Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08412 Brassica carinata HOM05D001415 ORTHO05D001075 9.4e-46 186.4 89 100.0
BolC4t25114H Brassica oleracea HOM05D001415 ORTHO05D001075 2.0e-43 178.7 89 96.6
BcaB02g08413 Brassica carinata HOM05D001415 ORTHO05D001075 2.2e-42 175.3 89 95.5
BcaC02g09763 Brassica carinata HOM05D001415 ORTHO05D001075 2.2e-42 175.3 89 95.5
C04p36850 Brassica napus HOM05D001415 ORTHO05D001075 2.2e-42 175.3 89 95.5
A04p04410 Brassica napus HOM05D001415 ORTHO05D001075 2.8e-42 174.9 89 94.4
BraA04t16154Z Brassica rapa HOM05D001415 ORTHO05D001075 2.8e-42 174.9 89 94.4
A09p48520 Brassica napus HOM05D001415 ORTHO05D001075 1.0e-28 129.8 82 81.7
C08p30820 Brassica napus HOM05D001415 ORTHO05D001075 1.0e-28 129.8 82 81.7
BraA09t40304Z Brassica rapa HOM05D001415 ORTHO05D001075 1.0e-28 129.8 82 81.7
BolC8t50708H Brassica oleracea HOM05D001415 ORTHO05D001075 2.3e-28 128.6 82 81.7
BcaC07g39877 Brassica carinata HOM05D001415 ORTHO05D001075 6.7e-28 127.1 82 80.5
Thhalv10010948m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 6.7e-28 127.1 93 69.9
BcaB01g00087 Brassica carinata HOM05D001415 ORTHO05D001075 4.4e-27 124.4 84 72.6
AT3G55515 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 5.2e-20 100.9 83 65.1
AL5G36670 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 8.8e-20 100.1 79 65.8
Carub.0005s2224 Capsella rubella HOM05D001415 ORTHO05D001075 1.2e-16 89.7 81 58.0
CARHR165570 Cardamine hirsuta HOM05D001415 ORTHO05D001075 2.0e-16 89.0 76 63.2
BolC4t28246H Brassica oleracea HOM05D001415 ORTHO05D001075 3.3e-14 81.6 85 52.9
A04p30340 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-13 79.7 85 51.8
BraA04t18474Z Brassica rapa HOM05D001415 ORTHO05D001075 1.2e-13 79.7 85 51.8
AL4G37150 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.6e-13 79.3 73 57.5
AT2G39705 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.6e-13 79.3 73 57.5
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 2.1e-13 79.0 85 54.1
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 2.1e-13 79.0 85 54.1
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 2.8e-13 78.6 89 50.6
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 3.6e-13 78.2 84 51.2
Carub.0004s2175 Capsella rubella HOM05D001415 ORTHO05D001075 3.6e-13 78.2 73 56.2
Sp4g21960 Schrenkiella parvula HOM05D001415 ORTHO05D001075 8.0e-13 77.0 92 48.9
THA.LOC104810035 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 1.4e-12 76.3 89 49.4
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.0e-12 75.1 82 47.6
Thhalv10017695m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 4.0e-12 74.7 91 49.5
BcaC02g12100 Brassica carinata HOM05D001415 ORTHO05D001075 8.9e-12 73.6 88 47.7
A05p06700 Brassica napus HOM05D001415 ORTHO05D001075 8.9e-12 73.6 88 47.7
C04p07830 Brassica napus HOM05D001415 ORTHO05D001075 8.9e-12 73.6 88 47.7
BolC4t22402H Brassica oleracea HOM05D001415 ORTHO05D001075 8.9e-12 73.6 88 47.7
BraA05t19637Z Brassica rapa HOM05D001415 ORTHO05D001075 8.9e-12 73.6 88 47.7
BcaB02g09096 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-11 73.2 88 47.7
THA.LOC109117081 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.6e-11 72.0 90 48.9
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 5.7e-11 70.9 84 48.8
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 7.5e-11 70.5 83 48.2
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 9.8e-11 70.1 68 50.0
Lalb_Chr18g0053201 Lupinus albus HOM05D001415 ORTHO05D001075 3.7e-10 68.2 68 50.0
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 4.9e-10 67.8 90 44.4
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 6.3e-10 67.4 76 46.1
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 8.3e-10 67.0 65 47.7
Gohir.A13G018500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.3e-10 67.0 78 44.9
Potri.008G057800 Populus trichocarpa HOM05D001415 ORTHO05D001075 8.3e-10 67.0 79 44.3
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 1.1e-09 66.6 68 50.0
Lalb_Chr15g0084661 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-09 66.6 79 45.6
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 1.4e-09 66.2 68 50.0
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.8e-09 65.9 68 48.5
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 2.4e-09 65.5 70 48.6
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 4.1e-09 64.7 68 45.6
ECA238G4842 Erigeron canadensis HOM05D001415 ORTHO05D001075 5.4e-09 64.3 80 48.8
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 7.0e-09 63.9 68 45.6
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 7.0e-09 63.9 68 48.5
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 7.0e-09 63.9 81 44.4
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 9.2e-09 63.5 68 50.0
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 9.2e-09 63.5 65 49.2
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 1.2e-08 63.2 77 45.5
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.2e-08 63.2 65 47.7
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 1.6e-08 62.8 68 45.6
Migut.F01961 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.6e-08 62.8 48 62.5
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 1.6e-08 62.8 76 46.1
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 1.6e-08 62.8 66 50.0
DCAR_027603 Daucus carota HOM05D001415 ORTHO05D001075 2.7e-08 62.0 74 45.9
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 2.7e-08 62.0 76 43.4
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 2.7e-08 62.0 73 46.6
Sabra08G0042400 Salix brachista HOM05D001415 ORTHO05D001075 2.7e-08 62.0 75 45.3
Gohir.D13G019500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.5e-08 61.6 65 46.2
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 3.5e-08 61.6 71 47.9
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 3.5e-08 61.6 81 44.4
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.5e-08 61.6 68 45.6
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 5.9e-08 60.8 83 42.2
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 5.9e-08 60.8 89 42.7
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 7.8e-08 60.5 64 53.1
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 1.0e-07 60.1 78 43.6
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 1.0e-07 60.1 81 44.4
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 1.0e-07 60.1 68 45.6
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 1.0e-07 60.1 70 47.1
SalBow6G6345 Salvia bowleyana HOM05D001415 ORTHO05D001075 1.0e-07 60.1 72 43.1
Lalb_Chr10g0104651 Lupinus albus HOM05D001415 ORTHO05D001075 1.3e-07 59.7 83 45.8
TPR.G15833 Trifolium pratense HOM05D001415 ORTHO05D001075 1.3e-07 59.7 36 69.4
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 1.7e-07 59.3 80 43.8
Prupe.3G029700 Prunus persica HOM05D001415 ORTHO05D001075 1.7e-07 59.3 48 56.2
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.3e-07 58.9 74 44.6
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.3e-07 58.9 70 45.7
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 2.3e-07 58.9 68 48.5
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 2.3e-07 58.9 76 43.4
Potri.002G235101 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.9e-07 58.5 43 60.5
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 3.9e-07 58.2 91 39.6
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 3.9e-07 58.2 77 45.5
Duzib114G0513 Durio zibethinus HOM05D001415 ORTHO05D001075 3.9e-07 58.2 31 77.4
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-07 58.2 34 70.6
Gorai.013G021600 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-07 58.2 31 77.4
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 3.9e-07 58.2 64 51.6
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 3.9e-07 58.2 78 43.6
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 5.0e-07 57.8 69 42.0
Duzib128G0356 Durio zibethinus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 31 74.2
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 5.0e-07 57.8 34 73.5
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 5.0e-07 57.8 34 73.5
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 5.0e-07 57.8 31 77.4
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 5.0e-07 57.8 34 67.6
SalBow6G2192 Salvia bowleyana HOM05D001415 ORTHO05D001075 5.0e-07 57.8 46 58.7
HPP92_006626 Vanilla planifolia HOM05D001415 ORTHO05D001075 5.0e-07 57.8 81 42.0
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 6.6e-07 57.4 46 54.3
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 6.6e-07 57.4 46 54.3
Eucgr.J01236 Eucalyptus grandis HOM05D001415 ORTHO05D001075 8.6e-07 57.0 29 79.3
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 8.6e-07 57.0 77 41.6
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 8.6e-07 57.0 89 39.3
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 8.6e-07 57.0 31 74.2
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 8.6e-07 57.0 34 67.6
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 8.6e-07 57.0 71 40.8
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 1.1e-06 56.6 49 51.0
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 1.1e-06 56.6 49 51.0
CSS0014027 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 1.1e-06 56.6 36 63.9
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.1e-06 56.6 72 45.8
Gohir.A10G220900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
Gohir.D10G233100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
Gorai.011G266700 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.1e-06 56.6 37 64.9
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-06 56.6 39 64.1
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 1.1e-06 56.6 77 41.6
Thecc.10G036800 Theobroma cacao HOM05D001415 ORTHO05D001075 1.1e-06 56.6 78 42.3
Migut.I01146 Erythranthe guttata HOM05D001415 ORTHO05D001075 1.5e-06 56.2 42 57.1
SalBow7G1955 Salvia bowleyana HOM05D001415 ORTHO05D001075 1.5e-06 56.2 43 55.8
PGSC0003DMG400006357 Solanum tuberosum HOM05D001415 ORTHO05D001075 1.5e-06 56.2 59 47.5
MELO3C019818.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.9e-06 55.8 44 52.3
SalBow1G2982 Salvia bowleyana HOM05D000007 ORTHO05D000521 1.9e-06 55.8 45 51.1
Manes.04G152500 Manihot esculenta HOM05D001415 ORTHO05D001075 2.5e-06 55.5 41 63.4
CsaV3_6G036630 Cucumis sativus L. HOM05D001415 ORTHO05D001075 3.3e-06 55.1 44 52.3
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 3.3e-06 55.1 63 47.6
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 3.3e-06 55.1 53 45.3
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.3e-06 55.1 31 71.0
Potri.001G161200 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.3e-06 55.1 35 62.9
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 4.3e-06 54.7 40 52.5
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 4.3e-06 54.7 31 71.0
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 4.3e-06 54.7 74 44.6
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 4.3e-06 54.7 37 59.5
PSO135G0377 Papaver somniferum HOM05D001415 ORTHO05D001075 4.3e-06 54.7 45 55.6
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 5.6e-06 54.3 31 67.7
Dinv37809 Davidia involucrata HOM05D001415 ORTHO05D001075 5.6e-06 54.3 34 70.6
Potri.003G073900 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.6e-06 54.3 31 71.0
ATR0626G034 Amborella trichopoda HOM05D001415 ORTHO05D001075 7.3e-06 53.9 36 61.1
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 7.3e-06 53.9 49 46.9
DCAR_022634 Daucus carota HOM05D001415 ORTHO05D001075 7.3e-06 53.9 36 63.9
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 7.3e-06 53.9 38 60.5
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 7.3e-06 53.9 48 50.0
Oeu012944.2 Olea europaea HOM05D001415 ORTHO05D001075 7.3e-06 53.9 63 44.4
Potri.018G072101 Populus trichocarpa HOM05D008584 ORTHO05D010813 7.3e-06 53.9 44 50.0
Atru.chr1.4181 Acer truncatum HOM05D001415 ORTHO05D001075 9.5e-06 53.5 36 61.1
Gohir.A10G049600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.5e-06 53.5 35 60.0


User provided reference genes

Program Settings