.1
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 4.2e-42 175.3 171 56.1
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 5.5e-42 174.9 172 55.2
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.2e-41 173.7 172 54.7
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.1e-41 172.9 167 54.5
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.7e-41 172.6 172 57.0
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 3.5e-41 172.2 163 56.4
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 4.6e-41 171.8 172 57.0
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 6.0e-41 171.4 173 54.9
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 2.3e-40 169.5 167 56.3
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 3.9e-40 168.7 170 55.3
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 5.1e-40 168.3 173 51.4
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.1e-39 167.2 173 54.3
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 1.9e-39 166.4 156 57.7
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 1.9e-39 166.4 160 55.0
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 3.7e-38 162.2 170 54.1
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 2.4e-37 159.5 147 59.9
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 4.0e-37 158.7 170 51.2
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.6e-36 156.0 153 56.9
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 1.1e-34 150.6 123 61.0
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.5e-34 149.4 174 47.1
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.6e-33 146.7 166 48.8
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.6e-33 146.7 125 62.4
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 6.0e-33 144.8 180 46.7
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 2.3e-32 142.9 113 62.8
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 5.1e-32 141.7 180 46.7
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 3.1e-29 132.5 123 56.1
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-25 119.0 166 42.2
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-22 109.4 183 41.0
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 6.3e-22 108.2 183 34.4
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 8.2e-22 107.8 179 38.5
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 4.1e-21 105.5 182 40.1
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 9.1e-21 104.4 148 41.2
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 2.6e-20 102.8 151 43.0
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-20 102.1 135 43.7
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 5.9e-20 101.7 176 38.6
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 8.5e-19 97.8 165 40.0
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-18 97.1 188 34.0
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-18 95.1 196 33.7
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 9.4e-18 94.4 114 50.0
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 3.6e-17 92.4 114 50.0
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 1.0e-16 90.9 72 66.7
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.4e-16 90.5 76 59.2
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.4e-16 90.5 141 37.6
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-16 90.1 175 37.1
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-16 90.1 176 40.3
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 1.8e-16 90.1 139 40.3
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-16 89.4 173 35.3
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.4e-15 84.7 165 32.7
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 9.7e-15 84.3 73 61.6
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 4.8e-14 82.0 71 62.0
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 8.2e-14 81.3 137 34.3
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-12 77.0 181 32.6
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 2.0e-12 76.6 177 32.8
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-12 76.6 179 27.4
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 4.5e-12 75.5 171 32.7
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-11 73.6 185 30.8
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 5.5e-10 68.6 128 30.5
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 9.4e-10 67.8 177 29.4
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-09 67.4 106 38.7
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-09 67.4 146 32.2
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 1.8e-08 63.5 45 68.9
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-08 62.8 134 29.1
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.7e-08 61.6 109 34.9
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 8.8e-08 61.2 166 30.1
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-07 60.8 116 37.1
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-07 60.8 174 29.9
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-07 60.5 124 29.8
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 9.7e-07 57.8 169 29.0
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 8.2e-06 54.7 176 25.6


User provided reference genes

Program Settings