Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 7.7e-56 220.3 117 100.0
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 4.5e-48 194.5 117 90.6
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 5.9e-48 194.1 117 90.6
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 5.9e-48 194.1 117 90.6
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 5.9e-48 194.1 117 90.6
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 2.9e-47 191.8 117 88.9
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 5.2e-44 181.0 119 87.4
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 1.3e-42 176.4 118 83.1
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 2.8e-42 175.3 117 80.3
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 8.3e-42 173.7 117 79.5
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.7e-39 166.0 119 83.2
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 8.0e-37 157.1 119 76.5
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 5.7e-35 151.0 121 74.4
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 9.8e-35 150.2 108 79.6
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 9.8e-35 150.2 108 79.6
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 9.8e-35 150.2 108 79.6
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.7e-34 149.4 119 74.8
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.4e-33 145.6 120 75.0
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 2.8e-29 132.1 118 66.9
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 4.7e-29 131.3 118 65.3
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 4.7e-29 131.3 118 65.3
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 4.7e-29 131.3 118 65.3
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 8.0e-29 130.6 118 64.4
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 8.0e-29 130.6 118 66.9
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 8.0e-29 130.6 118 64.4
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.4e-28 129.8 118 64.4
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.4e-28 129.8 118 64.4
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 6.8e-28 127.5 118 63.6
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 6.8e-28 127.5 118 63.6
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-27 126.7 118 64.4
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 1.2e-27 126.7 118 64.4
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-27 126.3 118 64.4
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 9.8e-27 123.6 119 62.2
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.4e-25 119.0 119 60.5
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.4e-25 119.0 119 60.5
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 9.2e-25 117.1 124 57.3
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 9.2e-25 117.1 120 60.0
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.6e-24 116.3 118 60.2
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 6.0e-24 114.4 119 60.5
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 6.0e-24 114.4 119 60.5
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 5.0e-23 111.3 120 58.3
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.5e-22 109.0 124 58.1
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 2.8e-21 105.5 120 57.5
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 3.6e-21 105.1 123 59.3
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 3.0e-15 85.5 77 61.0
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 6.6e-15 84.3 68 61.8
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.1e-14 83.6 62 72.6
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 1.5e-14 83.2 100 54.0
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 2.5e-14 82.4 68 58.8
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 3.3e-14 82.0 95 52.6
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 5.6e-14 81.3 62 71.0
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 1.2e-13 80.1 66 66.7
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 1.6e-13 79.7 130 46.2
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.6e-13 79.7 69 62.3
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 2.1e-13 79.3 62 69.4
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 2.1e-13 79.3 71 62.0
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.8e-13 79.0 91 52.7
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 6.2e-13 77.8 125 42.4
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 6.2e-13 77.8 80 56.2
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 6.2e-13 77.8 62 67.7
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 6.2e-13 77.8 62 67.7
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 8.1e-13 77.4 69 58.0
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 1.1e-12 77.0 61 63.9
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 1.8e-12 76.3 66 60.6
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 2.3e-12 75.9 67 61.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.3e-12 75.9 67 61.2
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 2.3e-12 75.9 101 47.5
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 3.1e-12 75.5 123 43.9
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 4.0e-12 75.1 61 60.7
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.0e-12 75.1 73 60.3
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.2e-12 74.7 67 59.7
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.2e-12 74.7 67 59.7
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 8.9e-12 73.9 89 50.6
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 1.2e-11 73.6 107 46.7
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.2e-11 73.6 62 66.1
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 1.2e-11 73.6 87 48.3
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.5e-11 73.2 92 46.7
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.5e-11 73.2 62 66.1
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.5e-11 73.2 62 66.1
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.5e-11 73.2 115 43.5
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 2.0e-11 72.8 59 59.3
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 2.6e-11 72.4 89 49.4
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 2.6e-11 72.4 67 58.2
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 2.6e-11 72.4 64 59.4
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 2.6e-11 72.4 82 45.1
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 3.4e-11 72.0 69 55.1
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.4e-11 71.6 87 49.4
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.4e-11 71.6 87 49.4
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 4.4e-11 71.6 53 64.2
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 4.4e-11 71.6 80 51.2
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 5.8e-11 71.2 89 47.2
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 7.5e-11 70.9 62 59.7
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 1.3e-10 70.1 126 42.1
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 4.9e-10 68.2 55 63.6
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 4.9e-10 68.2 100 46.0
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 6.4e-10 67.8 59 54.2
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.1e-09 67.0 76 55.3
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 4.1e-09 65.1 101 40.6
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 4.1e-09 65.1 62 50.0
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 5.4e-09 64.7 105 46.7
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 9.2e-09 63.9 129 37.2
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 2.1e-08 62.8 67 52.2
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-07 60.1 53 54.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-07 60.1 55 50.9
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-07 60.1 55 50.9
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.3e-07 60.1 113 38.1
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.3e-07 60.1 55 49.1
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 3.0e-07 58.9 60 46.7
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 3.0e-07 58.9 99 43.4
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 1.5e-06 56.6 119 43.7
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 2.5e-06 55.8 63 42.9


User provided reference genes

Program Settings