Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08424 Brassica carinata HOM05D005343 ORTHO05D007153 9.9e-83 310.1 157 100.0
BcaC07g39858 Brassica carinata HOM05D005343 ORTHO05D007153 5.8e-75 284.3 152 94.1
C08p30620 Brassica napus HOM05D005343 ORTHO05D007153 5.8e-75 284.3 152 94.1
BolC8t50678H Brassica oleracea HOM05D005343 ORTHO05D007153 5.8e-75 284.3 152 94.1
A09p48330 Brassica napus HOM05D005343 ORTHO05D007153 9.9e-75 283.5 152 93.4
BraA09t40285Z Brassica rapa HOM05D005343 ORTHO05D007153 9.9e-75 283.5 152 93.4
Sp5g07070 Schrenkiella parvula HOM05D005343 ORTHO05D007153 1.7e-74 282.7 152 94.1
Thhalv10010210m.g Eutrema salsugineum HOM05D005343 ORTHO05D007153 3.8e-74 281.6 152 93.4
BcaB01g00104 Brassica carinata HOM05D005343 ORTHO05D007153 8.4e-74 280.4 152 92.8
AT3G55400 Arabidopsis thaliana HOM05D005343 ORTHO05D007153 5.5e-73 277.7 152 91.4
CARHR165410 Cardamine hirsuta HOM05D005343 ORTHO05D007153 9.3e-73 276.9 152 92.1
Carub.0005s2211 Capsella rubella HOM05D005343 ORTHO05D007153 1.6e-72 276.2 152 90.8
AL5G36550 Arabidopsis lyrata HOM05D005343 ORTHO05D007153 7.9e-72 273.9 152 90.1
A04p04540 Brassica napus HOM05D005343 ORTHO05D007153 1.0e-71 273.5 148 93.2
BraA04t16165Z Brassica rapa HOM05D005343 ORTHO05D007153 2.3e-71 272.3 148 92.6
Aa31LG10G10420 Aethionema arabicum HOM05D005343 ORTHO05D007153 2.1e-69 265.8 152 86.8
THA.LOC104807113 Tarenaya hassleriana HOM05D005343 ORTHO05D007153 8.2e-69 263.8 152 86.8
CiPaw.01G284500 Carya illinoinensis HOM05D005343 ORTHO05D007153 9.0e-68 260.4 152 84.2
CANSAT56G3579 Cannabis sativa HOM05D005343 ORTHO05D007153 1.0e-66 256.9 152 84.2
CANSAT56G3076 Cannabis sativa HOM05D005343 ORTHO05D007153 1.3e-66 256.5 152 84.2
CSS0002854 Camellia sinensis var. sinensis HOM05D005343 ORTHO05D007153 2.2e-66 255.8 152 84.2
Aqoxy4G02977 Aquilegia oxysepala HOM05D005343 ORTHO05D007153 4.9e-66 254.6 152 83.6
COL.COLO4_14979 Corchorus olitorius HOM05D005343 ORTHO05D007153 6.5e-66 254.2 152 84.2
FAN02G3866 Fragaria x ananassa HOM05D005343 ORTHO05D007153 8.4e-66 253.8 150 83.3
FAN09G3765 Fragaria x ananassa HOM05D005343 ORTHO05D007153 8.4e-66 253.8 150 83.3
FAN14G3830 Fragaria x ananassa HOM05D005343 ORTHO05D007153 8.4e-66 253.8 150 83.3
Cfa001500 Carpinus fangiana HOM05D005343 ORTHO05D007153 1.1e-65 253.4 155 81.9
Lj5g0009366 Lotus japonicus HOM05D005343 ORTHO05D007153 1.1e-65 253.4 152 82.2
CsaV3_5G026430 Cucumis sativus L. HOM05D005343 ORTHO05D007153 1.4e-65 253.1 152 82.9
arahy.Tifrunner.gnm1.ann1.23BIS9 Arachis hypogaea HOM05D005343 ORTHO05D007153 1.9e-65 252.7 152 82.9
arahy.Tifrunner.gnm1.ann1.VWL0PE Arachis hypogaea HOM05D005343 ORTHO05D007153 1.9e-65 252.7 152 82.9
FvH4_6g51210 Fragaria vesca HOM05D005343 ORTHO05D007153 2.5e-65 252.3 152 82.2
Manes.10G032600 Manihot esculenta HOM05D005343 ORTHO05D007153 2.5e-65 252.3 152 82.9
Prupe.2G232400 Prunus persica HOM05D005343 ORTHO05D007153 2.5e-65 252.3 152 82.9
RcHm_v2.0_Chr3g0483011 Rosa chinensis HOM05D005343 ORTHO05D007153 2.5e-65 252.3 152 82.2
ClCG09G020030 Citrullus lanatus HOM05D005343 ORTHO05D007153 3.2e-65 251.9 152 82.2
Rhsim09G0164800 Rhododendron simsii HOM05D005343 ORTHO05D007153 3.2e-65 251.9 152 82.9
Cpa.g.sc1.387 Carica papaya HOM05D005343 ORTHO05D007153 4.2e-65 251.5 152 82.9
Gorai.011G256000 Gossypium raimondii HOM05D005343 ORTHO05D007153 5.5e-65 251.1 152 83.6
GSVIVG01016575001 Vitis vinifera HOM05D005343 ORTHO05D007153 5.5e-65 251.1 152 82.2
Gohir.D10G225000 Gossypium hirsutum HOM05D005343 ORTHO05D007153 7.1e-65 250.8 152 83.6
HanXRQChr09g0247741 Helianthus annuus HOM05D005343 ORTHO05D007153 7.1e-65 250.8 152 81.6
MELO3C025447.2 Cucumis melo HOM05D005343 ORTHO05D007153 1.2e-64 250.0 152 81.6
Ca_11289_v3 Cicer arietinum L. HOM05D005343 ORTHO05D007153 1.6e-64 249.6 152 80.9
Glyma.10G289600 Glycine max HOM05D005343 ORTHO05D007153 1.6e-64 249.6 149 83.2
Glyma.20G099600 Glycine max HOM05D005343 ORTHO05D007153 1.6e-64 249.6 152 82.9
QL08p059100 Quercus lobata HOM05D005343 ORTHO05D007153 1.6e-64 249.6 152 80.9
Gohir.A10G216000 Gossypium hirsutum HOM05D005343 ORTHO05D007153 2.1e-64 249.2 152 82.9
PSO541G2783 Papaver somniferum HOM05D005343 ORTHO05D007153 2.1e-64 249.2 149 83.2
Potri.010G207300 Populus trichocarpa HOM05D005343 ORTHO05D007153 2.1e-64 249.2 152 81.6
PGR142G2259 Punica granatum HOM05D005343 ORTHO05D007153 2.1e-64 249.2 152 80.9
Sed0015228 Sechium edule HOM05D005343 ORTHO05D007153 2.7e-64 248.8 152 82.2
Lj8A86G38 Lonicera japonica HOM05D005343 ORTHO05D007153 3.5e-64 248.4 152 82.2
Phvul.007G011800 Phaseolus vulgaris HOM05D005343 ORTHO05D007153 3.5e-64 248.4 152 81.6
TPR.G14011 Trifolium pratense HOM05D005343 ORTHO05D007153 3.5e-64 248.4 152 80.9
VMungo0720G2355 Vigna mungo HOM05D005343 ORTHO05D007153 3.5e-64 248.4 152 81.6
Medtr1g018280 Medicago truncatula HOM05D005343 ORTHO05D007153 4.6e-64 248.1 149 81.9
Dinv25995 Davidia involucrata HOM05D005343 ORTHO05D007153 6.0e-64 247.7 152 80.9
HPP92_007845 Vanilla planifolia HOM05D005343 ORTHO05D007153 6.0e-64 247.7 152 80.3
Dinv31439 Davidia involucrata HOM05D005343 ORTHO05D007153 7.9e-64 247.3 152 81.6
Hma1.2p1_2133F.1_g314780 Hydrangea macrophylla HOM05D005343 ORTHO05D007153 1.3e-63 246.5 152 80.9
Psat6g236000 Pisum sativum HOM05D005343 ORTHO05D007153 1.3e-63 246.5 152 80.3
Sabra10G0160100 Salix brachista HOM05D005343 ORTHO05D007153 1.3e-63 246.5 152 81.6
Sc04g0005120 Simmondsia chinensis HOM05D005343 ORTHO05D007153 1.8e-63 246.1 152 80.9
PSO339G4546 Papaver somniferum HOM05D005343 ORTHO05D007153 2.3e-63 245.7 152 80.9
FvH4_6g24170 Fragaria vesca HOM05D005343 ORTHO05D007153 3.0e-63 245.4 152 80.3
Nn7g38223 Nelumbo nucifera HOM05D005343 ORTHO05D007153 3.0e-63 245.4 152 80.9
Ciclev10030995m.g Citrus clementina HOM05D005343 ORTHO05D007153 3.9e-63 245.0 152 80.3
Eucgr.J00041 Eucalyptus grandis HOM05D005343 ORTHO05D007153 3.9e-63 245.0 152 79.6
MD01G1125100 Malus domestica HOM05D005343 ORTHO05D007153 6.7e-63 244.2 152 79.6
Thecc.10G046300 Theobroma cacao HOM05D005343 ORTHO05D007153 6.7e-63 244.2 152 80.9
Medtr1g115295 Medicago truncatula HOM05D005343 ORTHO05D007153 8.7e-63 243.8 152 79.6
EL10Ac2g03414 Beta vulgaris HOM05D005343 ORTHO05D007153 2.5e-62 242.3 152 79.6
ECA232G2382 Erigeron canadensis HOM05D005343 ORTHO05D007153 2.5e-62 242.3 152 79.6
TWI63G0552 Tripterygium wilfordii HOM05D005343 ORTHO05D007153 2.5e-62 242.3 152 79.6
Migut.E01300 Erythranthe guttata HOM05D005343 ORTHO05D007153 3.3e-62 241.9 155 75.5
AUR62040959 Chenopodium quinoa HOM05D005343 ORTHO05D007153 4.3e-62 241.5 152 79.6
Oeu059403.2 Olea europaea HOM05D005343 ORTHO05D007153 4.3e-62 241.5 152 78.3
MD07G1194800 Malus domestica HOM05D005343 ORTHO05D007153 5.7e-62 241.1 152 78.9
Lalb_Chr06g0164311 Lupinus albus HOM05D005343 ORTHO05D007153 9.7e-62 240.4 141 84.4
CDE04G3770 Ceratophyllum demersum HOM05D005343 ORTHO05D007153 1.3e-61 240.0 152 77.0
Nitab4.5_0001831g0140 Nicotiana tabacum HOM05D005343 ORTHO05D007153 1.3e-61 240.0 152 77.6
Nitab4.5_0006342g0040 Nicotiana tabacum HOM05D005343 ORTHO05D007153 1.3e-61 240.0 152 78.3
AUR62038368 Chenopodium quinoa HOM05D005343 ORTHO05D007153 1.6e-61 239.6 152 78.9
PSO384G0408 Papaver somniferum HOM05D005343 ORTHO05D007153 2.1e-61 239.2 152 78.9
Cc02_g08110 Coffea canephora HOM05D005343 ORTHO05D007153 6.3e-61 237.7 151 77.5
Atru.BG.276.p Acer truncatum HOM05D005343 ORTHO05D007153 8.2e-61 237.3 152 79.6
ATR0730G097 Amborella trichopoda HOM05D005343 ORTHO05D007153 1.4e-60 236.5 152 77.6
Hund12544 Selenicereus undatus HOM05D005343 ORTHO05D007153 9.0e-60 233.8 152 75.7
Solyc05g054600.3 Solanum lycopersicum HOM05D005343 ORTHO05D007153 9.0e-60 233.8 152 76.3
CAN.G1013.7 Capsicum annuum HOM05D005343 ORTHO05D007153 1.2e-59 233.4 152 76.3
Sopen05g033080 Solanum pennellii HOM05D005343 ORTHO05D007153 1.5e-59 233.0 152 76.3
Os03g0209600 Oryza sativa ssp. japonica HOM05D005343 ORTHO05D007153 7.6e-59 230.7 152 74.3
SGA_v2.0_scaffold165G38273 Striga asiatica HOM05D005343 ORTHO05D007153 1.0e-58 230.3 152 73.7
PGSC0003DMG400023422 Solanum tuberosum HOM05D005343 ORTHO05D007153 1.1e-57 226.9 152 75.0
unitig_62.g23894 Utricularia gibba HOM05D005343 ORTHO05D007153 5.5e-57 224.6 149 71.1
DCAR_015189 Daucus carota HOM05D005343 ORTHO05D007153 3.6e-56 221.9 152 73.0
Lsat_1_v5_gn_9_65321 Lactuca sativa HOM05D005343 ORTHO05D007153 1.1e-54 216.9 163 70.6
SalBow2G3494 Salvia bowleyana HOM05D005343 ORTHO05D007153 1.3e-53 213.4 133 78.2
Peaxi162Scf00015g01517 Petunia axillaris HOM05D005343 ORTHO05D007153 3.8e-50 201.8 224 53.1
Mapoly0109s0018 Marchantia polymorpha HOM05D005343 ORTHO05D007153 5.5e-49 198.0 148 64.2
Actinidia29218 Actinidia chinensis HOM05D005343 ORTHO05D007153 1.8e-47 193.0 119 83.2
Pp3c15_23530 Physcomitrium patens HOM05D005343 ORTHO05D007153 1.1e-46 190.3 149 60.4
SMO196G0053 Selaginella moellendorffii HOM05D005343 ORTHO05D007153 2.0e-46 189.5 150 62.7
TAR636G1387 Trochodendron aralioides HOM05D005343 ORTHO05D007153 2.9e-42 175.6 102 86.3
Haze_17041 Corylus avellana HOM05D005343 ORTHO05D007153 4.2e-41 171.8 98 86.7
Duzib114G0552 Durio zibethinus HOM05D005343 ORTHO05D007153 5.5e-41 171.4 97 88.7
FAN14G5877 Fragaria x ananassa HOM05D005343 ORTHO05D007153 4.4e-38 161.8 93 82.8
BolC4t25263H Brassica oleracea HOM05D005343 ORTHO05D007153 2.2e-37 159.5 93 91.4
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.5e-33 146.0 80 85.0
SEGI_38333 Sequoiadendron giganteum HOM05D005343 ORTHO05D007153 1.6e-32 143.3 96 71.9
FAN09G1498 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.1e-32 142.9 84 82.1
PRCOL_00006366 Prasinoderma coloniale HOM05D005343 ORTHO05D007153 7.5e-30 134.4 149 49.7
Cre12.g487100 Chlamydomonas reinhardtii HOM05D005343 ORTHO05D007153 7.0e-28 127.9 150 46.0
BcaC02g09753 Brassica carinata HOM05D005343 ORTHO05D007153 1.0e-26 124.0 74 89.2
BcaC02g09754 Brassica carinata HOM05D005343 ORTHO05D007153 2.9e-26 122.5 61 96.7
C04p36970 Brassica napus HOM05D005343 ORTHO05D007153 2.9e-26 122.5 61 96.7
BolC4t25262H Brassica oleracea HOM05D005343 ORTHO05D007153 2.9e-26 122.5 61 96.7
Cpa.g.sc1.385 Carica papaya HOM05D005343 ORTHO05D007153 1.1e-25 120.6 72 80.6
RcHm_v2.0_Chr3g0482991 Rosa chinensis HOM05D005343 ORTHO05D007153 4.2e-25 118.6 68 85.3
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 3.6e-24 115.5 98 66.3
Zm00001eb007130 Zea mays HOM05D005343 ORTHO05D007153 2.3e-23 112.8 59 88.1
CBR_g833 Chara braunii HOM05D005343 ORTHO05D007153 8.6e-18 94.4 60 71.7
Pp3c12_10530 Physcomitrium patens HOM05D005343 ORTHO05D007153 4.7e-16 88.6 58 69.0
COL.COLO4_03753 Corchorus olitorius HOM05D005343 ORTHO05D007153 1.0e-15 87.4 77 62.3
TAR636G2926 Trochodendron aralioides HOM05D005343 ORTHO05D007153 8.9e-15 84.3 55 74.5
TAR636G2167 Trochodendron aralioides HOM05D005343 ORTHO05D007153 1.2e-14 84.0 52 76.9
MCO07G098 Micromonas commoda HOM05D005343 ORTHO05D007153 2.4e-12 76.3 145 29.0
C04p36980 Brassica napus HOM05D005343 ORTHO05D007153 5.6e-09 65.1 38 89.5
Haze_26590 Corylus avellana HOM05D001184 ORTHO05D003397 9.8e-06 54.3 131 26.7
Haze_27266 Corylus avellana HOM05D005343 ORTHO05D007153 9.8e-06 54.3 41 56.1


User provided reference genes

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