Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-192 676.4 350 100.0
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 6.3e-162 574.3 350 87.7
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 6.3e-162 574.3 350 87.7
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 6.3e-162 574.3 350 87.7
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.2e-160 570.1 350 86.9
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.2e-160 570.1 350 86.9
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.5e-62 244.2 504 38.5
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 4.5e-59 232.6 473 38.5
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.5e-59 232.6 401 41.4
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.1e-57 228.0 504 37.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 9.4e-57 224.9 483 36.2
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-55 221.1 468 37.6
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 3.3e-54 216.5 489 35.6
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 3.3e-54 216.5 489 35.6
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.3e-54 216.5 489 35.6
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 5.7e-54 215.7 487 35.5
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 7.4e-54 215.3 488 35.2
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.2e-53 213.8 486 36.2
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.4e-52 210.3 489 34.2
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 5.7e-46 189.1 492 32.1
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 3.5e-43 179.9 476 33.0
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.5e-43 179.5 464 33.0
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.0e-38 164.1 500 30.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.2e-22 111.7 509 25.5
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 2.0e-22 110.9 480 25.6
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 5.7e-22 109.4 268 29.9
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.3e-21 108.2 258 32.6
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 4.8e-21 106.3 255 29.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 6.3e-21 105.9 254 29.9
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 6.3e-21 105.9 508 25.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 8.3e-21 105.5 489 24.9
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 8.3e-21 105.5 507 24.3
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.1e-20 105.1 507 24.5
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.8e-20 104.4 257 30.4
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.1e-20 103.6 488 25.4
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 5.4e-20 102.8 500 24.6
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 9.1e-20 102.1 480 26.0
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 9.1e-20 102.1 480 26.0
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 9.1e-20 102.1 505 25.1
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.0e-19 100.9 255 29.8
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.0e-19 100.9 255 31.0
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 2.7e-19 100.5 262 27.5
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 5.9e-19 99.4 255 30.6
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 7.7e-19 99.0 323 27.9
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 7.7e-19 99.0 272 30.1
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.0e-18 98.6 273 28.9
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.3e-18 98.2 500 24.0
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 3.8e-18 96.7 257 28.4
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 5.0e-18 96.3 154 36.4
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 6.6e-18 95.9 272 30.1
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 6.6e-18 95.9 272 27.9
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.1e-17 95.1 272 27.9
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-17 95.1 256 29.7
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.1e-17 95.1 267 28.8
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.5e-17 94.7 286 30.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.5e-17 94.7 499 24.6
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.5e-17 94.7 272 29.8
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.9e-17 94.4 266 26.3
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.9e-17 94.4 273 29.7
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.5e-17 94.0 152 37.5
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.5e-17 94.0 268 27.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.2e-17 93.2 166 34.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 5.5e-17 92.8 268 27.6
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.5e-17 92.8 268 27.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 5.5e-17 92.8 462 25.1
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 5.5e-17 92.8 498 24.5
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 5.5e-17 92.8 265 28.3
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.2e-17 92.4 439 26.0
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 7.2e-17 92.4 495 24.8
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 9.5e-17 92.0 285 26.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 9.5e-17 92.0 327 26.3
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.6e-16 91.3 253 27.7
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.6e-16 91.3 485 23.3
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.6e-16 91.3 451 23.7
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.1e-16 90.9 231 30.3
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.8e-16 90.5 273 28.6
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.6e-16 90.1 268 28.0
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 4.7e-16 89.7 459 23.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 4.7e-16 89.7 248 27.8
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 4.7e-16 89.7 314 25.5
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.7e-16 89.7 266 28.2
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 6.1e-16 89.4 268 26.5
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.1e-16 89.4 259 28.6
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 6.1e-16 89.4 161 32.3
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 8.0e-16 89.0 464 23.7
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 8.0e-16 89.0 272 28.3
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.0e-15 88.6 299 28.8
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.0e-15 88.6 261 27.6
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.4e-15 88.2 269 27.1
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.4e-15 88.2 258 26.7
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.8e-15 87.8 153 35.9
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.3e-15 87.4 268 27.6
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.3e-15 87.4 256 28.5
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 3.0e-15 87.0 472 24.4
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.0e-15 87.0 509 22.8
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.0e-15 86.7 268 26.1
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 4.0e-15 86.7 148 33.1
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 5.2e-15 86.3 205 29.8
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 6.8e-15 85.9 249 25.3
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 6.8e-15 85.9 261 28.4
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 8.9e-15 85.5 283 27.6
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.6e-14 84.0 203 30.0
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 3.4e-14 83.6 267 25.8
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 5.7e-14 82.8 253 26.9
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.3e-13 81.6 258 26.7
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.3e-13 81.6 266 26.7
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.2e-13 80.9 150 32.0
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.8e-13 80.5 319 23.2
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 8.3e-13 79.0 448 21.7
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.1e-12 78.6 495 22.6
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.1e-12 78.6 446 23.5
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.4e-12 77.4 251 27.5
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 4.1e-12 76.6 438 23.3
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.7e-11 73.9 293 25.9
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.8e-11 72.4 451 23.5
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.0e-10 72.0 498 21.9
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 8.6e-10 68.9 515 23.1
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 7.3e-09 65.9 104 41.3
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 2.8e-08 63.9 88 46.6
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.4e-07 61.6 162 29.6
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.8e-07 61.2 114 40.4
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 4.0e-07 60.1 116 38.8
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 6.8e-07 59.3 170 27.6
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 6.8e-07 59.3 128 38.3
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 8.9e-07 58.9 149 31.5
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.2e-06 58.5 170 27.1
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-06 56.2 159 27.0
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 9.8e-06 55.5 75 46.7


User provided reference genes

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