Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 9.2e-75 283.5 145 100.0
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 3.7e-60 235.0 149 83.9
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 8.3e-60 233.8 151 85.4
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-58 229.2 153 84.3
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 8.6e-57 223.8 139 85.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 3.6e-55 218.4 137 84.7
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 3.6e-55 218.4 153 81.7
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 3.5e-50 201.8 153 77.1
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 6.6e-49 197.6 156 74.4
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 2.5e-48 195.7 155 74.8
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 2.5e-48 195.7 155 74.8
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 4.3e-48 194.9 155 74.2
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-47 192.6 155 73.5
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 6.9e-46 187.6 150 74.0
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 1.3e-44 183.3 150 72.7
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 1.3e-44 183.3 150 72.7
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 6.4e-44 181.0 153 70.6
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.1e-43 180.3 156 69.9
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.9e-43 179.5 150 71.3
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-43 179.5 150 71.3
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.3e-41 173.3 156 67.3
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 3.3e-40 168.7 165 64.2
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 2.1e-39 166.0 159 64.8
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 1.0e-33 147.1 128 68.8
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 6.2e-23 111.3 126 58.7
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.0e-22 107.5 147 51.0
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-21 106.3 68 83.8
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 2.0e-21 106.3 68 83.8
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 2.9e-20 102.4 141 48.9
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.4e-19 100.1 139 51.1
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 5.5e-19 98.2 132 52.3
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 7.1e-19 97.8 141 48.2
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 7.1e-19 97.8 139 51.8
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 3.5e-18 95.5 143 45.5
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.3e-17 93.6 143 48.3
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 3.9e-17 92.0 101 56.4
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 1.5e-16 90.1 142 48.6
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 1.9e-16 89.7 140 47.1
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 2.5e-16 89.4 140 47.1
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 2.5e-16 89.4 140 47.1
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 3.3e-16 89.0 102 56.9
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 5.7e-16 88.2 142 47.9
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 8.2e-15 84.3 101 52.5
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 8.2e-15 84.3 101 52.5
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.2e-15 84.3 149 44.3
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 3.1e-14 82.4 136 48.5
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 9.0e-14 80.9 105 50.5
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.2e-10 70.5 123 40.7
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.0e-08 63.2 112 41.1
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 4.3e-08 62.0 72 54.2
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 7.4e-08 61.2 40 72.5
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 1.3e-07 60.5 43 69.8
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.3e-07 60.5 58 58.6
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.3e-07 60.5 43 65.1
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 1.7e-07 60.1 44 75.0
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 2.2e-07 59.7 55 56.4
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 2.2e-07 59.7 75 49.3
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.2e-07 59.7 129 38.8
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.8e-07 59.3 44 72.7
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.8e-07 59.3 78 51.3
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.8e-07 59.3 108 41.7
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 2.8e-07 59.3 64 53.1
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 3.7e-07 58.9 65 53.8
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.8e-07 58.5 122 42.6
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 4.8e-07 58.5 43 67.4
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 4.8e-07 58.5 75 50.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 4.8e-07 58.5 124 37.1
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.8e-07 58.5 89 46.1
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 6.3e-07 58.2 133 32.3
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 6.3e-07 58.2 87 49.4
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.1e-06 57.4 40 70.0
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.1e-06 57.4 52 59.6
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.1e-06 57.4 116 37.1
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.1e-06 57.4 81 48.1
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 1.1e-06 57.4 39 71.8
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 53 60.4
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.4e-06 57.0 42 66.7
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.4e-06 57.0 110 40.9
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.4e-06 56.2 58 56.9
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.4e-06 56.2 45 60.0
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 2.4e-06 56.2 43 65.1
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 3.1e-06 55.8 165 32.7
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 3.1e-06 55.8 78 46.2
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 4.1e-06 55.5 83 50.6
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 4.1e-06 55.5 112 39.3
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.1e-06 55.5 108 38.9
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 4.1e-06 55.5 55 58.2
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 4.1e-06 55.5 119 38.7
QL03p028391 Quercus lobata HOM05D011447 ORTHO05D010069 4.1e-06 55.5 50 54.0
QL03p029028 Quercus lobata HOM05D011447 ORTHO05D010069 4.1e-06 55.5 50 54.0
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 5.3e-06 55.1 128 38.3
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 6.9e-06 54.7 92 45.7
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 9.1e-06 54.3 43 60.5


User provided reference genes

Program Settings