Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 1.1e-81 306.6 156 100.0
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 4.4e-67 258.1 157 87.3
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 6.4e-66 254.2 151 88.1
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 5.4e-65 251.1 152 85.5
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 3.5e-64 248.4 149 86.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 7.8e-64 247.3 152 84.9
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 5.1e-63 244.6 157 84.1
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 4.5e-59 231.5 153 84.3
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 4.2e-57 224.9 153 79.1
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 6.0e-56 221.1 146 79.5
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.8e-55 219.5 152 78.3
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.8e-55 219.5 152 78.3
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.3e-55 219.2 152 77.6
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 3.0e-55 218.8 149 78.5
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 1.6e-53 213.0 149 76.5
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 1.6e-53 213.0 149 76.5
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.1e-52 210.3 149 75.8
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.1e-52 210.3 149 75.8
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.2e-48 196.8 155 71.6
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 2.1e-48 196.1 152 71.7
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 2.8e-45 185.7 156 67.9
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.2e-43 180.3 156 67.3
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 7.6e-43 177.6 161 64.6
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-42 177.2 125 76.8
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 4.5e-27 125.2 124 58.1
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.9e-26 122.5 147 53.7
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 1.9e-25 119.8 159 50.9
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.6e-24 116.7 154 50.6
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 3.6e-24 115.5 157 47.8
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 5.1e-23 111.7 145 49.0
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 5.1e-23 111.7 145 49.0
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 5.1e-23 111.7 145 49.0
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 6.7e-23 111.3 160 45.6
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.8e-23 110.9 145 49.7
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 3.3e-22 109.0 117 54.7
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 5.7e-22 108.2 151 51.7
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 7.4e-22 107.8 160 46.9
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.8e-21 105.9 130 52.3
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 3.7e-21 105.5 145 49.7
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 3.7e-21 105.5 59 93.2
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 3.7e-21 105.5 59 93.2
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 4.8e-21 105.1 160 46.9
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 6.3e-21 104.8 118 54.2
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 6.3e-21 104.8 117 50.4
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 6.3e-21 104.8 117 50.4
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 3.5e-19 99.0 147 49.0
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 2.7e-16 89.4 122 49.2
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.5e-09 67.0 134 39.6
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 7.2e-09 64.7 111 42.3
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.6e-08 63.5 62 56.5
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.1e-08 63.2 123 39.0
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 2.7e-08 62.8 130 38.5
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 4.7e-08 62.0 74 52.7
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.1e-08 61.6 146 38.4
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 8.0e-08 61.2 134 35.8
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 8.0e-08 61.2 59 52.5
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 8.0e-08 61.2 43 72.1
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.0e-07 60.8 137 41.6
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.4e-07 60.5 144 35.4
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.4e-07 60.5 54 61.1
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.4e-07 60.5 48 72.9
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.8e-07 60.1 43 69.8
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 2.3e-07 59.7 139 36.0
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.0e-07 59.3 132 32.6
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 3.0e-07 59.3 51 62.7
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 4.0e-07 58.9 40 72.5
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 4.0e-07 58.9 60 56.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 4.0e-07 58.9 47 68.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.2e-07 58.5 54 63.0
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 5.2e-07 58.5 144 34.7
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.2e-07 58.5 109 42.2
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.2e-07 58.5 132 32.6
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.7e-07 58.2 154 37.0
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.7e-07 58.2 49 57.1
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 6.7e-07 58.2 47 63.8
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 6.7e-07 58.2 84 47.6
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 8.8e-07 57.8 53 60.4
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 8.8e-07 57.8 48 64.6
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.8e-07 57.8 49 57.1
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.8e-07 57.8 49 57.1
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 8.8e-07 57.8 68 52.9
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 8.8e-07 57.8 117 38.5
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.2e-06 57.4 60 55.0
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.2e-06 57.4 52 61.5
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.2e-06 57.4 39 71.8
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.5e-06 57.0 145 36.6
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.5e-06 57.0 73 49.3
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.5e-06 57.0 42 66.7
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.0e-06 56.6 132 31.8
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 2.0e-06 56.6 49 61.2
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.6e-06 56.2 64 54.7
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 2.6e-06 56.2 53 66.0
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 2.6e-06 56.2 103 39.8
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 4.4e-06 55.5 110 37.3
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 4.4e-06 55.5 49 59.2
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.4e-06 55.5 49 59.2
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.4e-06 55.5 54 57.4
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 4.4e-06 55.5 54 57.4
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 4.4e-06 55.5 131 36.6
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 5.7e-06 55.1 136 34.6
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 5.7e-06 55.1 64 50.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 5.7e-06 55.1 43 65.1
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 5.7e-06 55.1 43 65.1
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 7.5e-06 54.7 151 31.8
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 7.5e-06 54.7 135 31.9
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 9.7e-06 54.3 90 47.8
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 9.7e-06 54.3 47 59.6
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.7e-06 54.3 71 46.5


User provided reference genes

Program Settings