Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08413 Brassica carinata HOM05D001415 ORTHO05D001075 2.7e-45 184.9 89 100.0
BcaC02g09763 Brassica carinata HOM05D001415 ORTHO05D001075 2.7e-45 184.9 89 100.0
C04p36850 Brassica napus HOM05D001415 ORTHO05D001075 2.7e-45 184.9 89 100.0
A04p04410 Brassica napus HOM05D001415 ORTHO05D001075 1.5e-43 179.1 89 96.6
BolC4t25114H Brassica oleracea HOM05D001415 ORTHO05D001075 1.5e-43 179.1 89 97.8
BraA04t16154Z Brassica rapa HOM05D001415 ORTHO05D001075 1.5e-43 179.1 89 96.6
BcaB02g08412 Brassica carinata HOM05D001415 ORTHO05D001075 2.2e-42 175.3 89 95.5
BcaC07g39877 Brassica carinata HOM05D001415 ORTHO05D001075 1.9e-30 135.6 82 85.4
Thhalv10010948m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 9.4e-30 133.3 93 73.1
A09p48520 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-29 132.9 82 84.1
C08p30820 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-29 132.9 82 84.1
BraA09t40304Z Brassica rapa HOM05D001415 ORTHO05D001075 1.2e-29 132.9 82 84.1
BolC8t50708H Brassica oleracea HOM05D001415 ORTHO05D001075 8.0e-29 130.2 82 82.9
BcaB01g00087 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-27 126.3 84 73.8
AL5G36670 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 6.8e-20 100.5 79 65.8
AT3G55515 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 9.8e-19 96.7 83 63.9
CARHR165570 Cardamine hirsuta HOM05D001415 ORTHO05D001075 3.1e-17 91.7 76 64.5
Carub.0005s2224 Capsella rubella HOM05D001415 ORTHO05D001075 4.1e-17 91.3 81 61.7
BolC4t28246H Brassica oleracea HOM05D001415 ORTHO05D001075 1.1e-14 83.2 78 53.8
A04p30340 Brassica napus HOM05D001415 ORTHO05D001075 4.2e-14 81.3 78 52.6
BraA04t18474Z Brassica rapa HOM05D001415 ORTHO05D001075 4.2e-14 81.3 78 52.6
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 5.5e-14 80.9 81 53.1
AL4G37150 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 7.2e-14 80.5 73 57.5
AT2G39705 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 7.2e-14 80.5 73 57.5
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 7.2e-14 80.5 81 54.3
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 7.2e-14 80.5 81 54.3
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.2e-13 79.7 85 50.6
Carub.0004s2175 Capsella rubella HOM05D001415 ORTHO05D001075 1.6e-13 79.3 73 56.2
Thhalv10017695m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 2.1e-13 79.0 84 47.6
THA.LOC104810035 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.8e-13 78.6 85 50.6
Sp4g21960 Schrenkiella parvula HOM05D001415 ORTHO05D001075 6.1e-13 77.4 85 48.2
BcaC02g12100 Brassica carinata HOM05D001415 ORTHO05D001075 8.0e-13 77.0 84 48.8
A05p06700 Brassica napus HOM05D001415 ORTHO05D001075 8.0e-13 77.0 84 48.8
C04p07830 Brassica napus HOM05D001415 ORTHO05D001075 8.0e-13 77.0 84 48.8
BolC4t22402H Brassica oleracea HOM05D001415 ORTHO05D001075 8.0e-13 77.0 84 48.8
BraA05t19637Z Brassica rapa HOM05D001415 ORTHO05D001075 8.0e-13 77.0 84 48.8
BcaB02g09096 Brassica carinata HOM05D001415 ORTHO05D001075 1.0e-12 76.6 84 48.8
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.4e-12 76.3 82 47.6
THA.LOC109117081 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.3e-12 75.5 86 50.0
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 3.0e-12 75.1 84 50.0
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 6.8e-12 73.9 84 47.6
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.7e-11 70.9 68 50.0
Lalb_Chr15g0084661 Lupinus albus HOM05D001415 ORTHO05D001075 5.7e-11 70.9 79 49.4
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.3e-10 69.7 76 47.4
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.7e-10 69.3 90 44.4
Lalb_Chr18g0053201 Lupinus albus HOM05D001415 ORTHO05D001075 2.2e-10 68.9 68 50.0
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 2.8e-10 68.6 68 50.0
Gohir.A13G018500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.8e-10 68.6 78 44.9
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 3.7e-10 68.2 76 48.7
Potri.008G057800 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.7e-10 68.2 79 44.3
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 4.9e-10 67.8 65 47.7
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.1e-09 66.6 68 48.5
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.1e-09 66.6 70 48.6
Sabra08G0042400 Salix brachista HOM05D001415 ORTHO05D001075 1.1e-09 66.6 77 50.6
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 1.1e-09 66.6 68 50.0
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 1.4e-09 66.2 81 45.7
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 1.4e-09 66.2 80 43.8
DCAR_027603 Daucus carota HOM05D001415 ORTHO05D001075 1.4e-09 66.2 74 47.3
ECA238G4842 Erigeron canadensis HOM05D001415 ORTHO05D001075 1.8e-09 65.9 80 48.8
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 1.8e-09 65.9 73 47.9
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 4.1e-09 64.7 68 45.6
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 4.1e-09 64.7 79 46.8
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 5.4e-09 64.3 68 48.5
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 5.4e-09 64.3 65 49.2
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 7.0e-09 63.9 68 50.0
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 7.0e-09 63.9 79 44.3
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 7.0e-09 63.9 65 49.2
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 1.2e-08 63.2 68 45.6
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.6e-08 62.8 78 43.6
Migut.F01961 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.0e-08 62.4 48 62.5
Gohir.D13G019500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.0e-08 62.4 65 46.2
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 2.0e-08 62.4 68 47.1
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.0e-08 62.4 68 45.6
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 2.7e-08 62.0 83 42.2
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 2.7e-08 62.0 79 43.0
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 3.5e-08 61.6 86 44.2
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 4.5e-08 61.2 80 46.2
Lalb_Chr10g0104651 Lupinus albus HOM05D001415 ORTHO05D001075 4.5e-08 61.2 84 47.6
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 4.5e-08 61.2 89 42.7
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 5.9e-08 60.8 78 46.2
SalBow6G6345 Salvia bowleyana HOM05D001415 ORTHO05D001075 5.9e-08 60.8 72 43.1
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 7.8e-08 60.5 72 45.8
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 7.8e-08 60.5 64 53.1
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 1.0e-07 60.1 70 44.3
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.3e-07 59.7 67 46.3
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.3e-07 59.7 77 45.5
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 1.3e-07 59.7 67 46.3
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 1.3e-07 59.7 69 44.9
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 1.7e-07 59.3 91 39.6
Prupe.3G029700 Prunus persica HOM05D001415 ORTHO05D001075 1.7e-07 59.3 48 56.2
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 1.7e-07 59.3 78 43.6
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 2.9e-07 58.5 100 38.0
Potri.002G235101 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.9e-07 58.5 43 60.5
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 3.9e-07 58.2 69 42.0
Duzib114G0513 Durio zibethinus HOM05D001415 ORTHO05D001075 3.9e-07 58.2 31 77.4
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 3.9e-07 58.2 77 41.6
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gorai.013G021600 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-07 58.2 31 77.4
Duzib128G0356 Durio zibethinus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 31 74.2
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 5.0e-07 57.8 34 73.5
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 5.0e-07 57.8 34 73.5
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 53 56.6
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 31 77.4
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 5.0e-07 57.8 34 67.6
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 5.0e-07 57.8 77 41.6
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 5.0e-07 57.8 76 43.4
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 5.0e-07 57.8 71 40.8
TPR.G15833 Trifolium pratense HOM05D001415 ORTHO05D001075 5.0e-07 57.8 80 41.2
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 6.6e-07 57.4 71 40.8
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 6.6e-07 57.4 46 54.3
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 6.6e-07 57.4 46 54.3
SalBow6G2192 Salvia bowleyana HOM05D001415 ORTHO05D001075 6.6e-07 57.4 46 58.7
Thecc.10G036800 Theobroma cacao HOM05D001415 ORTHO05D001075 6.6e-07 57.4 78 42.3
Eucgr.J01236 Eucalyptus grandis HOM05D001415 ORTHO05D001075 8.6e-07 57.0 29 79.3
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 8.6e-07 57.0 55 45.5
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 8.6e-07 57.0 31 74.2
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 8.6e-07 57.0 34 67.6
HPP92_006626 Vanilla planifolia HOM05D001415 ORTHO05D001075 8.6e-07 57.0 81 40.7
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-06 56.6 49 51.0
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 1.1e-06 56.6 49 51.0
CSS0014027 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 1.1e-06 56.6 36 63.9
Gohir.A10G220900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
Gohir.D10G233100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
Gorai.011G266700 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
SalBow7G1955 Salvia bowleyana HOM05D001415 ORTHO05D001075 1.5e-06 56.2 43 55.8
Migut.I01146 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.9e-06 55.8 42 57.1
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 1.9e-06 55.8 50 50.0
SalBow1G2982 Salvia bowleyana HOM05D000007 ORTHO05D000521 1.9e-06 55.8 45 51.1
PGSC0003DMG400006357 Solanum tuberosum HOM05D001415 ORTHO05D001075 1.9e-06 55.8 59 47.5
MELO3C019818.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.5e-06 55.5 44 52.3
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 2.5e-06 55.5 63 47.6
Manes.04G152500 Manihot esculenta HOM05D001415 ORTHO05D001075 2.5e-06 55.5 41 63.4
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 3.3e-06 55.1 93 39.8
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.3e-06 55.1 31 71.0
Oeu012944.2 Olea europaea HOM05D001415 ORTHO05D001075 3.3e-06 55.1 63 44.4
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 4.3e-06 54.7 40 52.5
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 4.3e-06 54.7 31 71.0
CsaV3_6G036630 Cucumis sativus L. HOM05D001415 ORTHO05D001075 4.3e-06 54.7 44 52.3
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 4.3e-06 54.7 37 59.5
PSO135G0377 Papaver somniferum HOM05D001415 ORTHO05D001075 4.3e-06 54.7 45 55.6
Potri.001G161200 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.3e-06 54.7 35 62.9
Aa31LG8G1630 Aethionema arabicum HOM05D000146 ORTHO05D007947 5.6e-06 54.3 80 41.2
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 5.6e-06 54.3 31 67.7
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 5.6e-06 54.3 38 60.5
Potri.003G073900 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.6e-06 54.3 31 71.0
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 5.6e-06 54.3 55 45.5
ATR0626G034 Amborella trichopoda HOM05D001415 ORTHO05D001075 7.3e-06 53.9 36 61.1
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
DCAR_022634 Daucus carota HOM05D001415 ORTHO05D001075 7.3e-06 53.9 36 63.9
Dinv37809 Davidia involucrata HOM05D001415 ORTHO05D001075 7.3e-06 53.9 34 70.6
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 7.3e-06 53.9 38 60.5
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 7.3e-06 53.9 44 50.0
Atru.chr1.4181 Acer truncatum HOM05D001415 ORTHO05D001075 9.5e-06 53.5 36 61.1
HPP92_027005 Vanilla planifolia HOM05D001415 ORTHO05D001075 9.5e-06 53.5 65 36.9


User provided reference genes

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