Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 4.3e-228 794.3 391 100.0
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-216 755.7 391 95.1
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-216 755.7 391 94.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.7e-216 755.7 391 95.1
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-207 725.3 392 92.3
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.6e-206 721.1 391 90.5
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.0e-205 719.9 391 91.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.0e-204 715.7 392 89.8
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.3e-204 714.5 392 89.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.8e-203 711.1 391 89.0
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.7e-195 686.0 392 87.0
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 2.2e-195 685.6 391 87.0
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 4.1e-194 681.4 391 86.4
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 7.7e-193 677.2 391 86.2
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 8.5e-192 673.7 396 85.1
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-191 671.8 416 81.7
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 4.0e-189 664.8 378 87.3
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 4.4e-180 634.8 394 78.4
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.5e-175 619.8 391 77.0
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.5e-175 619.0 391 76.7
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.0e-172 609.4 391 76.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.4e-172 608.6 391 75.4
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.4e-172 608.6 391 76.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.2e-166 590.1 391 75.2
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-165 586.6 395 73.2
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 6.8e-165 584.3 396 74.2
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 6.8e-165 584.3 396 74.2
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 6.8e-165 584.3 396 74.2
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 3.4e-164 582.0 398 74.4
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 7.5e-164 580.9 398 74.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 3.4e-156 555.4 404 66.8
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.0e-153 546.2 404 64.9
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.5e-153 545.4 404 64.9
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.7e-152 543.1 396 65.7
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.7e-152 543.1 402 64.2
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.9e-152 542.0 404 64.4
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 8.6e-152 540.8 404 64.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.1e-151 540.4 403 63.8
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 7.3e-151 537.7 402 64.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 9.5e-151 537.3 400 64.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 9.5e-151 537.3 404 64.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 8.1e-150 534.3 404 63.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 8.1e-150 534.3 398 64.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.1e-149 533.9 402 64.2
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.8e-149 533.1 396 64.6
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.2e-148 530.4 404 62.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.5e-148 530.0 403 62.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 7.5e-148 527.7 404 65.3
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.2e-147 526.2 402 62.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.7e-147 525.4 403 62.3
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 4.9e-147 525.0 404 62.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 6.4e-147 524.6 400 62.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 6.4e-147 524.6 399 63.9
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.4e-146 523.5 406 62.1
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.4e-146 523.5 410 61.7
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 4.1e-146 521.9 404 62.1
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.1e-145 519.6 404 61.1
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.3e-144 516.9 411 61.3
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-144 516.5 400 61.5
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.3e-144 516.2 403 62.0
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 5.1e-144 515.0 402 60.7
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 5.1e-144 515.0 402 62.4
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.5e-143 513.5 404 62.1
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.5e-143 512.7 402 60.2
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.5e-143 512.7 402 60.4
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 4.3e-143 511.9 402 61.9
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 4.3e-143 511.9 401 61.6
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.3e-143 511.1 402 60.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.3e-143 511.1 402 60.9
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-142 510.4 411 60.3
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 6.2e-142 508.1 401 60.1
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 8.1e-142 507.7 406 60.6
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.1e-141 507.3 404 60.9
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.4e-141 506.9 406 60.6
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.8e-141 506.5 400 59.2
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.1e-141 505.8 407 60.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 6.8e-141 504.6 402 60.7
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.9e-141 504.2 404 60.6
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.0e-140 503.1 394 62.4
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.4e-140 502.3 407 61.4
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 4.4e-140 501.9 399 60.2
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.8e-140 501.5 386 61.4
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.7e-139 498.8 392 60.5
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.4e-138 496.9 407 60.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 5.4e-138 495.0 398 60.3
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.0e-137 491.5 286 82.5
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.0e-136 490.7 396 60.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.9e-136 488.8 406 58.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.9e-136 488.8 406 58.9
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.5e-135 486.9 401 58.4
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 3.3e-135 485.7 400 59.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.3e-135 485.7 392 58.9
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 4.3e-135 485.3 350 65.1
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 5.6e-135 485.0 433 56.4
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.7e-134 481.9 409 57.9
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 8.1e-134 481.1 407 58.2
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-133 480.3 393 57.3
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.4e-133 480.3 404 58.7
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.8e-133 479.9 434 55.8
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.8e-133 479.9 415 58.3
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 3.1e-133 479.2 472 53.4
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.8e-133 478.0 403 58.8
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.0e-132 476.5 398 59.0
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.0e-132 476.5 433 55.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.6e-132 476.1 404 56.4
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 4.4e-132 475.3 433 55.4
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.8e-132 474.9 400 59.2
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.9e-131 472.6 404 58.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.8e-131 472.2 403 57.3
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 8.4e-131 471.1 399 58.4
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.9e-130 469.9 399 57.1
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.9e-130 469.9 413 57.1
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.2e-130 468.8 429 55.0
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.4e-130 468.4 389 58.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 5.4e-130 468.4 414 57.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.1e-130 468.0 414 57.5
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 7.1e-130 468.0 450 54.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 7.1e-130 468.0 395 58.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.1e-129 466.5 418 56.0
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.5e-129 465.7 390 57.4
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.8e-129 464.5 411 57.4
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-127 460.7 400 57.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.3e-127 459.1 402 56.0
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.3e-127 459.1 410 57.1
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.8e-125 453.4 407 56.5
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.6e-124 449.5 400 57.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.8e-123 445.7 402 55.0
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 4.2e-122 442.2 397 55.7
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 5.4e-122 441.8 409 56.2
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.2e-121 440.7 390 55.6
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.2e-121 440.7 392 55.1
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.6e-121 440.3 644 40.4
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.7e-121 439.5 413 54.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 6.0e-121 438.3 394 55.1
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 2.5e-119 433.0 414 52.7
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.8e-117 426.8 475 48.4
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.8e-115 419.1 378 53.7
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.2e-114 416.0 396 51.8
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.7e-113 412.9 317 61.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.0e-112 411.0 394 52.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 5.1e-112 408.7 526 42.8
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 7.4e-111 404.8 401 51.9
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.6e-108 396.4 289 63.3
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.8e-108 395.2 287 63.4
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 2.1e-105 386.7 290 63.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 5.1e-104 382.1 366 54.4
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 7.4e-103 378.3 207 88.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 1.4e-77 294.3 266 53.8
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.5e-74 283.5 218 64.7
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 9.1e-69 265.0 248 54.0
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 5.4e-61 239.2 311 43.7
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.2e-59 233.8 193 59.6
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.9e-58 230.7 166 66.9
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.8e-53 214.2 218 50.0
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 4.1e-53 213.0 257 44.7
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-52 211.1 126 83.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.6e-52 211.1 460 33.9
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 2.6e-47 193.7 270 40.0
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.3e-43 180.6 413 35.1
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 8.0e-41 172.2 179 53.6
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.6e-36 157.9 307 36.5
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.5e-31 141.4 286 33.2
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 6.0e-28 129.4 626 23.8
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 8.1e-25 119.0 117 51.3
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-24 118.2 121 51.2
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.2e-23 115.2 78 61.5
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.6e-23 112.5 105 54.3
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.6e-17 93.6 97 49.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 1.4e-13 81.6 339 26.0
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.1e-13 79.3 83 49.4
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.8e-09 67.4 47 66.0
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-08 64.7 45 64.4
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 3.8e-06 57.0 78 41.0


User provided reference genes

Program Settings