Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07256 Brassica carinata HOM05D001038 ORTHO05D024222 1.8e-41 172.2 89 100.0
BcaC04g23074 Brassica carinata HOM05D001038 ORTHO05D019962 9.7e-27 123.2 85 72.9
BcaC08g47005 Brassica carinata HOM05D001038 ORTHO05D000395 5.9e-24 114.0 74 75.7
BcaC03g15415 Brassica carinata HOM05D001038 ORTHO05D000395 4.2e-22 107.8 74 73.0
BraA04t16796Z Brassica rapa HOM05D001038 ORTHO05D000395 2.1e-21 105.5 74 67.6
BcaB07g30174 Brassica carinata HOM05D001038 ORTHO05D000395 3.6e-21 104.8 74 68.9
BcaB01g01915 Brassica carinata HOM05D001038 ORTHO05D000395 2.3e-20 102.1 74 68.9
BcaC04g19884 Brassica carinata HOM05D001038 ORTHO05D000395 5.7e-19 97.4 73 64.4
BcaC04g20742 Brassica carinata HOM05D001038 ORTHO05D010763 7.5e-19 97.1 74 66.2
C09p39690 Brassica napus HOM05D001038 ORTHO05D000395 7.5e-19 97.1 74 66.2
BolC9t56849H Brassica oleracea HOM05D001038 ORTHO05D000395 7.5e-19 97.1 74 66.2
BcaB08g35415 Brassica carinata HOM05D001038 ORTHO05D000395 2.8e-18 95.1 73 61.6
BraA03t13820Z Brassica rapa HOM05D001038 ORTHO05D000395 2.8e-18 95.1 66 68.2
C03p74230 Brassica napus HOM05D001038 ORTHO05D000395 6.3e-18 94.0 74 63.5
C09p50150 Brassica napus HOM05D001038 ORTHO05D000395 1.4e-17 92.8 73 61.6
BolC3t19681H Brassica oleracea HOM05D001038 ORTHO05D000395 1.8e-17 92.4 74 62.2
BcaB03g12379 Brassica carinata HOM05D001038 ORTHO05D000395 3.1e-17 91.7 74 62.2
BraA05t20013Z Brassica rapa HOM05D001038 ORTHO05D000395 3.1e-17 91.7 74 62.2
BcaB03g16578 Brassica carinata HOM05D001038 ORTHO05D000395 1.6e-16 89.4 83 60.2
BcaB01g00119 Brassica carinata HOM05D001038 ORTHO05D000395 2.0e-16 89.0 74 60.8
BraA06t25413Z Brassica rapa HOM05D001038 ORTHO05D000395 5.9e-16 87.4 56 75.0
BraA02t08904Z Brassica rapa HOM05D001038 ORTHO05D000395 1.0e-15 86.7 72 59.7
BcaB04g19295 Brassica carinata HOM05D001038 ORTHO05D000395 1.3e-15 86.3 59 71.2
BcaB08g34565 Brassica carinata HOM05D001038 ORTHO05D000395 1.3e-15 86.3 74 62.2
A06p16020 Brassica napus HOM05D001038 ORTHO05D024222 1.3e-15 86.3 60 70.0
A06p36110 Brassica napus HOM05D001038 ORTHO05D024222 1.3e-15 86.3 60 70.0
BraSC36t46105Z Brassica rapa HOM05D001038 ORTHO05D000395 1.3e-15 86.3 60 70.0
BcaB01g01124 Brassica carinata HOM05D001038 ORTHO05D000395 2.3e-15 85.5 74 60.8
BcaC01g03478 Brassica carinata HOM05D001038 ORTHO05D000395 2.3e-15 85.5 59 71.2
C03p52030 Brassica napus HOM05D001038 ORTHO05D000395 2.3e-15 85.5 59 71.2
BolC3t17485H Brassica oleracea HOM05D001038 ORTHO05D000395 2.3e-15 85.5 59 71.2
BcaB06g26021 Brassica carinata HOM05D001038 ORTHO05D000395 3.8e-15 84.7 74 55.4
BcaB02g10939 Brassica carinata HOM05D001038 ORTHO05D000395 1.1e-14 83.2 54 72.2
BcaB04g18537 Brassica carinata HOM05D001038 ORTHO05D000395 1.5e-14 82.8 61 62.3
A03p30780 Brassica napus HOM05D001038 ORTHO05D000395 1.9e-14 82.4 74 58.1
BolC4t26208H Brassica oleracea HOM05D001038 ORTHO05D000395 3.3e-14 81.6 74 55.4
BraA08t34502Z Brassica rapa HOM05D001038 ORTHO05D000395 3.3e-14 81.6 69 60.9
C02p45440 Brassica napus HOM05D001038 ORTHO05D000395 4.2e-14 81.3 56 66.1
BcaC05g27733 Brassica carinata HOM05D001038 ORTHO05D000395 5.5e-14 80.9 73 54.8
BcaC09g50083 Brassica carinata HOM05D001038 ORTHO05D000395 5.5e-14 80.9 73 53.4
BNapus_Darmor_BZH_scaffold_104p00080 Brassica napus HOM05D001038 ORTHO05D000395 5.5e-14 80.9 58 69.0
BraA03t12256Z Brassica rapa HOM05D001038 ORTHO05D000395 5.5e-14 80.9 74 56.8
BcaB01g00832 Brassica carinata HOM05D001038 ORTHO05D000395 9.5e-14 80.1 73 53.4
BcaB06g26720 Brassica carinata HOM05D001038 ORTHO05D000395 9.5e-14 80.1 74 56.8
BcaB06g27965 Brassica carinata HOM05D001038 ORTHO05D000395 9.5e-14 80.1 74 56.8
A01p23200 Brassica napus HOM05D001038 ORTHO05D000395 9.5e-14 80.1 74 52.7
BcaC09g49024 Brassica carinata HOM05D001038 ORTHO05D000395 1.2e-13 79.7 54 68.5
A02p12570 Brassica napus HOM05D001038 ORTHO05D000395 1.2e-13 79.7 74 54.1
C09p45390 Brassica napus HOM05D001038 ORTHO05D024072 1.2e-13 79.7 68 61.8
A02p27290 Brassica napus HOM05D001038 ORTHO05D000395 2.1e-13 79.0 74 52.7
BolC7t43636H Brassica oleracea HOM05D001038 ORTHO05D000395 2.1e-13 79.0 74 54.1
BraA02t07755Z Brassica rapa HOM05D001038 ORTHO05D000395 2.1e-13 79.0 74 52.7
BraA09t36747Z Brassica rapa HOM05D001038 ORTHO05D000395 2.1e-13 79.0 74 54.1
BcaB08g36368 Brassica carinata HOM05D001038 ORTHO05D000395 2.8e-13 78.6 73 52.1
C01p43390 Brassica napus HOM05D001038 ORTHO05D024222 2.8e-13 78.6 52 71.2
BcaC06g34271 Brassica carinata HOM05D001038 ORTHO05D000395 4.7e-13 77.8 74 52.7
BraA07t28816Z Brassica rapa HOM05D001038 ORTHO05D000395 4.7e-13 77.8 75 56.0
BcaC05g25823 Brassica carinata HOM05D001038 ORTHO05D014932 1.0e-12 76.6 74 52.7
A04p08060 Brassica napus HOM05D001038 ORTHO05D000395 1.0e-12 76.6 74 52.7
C05p37210 Brassica napus HOM05D001038 ORTHO05D000395 1.0e-12 76.6 51 70.6
BcaB04g17766 Brassica carinata HOM05D001038 ORTHO05D000395 1.4e-12 76.3 74 48.6
BcaNung00229 Brassica carinata HOM05D001038 ORTHO05D000395 1.4e-12 76.3 74 48.6
BcaB05g23513 Brassica carinata HOM05D001038 ORTHO05D000395 2.3e-12 75.5 57 64.9
BcaC01g02304 Brassica carinata HOM05D001038 ORTHO05D000395 2.3e-12 75.5 54 66.7
A01p24490 Brassica napus HOM05D001038 ORTHO05D021947 2.3e-12 75.5 74 51.4
C03p66800 Brassica napus HOM05D001038 ORTHO05D000395 2.3e-12 75.5 54 66.7
BolC7t40990H Brassica oleracea HOM05D001957 ORTHO05D002015 2.3e-12 75.5 74 51.4
BcaC03g17929 Brassica carinata HOM05D001038 ORTHO05D000395 3.0e-12 75.1 74 50.0
A04p11380 Brassica napus HOM05D001038 ORTHO05D000395 6.8e-12 73.9 74 52.7
C07p15560 Brassica napus HOM05D001038 ORTHO05D000395 6.8e-12 73.9 74 51.4
BraA04t16800Z Brassica rapa HOM05D001038 ORTHO05D000395 6.8e-12 73.9 74 52.7
BcaNung00468 Brassica carinata HOM05D001038 ORTHO05D000395 1.5e-11 72.8 54 64.8
BraA05t21246Z Brassica rapa HOM05D001038 ORTHO05D000395 1.5e-11 72.8 70 52.9
BcaC08g46980 Brassica carinata HOM05D001038 ORTHO05D000395 2.0e-11 72.4 70 55.7
BolC6t36138H Brassica oleracea HOM05D001038 ORTHO05D014932 2.6e-11 72.0 74 51.4
BolC7t42043H Brassica oleracea HOM05D001038 ORTHO05D000395 2.6e-11 72.0 74 50.0
BcaB07g31487 Brassica carinata HOM05D001038 ORTHO05D000395 3.4e-11 71.6 51 66.7
BcaB02g10843 Brassica carinata HOM05D001038 ORTHO05D000395 7.5e-11 70.5 74 47.3
BolC5t30492H Brassica oleracea HOM05D001038 ORTHO05D000395 7.5e-11 70.5 72 50.0
BraA06t25652Z Brassica rapa HOM05D001038 ORTHO05D000395 1.3e-10 69.7 73 43.8
BraA02t08028Z Brassica rapa HOM05D001038 ORTHO05D024222 2.2e-10 68.9 43 76.7
BcaC07g37762 Brassica carinata HOM05D001038 ORTHO05D000395 2.8e-10 68.6 54 59.3
BolC8t48147H Brassica oleracea HOM05D001038 ORTHO05D000395 2.8e-10 68.6 54 59.3
C04p37080 Brassica napus HOM05D034669 ORTHO05D000395 6.3e-10 67.4 50 66.0
C07p18280 Brassica napus HOM05D001038 ORTHO05D000395 8.3e-10 67.0 79 45.6
C04p46240 Brassica napus HOM05D001038 ORTHO05D000395 1.1e-09 66.6 46 67.4
BolC7t41409H Brassica oleracea HOM05D001038 ORTHO05D000395 1.4e-09 66.2 79 46.8
BraA06t25335Z Brassica rapa HOM05D001038 ORTHO05D000395 1.4e-09 66.2 73 42.5
BraA06t25409Z Brassica rapa HOM05D001038 ORTHO05D000395 1.4e-09 66.2 79 45.6
BolC7t42338H Brassica oleracea HOM05D001038 ORTHO05D000395 2.4e-09 65.5 79 44.3
BcaC08g43120 Brassica carinata HOM05D001038 ORTHO05D032078 3.1e-09 65.1 54 57.4
BraA05t20300Z Brassica rapa HOM05D001038 ORTHO05D000395 3.1e-09 65.1 50 64.0
BraA01t02128Z Brassica rapa HOM05D001038 ORTHO05D000395 4.1e-09 64.7 49 67.3
C07p12210 Brassica napus HOM05D001038 ORTHO05D040877 7.0e-09 63.9 79 45.6
C06p03930 Brassica napus HOM05D001038 ORTHO05D000395 9.2e-09 63.5 50 62.0
BcaC04g19622 Brassica carinata HOM05D001038 ORTHO05D000395 2.7e-08 62.0 74 44.6
BolC2t11144H Brassica oleracea HOM05D001038 ORTHO05D040877 4.5e-08 61.2 79 43.0
BolC7t41688H Brassica oleracea HOM05D001038 ORTHO05D000395 5.9e-08 60.8 79 44.3
BcaB01g01350 Brassica carinata HOM05D001038 ORTHO05D000395 7.8e-08 60.5 60 46.7
C07p13440 Brassica napus HOM05D001038 ORTHO05D016703 1.3e-07 59.7 60 45.0
BolC7t41839H Brassica oleracea HOM05D001038 ORTHO05D016703 1.3e-07 59.7 60 45.0
BcaC08g46850 Brassica carinata HOM05D001038 ORTHO05D000395 3.9e-07 58.2 56 51.8
C03p47220 Brassica napus HOM05D001038 ORTHO05D000395 5.0e-07 57.8 59 52.5
BraA05t19810Z Brassica rapa HOM05D001038 ORTHO05D016703 5.0e-07 57.8 60 43.3
C05p36690 Brassica napus HOM05D001038 ORTHO05D000395 6.6e-07 57.4 56 46.4
BolC5t33633H Brassica oleracea HOM05D001038 ORTHO05D016716 6.6e-07 57.4 56 46.4
BraA08t34217Z Brassica rapa HOM05D001038 ORTHO05D016716 6.6e-07 57.4 64 46.9
BcaB07g32736 Brassica carinata HOM05D001038 ORTHO05D024484 8.6e-07 57.0 60 46.7
A06p26760 Brassica napus HOM05D001038 ORTHO05D000395 8.6e-07 57.0 60 45.0
BolC5t32403H Brassica oleracea HOM05D001038 ORTHO05D016716 8.6e-07 57.0 64 45.3
BraA04t18197Z Brassica rapa HOM05D001038 ORTHO05D000395 8.6e-07 57.0 59 47.5
BraSC37t46126Z Brassica rapa HOM05D001038 ORTHO05D016776 1.1e-06 56.6 59 50.8
BraA06t24005Z Brassica rapa HOM05D001038 ORTHO05D000395 1.5e-06 56.2 50 48.0
A04p22180 Brassica napus HOM05D001038 ORTHO05D000395 1.9e-06 55.8 56 50.0
BraA10t43039Z Brassica rapa HOM05D001038 ORTHO05D000395 1.9e-06 55.8 56 50.0
C09p60390 Brassica napus HOM05D001038 ORTHO05D016703 4.3e-06 54.7 57 43.9
BolC8t49550H Brassica oleracea HOM05D001038 ORTHO05D000395 4.3e-06 54.7 50 54.0
BolC2t07185H Brassica oleracea HOM05D001038 ORTHO05D000395 5.6e-06 54.3 50 52.0
C06p00860 Brassica napus HOM05D001038 ORTHO05D000395 9.5e-06 53.5 54 44.4
BolC3t16968H Brassica oleracea HOM05D001038 ORTHO05D000395 9.5e-06 53.5 54 44.4


User provided reference genes

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