Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07433 Brassica carinata HOM05D000933 ORTHO05D000820 8.8e-31 136.3 70 100.0
BcaB08g35812 Brassica carinata HOM05D000933 ORTHO05D090744 3.4e-27 124.4 73 90.4
A01p13820 Brassica napus HOM05D000933 ORTHO05D000820 1.1e-25 119.4 63 96.8
BraA01t01328Z Brassica rapa HOM05D000933 ORTHO05D000820 1.1e-25 119.4 63 96.8
BcaB02g08743 Brassica carinata HOM05D000933 ORTHO05D000820 3.2e-25 117.9 63 96.8
BcaC09g51123 Brassica carinata HOM05D000933 ORTHO05D000820 4.2e-25 117.5 63 95.2
C01p16850 Brassica napus HOM05D000933 ORTHO05D000820 9.4e-25 116.3 63 93.7
BolC1t01626H Brassica oleracea HOM05D000933 ORTHO05D000820 9.4e-25 116.3 63 93.7
Sp7g20570 Schrenkiella parvula HOM05D000933 ORTHO05D000820 8.8e-23 109.8 74 82.4
BcaB03g11733 Brassica carinata HOM05D000933 ORTHO05D000820 1.5e-22 109.0 74 82.4
AT4G22540 Arabidopsis thaliana HOM05D000933 ORTHO05D000820 9.7e-22 106.3 65 87.7
Thhalv10024514m.g Eutrema salsugineum HOM05D000933 ORTHO05D000820 1.7e-21 105.5 74 79.7
CARHR229430 Cardamine hirsuta HOM05D000933 ORTHO05D000820 2.2e-21 105.1 74 78.4
Carub.0007s1877 Capsella rubella HOM05D000933 ORTHO05D000820 1.1e-20 102.8 65 84.6
BcaC01g00781 Brassica carinata HOM05D000933 ORTHO05D000820 5.3e-20 100.5 74 77.0
AL7G31070 Arabidopsis lyrata HOM05D000933 ORTHO05D000820 6.9e-20 100.1 65 83.1
Aa31LG6G4550 Aethionema arabicum HOM05D000933 ORTHO05D000820 9.1e-20 99.8 74 74.3
C03p84230 Brassica napus HOM05D000933 ORTHO05D000820 1.5e-19 99.0 74 75.7
BolC3t20702H Brassica oleracea HOM05D000933 ORTHO05D000820 1.5e-19 99.0 74 75.7
A08p15790 Brassica napus HOM05D000933 ORTHO05D000820 3.4e-19 97.8 74 74.3
BraA08t33557Z Brassica rapa HOM05D000933 ORTHO05D000820 3.4e-19 97.8 74 74.3
AT4G12460 Arabidopsis thaliana HOM05D000933 ORTHO05D000820 1.6e-16 89.0 74 70.3
THA.LOC104813675 Tarenaya hassleriana HOM05D000933 ORTHO05D000820 2.1e-16 88.6 74 67.6
AL6G47340 Arabidopsis lyrata HOM05D000933 ORTHO05D000820 3.6e-16 87.8 74 68.9
THA.LOC104806338 Tarenaya hassleriana HOM05D000933 ORTHO05D000820 6.1e-16 87.0 74 67.6
BcaC02g11252 Brassica carinata HOM05D000933 ORTHO05D000820 1.0e-15 86.3 74 67.6
BcaC01g04591 Brassica carinata HOM05D000933 ORTHO05D000820 1.4e-15 85.9 74 67.6
C03p35960 Brassica napus HOM05D000933 ORTHO05D000820 1.4e-15 85.9 74 67.6
BolC3t15905H Brassica oleracea HOM05D000933 ORTHO05D000820 1.4e-15 85.9 74 67.6
BcaB01g02641 Brassica carinata HOM05D000933 ORTHO05D000820 3.0e-15 84.7 68 69.1
Thhalv10028479m.g Eutrema salsugineum HOM05D000933 ORTHO05D000820 3.9e-15 84.3 74 66.2
A03p29700 Brassica napus HOM05D000933 ORTHO05D000820 5.2e-15 84.0 74 66.2
BraA03t12164Z Brassica rapa HOM05D000933 ORTHO05D000820 5.2e-15 84.0 74 66.2
Ca_25933_v3 Cicer arietinum L. HOM05D000933 ORTHO05D000820 5.2e-15 84.0 73 61.6
Ca_30150_v3 Cicer arietinum L. HOM05D000933 ORTHO05D000820 5.2e-15 84.0 73 61.6
Atru.chr9.1344 Acer truncatum HOM05D000933 ORTHO05D000820 1.1e-14 82.8 74 62.2
CARHR253740 Cardamine hirsuta HOM05D000933 ORTHO05D000820 1.5e-14 82.4 68 67.6
Potri.001G121700 Populus trichocarpa HOM05D000933 ORTHO05D000820 3.3e-14 81.3 74 62.2
QL12p012994 Quercus lobata HOM05D000933 ORTHO05D000820 7.4e-14 80.1 74 60.8
Sp6g05090 Schrenkiella parvula HOM05D000933 ORTHO05D000820 9.7e-14 79.7 74 63.5
Actinidia05195 Actinidia chinensis HOM05D000933 ORTHO05D000820 1.3e-13 79.3 74 60.8
COL.COLO4_03563 Corchorus olitorius HOM05D000933 ORTHO05D000820 1.3e-13 79.3 74 59.5
Potri.003G111600 Populus trichocarpa HOM05D000933 ORTHO05D000820 1.3e-13 79.3 74 60.8
RcHm_v2.0_Chr7g0202721 Rosa chinensis HOM05D000933 ORTHO05D000820 1.3e-13 79.3 73 61.6
Duzib084G1293 Durio zibethinus HOM05D000933 ORTHO05D000820 1.7e-13 79.0 74 59.5
Psat4g072080 Pisum sativum HOM05D000933 ORTHO05D000820 1.7e-13 79.0 72 58.3
Thecc.03G255300 Theobroma cacao HOM05D000933 ORTHO05D000820 1.7e-13 79.0 74 58.1
Glyma.01G210600 Glycine max HOM05D000933 ORTHO05D000820 2.2e-13 78.6 72 62.5
Haze_07871 Corylus avellana HOM05D000933 ORTHO05D000820 2.8e-13 78.2 74 59.5
Duzib068G1446 Durio zibethinus HOM05D000933 ORTHO05D000820 2.8e-13 78.2 74 58.1
Lj2C214T1 Lonicera japonica HOM05D000933 ORTHO05D000820 2.8e-13 78.2 74 59.5
Peaxi162Scf00002g00107 Petunia axillaris HOM05D000933 ORTHO05D000820 2.8e-13 78.2 74 60.8
Sabra01G0093800 Salix brachista HOM05D000933 ORTHO05D000820 2.8e-13 78.2 74 60.8
Carub.0006s3162 Capsella rubella HOM05D000933 ORTHO05D000820 3.7e-13 77.8 74 60.8
CAN.G1217.7 Capsicum annuum HOM05D000933 ORTHO05D000820 3.7e-13 77.8 73 60.3
Duzib205G1561 Durio zibethinus HOM05D000933 ORTHO05D000820 3.7e-13 77.8 74 58.1
Nitab4.5_0000312g0390 Nicotiana tabacum HOM05D000933 ORTHO05D000820 3.7e-13 77.8 73 60.3
VMungo1215G0831 Vigna mungo HOM05D000933 ORTHO05D000820 3.7e-13 77.8 73 60.3
GSVIVG01001290001 Vitis vinifera HOM05D000933 ORTHO05D000820 3.7e-13 77.8 73 60.3
CiPaw.12G108000 Carya illinoinensis HOM05D000933 ORTHO05D000820 4.8e-13 77.4 74 59.5
Lj4g0012769 Lotus japonicus HOM05D000933 ORTHO05D000820 4.8e-13 77.4 73 58.9
Manes.01G077700 Manihot esculenta HOM05D000933 ORTHO05D000820 4.8e-13 77.4 74 60.8
Gohir.A03G009300 Gossypium hirsutum HOM05D000933 ORTHO05D000820 6.3e-13 77.0 74 58.1
Gohir.D03G161600 Gossypium hirsutum HOM05D000933 ORTHO05D000820 6.3e-13 77.0 74 58.1
Gorai.003G170200 Gossypium raimondii HOM05D000933 ORTHO05D000820 6.3e-13 77.0 74 58.1
Lalb_Chr05g0225601 Lupinus albus HOM05D000933 ORTHO05D000820 8.2e-13 76.6 73 56.2
Medtr4g101410 Medicago truncatula HOM05D000933 ORTHO05D000820 8.2e-13 76.6 73 56.2
MD06G1062300 Malus domestica HOM05D000933 ORTHO05D000820 1.1e-12 76.3 72 58.3
Prupe.5G073700 Prunus persica HOM05D000933 ORTHO05D000820 1.1e-12 76.3 73 58.9
Sopen08g027450 Solanum pennellii HOM05D000933 ORTHO05D000820 1.1e-12 76.3 73 58.9
TWI81G0668 Tripterygium wilfordii HOM05D000933 ORTHO05D000820 1.1e-12 76.3 74 58.1
Actinidia27460 Actinidia chinensis HOM05D000933 ORTHO05D000820 1.4e-12 75.9 74 58.1
CiPaw.11G151600 Carya illinoinensis HOM05D000933 ORTHO05D000820 1.4e-12 75.9 74 56.8
Ciclev10018970m.g Citrus clementina HOM05D000933 ORTHO05D000820 1.4e-12 75.9 74 58.1
PGSC0003DMG400004746 Solanum tuberosum HOM05D000933 ORTHO05D000820 1.4e-12 75.9 73 58.9
FAN04G1382 Fragaria x ananassa HOM05D000933 ORTHO05D000820 2.4e-12 75.1 73 57.5
Glyma.11G031400 Glycine max HOM05D000933 ORTHO05D000820 2.4e-12 75.1 72 58.3
Cc08_g12810 Coffea canephora HOM05D000933 ORTHO05D000820 3.1e-12 74.7 74 56.8
Nitab4.5_0010169g0010 Nicotiana tabacum HOM05D000933 ORTHO05D000820 3.1e-12 74.7 73 57.5
Eucgr.D02035 Eucalyptus grandis HOM05D000933 ORTHO05D000820 4.1e-12 74.3 71 60.6
FvH4_5g00160 Fragaria vesca HOM05D000933 ORTHO05D000820 4.1e-12 74.3 73 58.9
FAN08G3257 Fragaria x ananassa HOM05D000933 ORTHO05D000820 4.1e-12 74.3 73 58.9
FAN13G0753 Fragaria x ananassa HOM05D000933 ORTHO05D000820 4.1e-12 74.3 73 58.9
Phvul.002G061800 Phaseolus vulgaris HOM05D000933 ORTHO05D000820 4.1e-12 74.3 73 57.5
Dinv21612 Davidia involucrata HOM05D000933 ORTHO05D000820 5.3e-12 73.9 74 58.1
TWI15G0342 Tripterygium wilfordii HOM05D000933 ORTHO05D000820 5.3e-12 73.9 74 55.4
Glyma.17G139200 Glycine max HOM05D000933 ORTHO05D000820 7.0e-12 73.6 73 53.4
PSO764G0173 Papaver somniferum HOM05D000933 ORTHO05D000820 7.0e-12 73.6 56 67.9
arahy.Tifrunner.gnm1.ann1.RU0P4R Arachis hypogaea HOM05D000933 ORTHO05D000820 9.1e-12 73.2 73 56.2
Sabra03G0077300 Salix brachista HOM05D000933 ORTHO05D000820 9.1e-12 73.2 74 56.8
VMungo0251G1347 Vigna mungo HOM05D000933 ORTHO05D000820 9.1e-12 73.2 73 54.8
FAN18G2979 Fragaria x ananassa HOM05D000933 ORTHO05D000820 1.2e-11 72.8 73 57.5
Phvul.003G218400 Phaseolus vulgaris HOM05D000933 ORTHO05D000820 1.2e-11 72.8 73 53.4
PSO832G3131 Papaver somniferum HOM05D000933 ORTHO05D000820 1.6e-11 72.4 56 66.1
Dinv39117 Davidia involucrata HOM05D000933 ORTHO05D000820 2.0e-11 72.0 74 56.8
MD04G1086100 Malus domestica HOM05D000933 ORTHO05D000820 2.0e-11 72.0 72 55.6
Oeu040220.3 Olea europaea HOM05D000933 ORTHO05D000820 2.0e-11 72.0 74 55.4
PGR031G0565 Punica granatum HOM05D000933 ORTHO05D000820 2.6e-11 71.6 75 53.3
Ah.12g056570 Amaranthus hybridus HOM05D000933 ORTHO05D000820 3.5e-11 71.2 68 54.4
CSS0031815 Camellia sinensis var. sinensis HOM05D000933 ORTHO05D000820 3.5e-11 71.2 74 56.8
Nn6g34022 Nelumbo nucifera HOM05D000933 ORTHO05D000820 3.5e-11 71.2 73 54.8
Aqoxy7G00734 Aquilegia oxysepala HOM05D000933 ORTHO05D000820 5.9e-11 70.5 74 55.4
arahy.Tifrunner.gnm1.ann1.WY8I0W Arachis hypogaea HOM05D000933 ORTHO05D000820 5.9e-11 70.5 73 54.8
DCAR_004933 Daucus carota HOM05D000933 ORTHO05D000820 5.9e-11 70.5 74 52.7
ECA233G2300 Erigeron canadensis HOM05D000933 ORTHO05D000820 5.9e-11 70.5 73 54.8
Nn1g01068 Nelumbo nucifera HOM05D000933 ORTHO05D000820 5.9e-11 70.5 73 54.8
Oeu029335.3 Olea europaea HOM05D000933 ORTHO05D000820 7.7e-11 70.1 56 66.1
Sc01g0009400 Simmondsia chinensis HOM05D000933 ORTHO05D000820 7.7e-11 70.1 66 59.1
AUR62039944 Chenopodium quinoa HOM05D000933 ORTHO05D000820 1.0e-10 69.7 74 52.7
Gohir.A09G195700 Gossypium hirsutum HOM05D000933 ORTHO05D000820 1.3e-10 69.3 70 54.3
Gorai.006G212900 Gossypium raimondii HOM05D000933 ORTHO05D000820 1.3e-10 69.3 70 54.3
TAR375G0605 Trochodendron aralioides HOM05D000933 ORTHO05D000820 1.3e-10 69.3 74 55.4
EL10Ac5g13023 Beta vulgaris HOM05D000933 ORTHO05D000820 1.7e-10 68.9 74 52.7
DCAR_008468 Daucus carota HOM05D000933 ORTHO05D000820 1.7e-10 68.9 76 52.6
DCAR_027792 Daucus carota HOM05D000933 ORTHO05D000820 1.7e-10 68.9 53 67.9
Gohir.D09G190300 Gossypium hirsutum HOM05D000933 ORTHO05D000820 1.7e-10 68.9 70 54.3
AUR62007490 Chenopodium quinoa HOM05D000933 ORTHO05D000820 2.2e-10 68.6 74 54.1
ClCG01G003910 Citrullus lanatus HOM05D000933 ORTHO05D000820 2.9e-10 68.2 74 55.4
HanXRQChr13g0394791 Helianthus annuus HOM05D000933 ORTHO05D000820 2.9e-10 68.2 73 53.4
Oeu026495.1 Olea europaea HOM05D000933 ORTHO05D000820 2.9e-10 68.2 72 55.6
vmacro14096 Vaccinium macrocarpon HOM05D000933 ORTHO05D000820 3.8e-10 67.8 74 54.1
Sed0006137 Sechium edule HOM05D000933 ORTHO05D000820 5.0e-10 67.4 74 54.1
MSTRG.13780 Avicennia marina HOM05D000933 ORTHO05D000820 6.5e-10 67.0 74 51.4
HanXRQChr02g0049511 Helianthus annuus HOM05D000933 ORTHO05D000820 1.1e-09 66.2 55 61.8
HanXRQChr17g0549971 Helianthus annuus HOM05D000933 ORTHO05D000820 1.1e-09 66.2 72 52.8
Hund11585 Selenicereus undatus HOM05D000933 ORTHO05D000820 1.1e-09 66.2 73 53.4
HanXRQChr06g0164261 Helianthus annuus HOM05D000933 ORTHO05D000820 1.9e-09 65.5 52 65.4
Lsat_1_v5_gn_6_2800 Lactuca sativa HOM05D000933 ORTHO05D000820 1.9e-09 65.5 73 52.1
SalBow1G0541 Salvia bowleyana HOM05D000933 ORTHO05D000820 4.2e-09 64.3 54 63.0
SalBow1G4689 Salvia bowleyana HOM05D000933 ORTHO05D000820 4.2e-09 64.3 54 63.0
Solyc08g078960.4 Solanum lycopersicum HOM05D000933 ORTHO05D000820 5.5e-09 63.9 61 60.7
CANSAT21G1177 Cannabis sativa HOM05D000933 ORTHO05D000820 7.2e-09 63.5 74 51.4
TWI60G0195 Tripterygium wilfordii HOM05D000933 ORTHO05D000820 7.2e-09 63.5 74 48.6
ClCG10G002920 Citrullus lanatus HOM05D000933 ORTHO05D000820 9.4e-09 63.2 55 56.4
CsaV3_3G002980 Cucumis sativus L. HOM05D000933 ORTHO05D000820 9.4e-09 63.2 55 56.4
Migut.E00852 Erythranthe guttata HOM05D000933 ORTHO05D000820 9.4e-09 63.2 74 48.6
Migut.E01669 Erythranthe guttata HOM05D000933 ORTHO05D000820 9.4e-09 63.2 74 48.6
Lsat_1_v5_gn_3_1420 Lactuca sativa HOM05D000933 ORTHO05D000820 9.4e-09 63.2 72 50.0
MELO3C005554.2 Cucumis melo HOM05D000933 ORTHO05D000820 1.6e-08 62.4 74 51.4
Ah.02g116860 Amaranthus hybridus HOM05D000933 ORTHO05D000820 2.1e-08 62.0 87 46.0
CDE11G0320 Ceratophyllum demersum HOM05D000933 ORTHO05D000820 2.7e-08 61.6 65 50.8
Sed0020098 Sechium edule HOM05D000933 ORTHO05D000820 3.6e-08 61.2 74 48.6
TPR.G37637 Trifolium pratense HOM05D000933 ORTHO05D000820 3.6e-08 61.2 41 70.7
CSS0022267 Camellia sinensis var. sinensis HOM05D000933 ORTHO05D000820 4.7e-08 60.8 74 51.4
ATR1153G110 Amborella trichopoda HOM05D000933 ORTHO05D000820 1.0e-07 59.7 59 47.5
Glyma.05G056800 Glycine max HOM05D000933 ORTHO05D000820 1.8e-07 58.9 62 51.6
Manes.02G037200 Manihot esculenta HOM05D000933 ORTHO05D000820 1.8e-07 58.9 62 56.5
Lalb_Chr16g0379671 Lupinus albus HOM05D000933 ORTHO05D000820 3.0e-07 58.2 72 44.4
MELO3C013961.2 Cucumis melo HOM05D000933 ORTHO05D000820 6.7e-07 57.0 60 51.7
Lalb_Chr16g0389461 Lupinus albus HOM05D000933 ORTHO05D000820 8.8e-07 56.6 62 51.6
Sed0000872 Sechium edule HOM05D000933 ORTHO05D000820 2.6e-06 55.1 55 49.1
SEGI_22218 Sequoiadendron giganteum HOM05D000933 ORTHO05D000820 9.7e-06 53.1 56 42.9


User provided reference genes

Program Settings