Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 5.8e-300 1033.5 532 100.0
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.9e-218 762.7 562 73.5
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 2.5e-218 762.3 561 74.2
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 2.5e-218 762.3 561 74.2
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.2e-217 760.0 562 73.3
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 3.3e-215 751.9 586 70.5
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 9.1e-213 743.8 556 75.9
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 8.0e-209 730.7 556 74.8
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.0e-208 730.3 556 74.8
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 3.0e-208 728.8 556 74.6
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 8.8e-208 727.2 556 74.5
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 4.4e-207 724.9 556 74.3
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 9.1e-205 717.2 555 73.3
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 1.6e-204 716.5 556 73.0
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 1.1e-197 693.7 555 69.4
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 3.1e-197 692.2 556 68.9
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 4.5e-196 688.3 555 68.3
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 2.3e-187 659.4 554 63.7
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 8.0e-185 651.0 556 68.9
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 1.6e-180 636.7 519 68.0
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 2.1e-161 573.2 554 58.1
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 2.4e-160 569.7 554 61.4
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 4.4e-159 565.5 553 60.4
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 4.4e-159 565.5 553 60.4
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.7e-158 563.5 553 57.1
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 8.4e-158 561.2 554 57.6
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.1e-157 560.8 554 57.0
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 5.4e-157 558.5 578 55.9
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 1.2e-156 557.4 549 56.8
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 4.6e-156 555.4 553 56.4
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 7.8e-156 554.7 552 56.3
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 1.0e-155 554.3 557 56.7
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.3e-155 553.1 558 56.5
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 2.3e-155 553.1 558 56.5
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 2.3e-155 553.1 553 57.3
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 2.3e-155 553.1 554 56.9
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 8.7e-155 551.2 554 56.3
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.3e-154 549.3 558 57.0
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 4.3e-154 548.9 554 59.4
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.6e-153 547.0 568 56.2
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.8e-153 546.2 554 55.6
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 4.8e-153 545.4 551 56.3
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 6.2e-153 545.0 557 55.5
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 8.1e-153 544.7 559 55.6
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.8e-152 543.5 556 58.8
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 4.0e-152 542.3 554 56.0
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 5.3e-152 542.0 556 58.6
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 9.0e-152 541.2 554 54.9
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 9.0e-152 541.2 555 55.7
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 9.0e-152 541.2 555 55.5
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 2.0e-151 540.0 550 56.0
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 2.6e-151 539.7 552 57.8
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 1.7e-150 537.0 550 53.8
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 2.9e-150 536.2 568 56.0
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.4e-149 533.1 555 56.2
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 3.2e-149 532.7 553 55.2
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 3.2e-149 532.7 556 56.3
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 3.2e-149 532.7 562 56.4
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 3.2e-149 532.7 553 55.7
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 7.1e-149 531.6 553 55.2
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.1e-149 531.6 627 50.9
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 9.3e-149 531.2 551 54.8
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.2e-148 530.8 556 54.1
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 3.5e-148 529.3 569 54.8
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 3.5e-148 529.3 555 56.9
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 5.1e-147 525.4 556 56.8
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 6.6e-147 525.0 553 54.1
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 8.7e-147 524.6 553 52.8
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.1e-146 524.2 440 64.3
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.1e-146 524.2 584 52.1
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.5e-146 523.9 553 54.1
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.5e-146 523.9 554 56.0
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 2.5e-146 523.1 553 52.8
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 2.5e-146 523.1 553 53.0
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.3e-146 522.7 554 53.2
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 3.3e-146 522.7 556 52.9
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 3.3e-146 522.7 554 53.6
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 5.6e-146 521.9 584 51.9
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 2.1e-145 520.0 558 52.5
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 6.2e-145 518.5 557 53.3
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 8.1e-145 518.1 557 53.3
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 2.4e-144 516.5 555 52.8
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 3.1e-144 516.2 522 56.5
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 5.3e-144 515.4 555 53.2
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 4.5e-143 512.3 554 52.3
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.3e-142 510.8 555 53.2
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.2e-141 505.8 602 52.2
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 4.6e-140 502.3 547 51.4
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.1e-137 493.4 514 54.1
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 2.1e-137 493.4 553 52.6
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 5.3e-136 488.8 557 53.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 9.0e-136 488.0 552 49.3
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 2.6e-135 486.5 555 51.9
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 3.4e-135 486.1 555 50.3
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 5.0e-126 455.7 548 46.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 3.5e-124 449.5 549 45.2
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 5.1e-123 445.7 438 56.2
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.5e-122 444.1 418 56.5
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.7e-121 439.5 551 47.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 5.9e-119 432.2 515 50.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.7e-118 430.6 548 45.1
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 6.7e-115 418.7 545 45.1
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.7e-113 412.9 880 35.6
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 8.2e-105 385.2 544 41.0
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 3.6e-100 369.8 404 54.0
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 3.6e-100 369.8 699 36.5
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.3e-97 361.3 551 42.5
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 1.4e-88 331.3 400 46.0
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 5.0e-86 322.8 573 37.5
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.5e-85 321.2 546 35.5
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.7e-81 307.8 278 61.5
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 2.0e-74 284.3 305 55.4
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 3.3e-69 266.9 422 41.0
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 2.1e-68 264.2 261 57.5
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 9.2e-64 248.8 490 33.7
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-63 247.7 413 42.9
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 8.6e-54 215.7 175 67.4
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.5e-53 214.9 334 46.7
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 3.3e-53 213.8 141 77.3
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 2.1e-47 194.5 296 41.6
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.5e-47 193.7 269 44.6
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 2.3e-46 191.0 259 42.5
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.3e-41 175.3 212 50.9
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 2.9e-41 174.1 613 28.9
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 7.8e-39 166.0 222 41.9
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-37 160.6 188 49.5
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.3e-37 160.2 331 37.2
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 7.3e-37 159.5 115 67.8
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.3e-28 132.1 170 44.1
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.8e-27 128.3 111 63.1
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 9.0e-27 125.9 102 57.8
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 4.5e-26 123.6 116 58.6
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 6.4e-25 119.8 108 60.2
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 5.5e-24 116.7 205 39.0
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-22 112.1 104 56.7
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 1.9e-21 108.2 138 47.8
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 1.1e-19 102.4 110 50.9
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 9.0e-19 99.4 70 70.0
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 2.6e-18 97.8 215 32.1
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 1.0e-17 95.9 95 54.7
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.9e-17 94.4 84 59.5
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.9e-17 94.4 84 59.5
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.9e-17 94.4 84 59.5
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.9e-17 94.4 84 59.5
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 8.4e-17 92.8 100 53.0
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 4.2e-16 90.5 70 64.3
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 4.2e-16 90.5 57 68.4
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 5.5e-16 90.1 195 35.9
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 9.3e-16 89.4 56 67.9
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 9.3e-16 89.4 57 66.7
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.6e-15 88.6 101 49.5
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 4.6e-15 87.0 77 58.4
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 6.0e-15 86.7 77 58.4
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 3.9e-14 84.0 54 68.5
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 3.9e-14 84.0 51 76.5
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 8.7e-14 82.8 94 46.8
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 1.1e-13 82.4 76 56.6
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-13 80.9 98 45.9
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 2.1e-12 78.2 106 45.3
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 6.3e-12 76.6 58 56.9
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.4e-11 75.5 50 70.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.4e-11 75.5 50 70.0
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 9.0e-11 72.8 62 58.1
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 4.5e-10 70.5 63 55.6
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 4.5e-10 70.5 62 58.1
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 5.9e-10 70.1 76 51.3
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 1.0e-09 69.3 45 66.7
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 3.8e-09 67.4 99 51.5
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-07 62.4 93 59.1
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-07 62.4 93 59.1
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-07 62.4 93 59.1
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-07 61.6 60 53.3
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 7.9e-07 59.7 98 40.8
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 7.9e-07 59.7 35 74.3
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-06 59.3 33 81.8
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.3e-06 58.2 59 52.5
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 3.9e-06 57.4 101 39.6
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 6.7e-06 56.6 59 50.8


User provided reference genes

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