Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 4.7e-55 217.6 110 100.0
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 2.3e-54 215.3 110 99.1
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 4.0e-54 214.5 110 98.2
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 4.0e-54 214.5 110 98.2
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 4.0e-54 214.5 110 98.2
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 6.8e-54 213.8 110 97.3
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 8.9e-54 213.4 110 98.2
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 8.9e-54 213.4 110 97.3
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 8.9e-54 213.4 110 98.2
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 8.9e-54 213.4 110 98.2
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.0e-53 212.2 110 97.3
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 2.0e-53 212.2 110 97.3
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 3.4e-53 211.5 110 97.3
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 7.5e-53 210.3 110 96.4
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 9.8e-53 209.9 110 96.4
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 9.8e-53 209.9 110 96.4
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 4.9e-52 207.6 110 95.5
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.1e-51 206.5 110 95.5
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.7e-33 146.0 106 69.8
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 9.5e-32 140.2 116 60.3
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 3.6e-31 138.3 106 65.1
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.7e-28 129.4 109 58.7
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.7e-28 129.4 109 58.7
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.7e-28 129.4 107 57.9
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.2e-28 129.0 110 55.5
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.9e-28 128.6 110 56.4
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 3.7e-28 128.3 110 57.3
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 4.9e-28 127.9 110 56.4
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 4.9e-28 127.9 109 57.8
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 4.9e-28 127.9 109 57.8
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.1e-27 126.7 101 59.4
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.9e-27 125.9 101 60.4
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 1.9e-27 125.9 101 61.4
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 5.4e-27 124.4 110 56.4
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 7.1e-27 124.0 102 60.8
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 7.1e-27 124.0 101 60.4
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 9.2e-27 123.6 101 58.4
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 2.1e-26 122.5 106 56.6
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 3.5e-26 121.7 101 58.4
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 4.6e-26 121.3 101 60.4
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 4.6e-26 121.3 107 55.1
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 6.0e-26 120.9 101 59.4
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 6.0e-26 120.9 101 57.4
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 7.8e-26 120.6 108 55.6
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 7.8e-26 120.6 106 55.7
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.0e-25 120.2 101 58.4
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 1.3e-25 119.8 101 55.4
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 3.0e-25 118.6 94 62.8
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 3.0e-25 118.6 94 62.8
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 3.0e-25 118.6 101 57.4
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 3.9e-25 118.2 101 58.4
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.1e-25 117.9 101 57.4
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 5.1e-25 117.9 111 54.1
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.1e-25 117.9 104 54.8
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 8.6e-25 117.1 101 55.4
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 8.6e-25 117.1 101 55.4
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 1.1e-24 116.7 111 55.0
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 1.5e-24 116.3 101 55.4
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.5e-24 116.3 111 53.2
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.5e-24 116.3 101 57.4
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.9e-24 115.9 101 57.4
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.3e-24 115.2 107 56.1
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 5.6e-24 114.4 110 53.6
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 5.6e-24 114.4 102 55.9
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 7.3e-24 114.0 103 54.4
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 7.3e-24 114.0 111 50.5
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 9.5e-24 113.6 101 51.5
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.2e-23 113.2 111 54.1
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.2e-23 113.2 110 49.1
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.6e-23 112.8 93 57.0
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.6e-23 112.8 111 52.3
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 2.1e-23 112.5 108 53.7
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 2.1e-23 112.5 102 52.0
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 6.2e-23 110.9 124 46.8
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 6.2e-23 110.9 111 52.3
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.4e-22 109.8 106 51.9
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.4e-22 109.8 102 54.9
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.4e-22 109.0 111 49.5
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 3.1e-22 108.6 110 50.0
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 3.1e-22 108.6 106 51.9
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 4.0e-22 108.2 93 55.9
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 5.2e-22 107.8 108 54.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 2.0e-21 105.9 103 56.3
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.6e-21 105.5 111 50.5
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 3.4e-21 105.1 102 54.9
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 7.6e-21 104.0 101 50.5
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.3e-20 103.2 101 52.5
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.2e-20 102.4 102 50.0
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 4.9e-20 101.3 101 51.5
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 8.4e-20 100.5 101 49.5
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.1e-19 100.1 101 51.5
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.4e-19 99.8 101 50.5
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 2.4e-19 99.0 101 48.5
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 4.1e-19 98.2 101 47.5
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 9.2e-19 97.1 78 60.3
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 3.5e-18 95.1 94 51.1
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 7.8e-18 94.0 113 48.7
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.0e-17 93.6 106 42.5
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 1.0e-17 93.6 69 65.2
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.3e-17 92.4 94 52.1
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 6.6e-17 90.9 76 59.2
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 6.9e-14 80.9 109 46.8
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 9.0e-14 80.5 118 40.7
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 9.0e-14 80.5 118 40.7
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-10 68.2 91 42.9
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 4.6e-10 68.2 63 50.8
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 3.9e-09 65.1 94 41.5
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 8.7e-09 63.9 45 68.9
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 1.1e-08 63.5 104 38.5
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-08 62.0 113 36.3
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-08 61.6 111 37.8
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-08 61.6 117 37.6
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-08 61.2 118 29.7
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 7.3e-08 60.8 116 37.1
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 7.3e-08 60.8 116 37.1
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.3e-08 60.8 97 35.1
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.6e-07 59.7 100 33.0
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-07 59.3 103 35.9
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-07 58.9 117 33.3
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.6e-07 58.5 93 33.3
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 6.9e-06 54.3 123 30.9
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 9.0e-06 53.9 111 33.3


User provided reference genes

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