Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 0.0e+00 1205.7 731 100.0
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 1.2e-237 827.0 665 78.3
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 9.9e-229 797.3 669 75.8
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 9.9e-229 797.3 669 75.8
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.2e-226 790.4 660 75.3
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 2.5e-216 756.1 668 74.6
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.9e-211 740.0 795 68.9
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 6.9e-206 721.5 741 66.5
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 3.2e-203 712.6 799 65.7
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 6.3e-199 698.4 796 64.3
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.1e-198 697.6 802 63.5
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 2.2e-191 673.3 499 81.4
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 1.4e-169 600.9 672 60.0
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.7e-164 583.9 668 58.4
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.7e-148 530.8 413 68.8
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 6.4e-143 512.3 627 57.3
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 6.6e-132 475.7 741 49.8
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-125 454.5 365 82.2
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.6e-122 444.5 739 50.6
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 2.2e-79 301.2 406 53.0
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 7.0e-73 279.6 398 47.2
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.1e-70 272.3 411 47.4
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.5e-70 271.9 373 46.6
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.9e-70 271.6 681 42.3
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.2e-70 270.8 392 48.0
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 5.5e-70 270.0 397 47.1
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 7.2e-70 269.6 383 46.7
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.2e-69 268.9 380 47.6
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.2e-69 268.9 380 47.6
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 1.6e-69 268.5 394 47.0
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 1.6e-69 268.5 387 48.3
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 3.6e-69 267.3 442 49.1
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.6e-69 267.3 382 47.4
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 3.6e-69 267.3 394 46.4
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 6.1e-69 266.5 372 47.8
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 2.3e-68 264.6 408 46.1
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 2.3e-68 264.6 356 49.2
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 3.0e-68 264.2 419 45.3
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 6.7e-68 263.1 384 46.4
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 8.8e-68 262.7 296 58.1
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 8.8e-68 262.7 379 48.0
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.1e-67 262.3 384 47.4
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.1e-67 262.3 408 46.1
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 2.0e-67 261.5 437 43.0
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 2.6e-67 261.2 400 45.0
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.6e-67 261.2 387 46.3
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.6e-67 261.2 387 46.3
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 3.3e-67 260.8 334 50.6
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 4.4e-67 260.4 677 40.6
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.4e-67 260.4 422 44.3
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 5.7e-67 260.0 406 46.8
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.2e-66 258.1 424 42.9
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 3.7e-66 257.3 678 41.9
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 6.3e-66 256.5 292 52.4
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 6.3e-66 256.5 384 45.8
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 8.2e-66 256.1 392 45.9
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.1e-65 255.8 389 48.1
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 1.1e-65 255.8 342 48.8
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 1.8e-65 255.0 387 46.8
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 2.4e-65 254.6 453 42.2
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 3.1e-65 254.2 715 39.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 5.3e-65 253.4 376 47.1
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.2e-64 252.3 426 44.8
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 2.0e-64 251.5 413 45.0
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 4.5e-64 250.4 403 42.2
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 5.9e-64 250.0 443 42.4
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 5.9e-64 250.0 392 43.6
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 1.0e-63 249.2 391 44.8
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.3e-63 248.8 375 44.8
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 6.5e-63 246.5 379 45.6
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 8.5e-63 246.1 196 63.3
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 1.1e-62 245.7 196 62.8
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 1.1e-62 245.7 347 46.7
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 1.9e-62 245.0 384 45.1
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.9e-62 245.0 213 63.4
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 2.5e-62 244.6 425 44.0
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 4.2e-62 243.8 384 44.8
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 5.5e-62 243.4 388 43.6
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 7.2e-62 243.0 197 64.0
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.6e-61 241.9 319 48.9
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 1.6e-61 241.9 364 43.7
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 2.7e-61 241.1 413 41.4
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 3.6e-61 240.7 420 41.4
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 6.1e-61 240.0 410 44.4
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.4e-60 238.8 376 43.9
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 3.0e-60 237.7 181 69.6
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 6.8e-60 236.5 199 62.3
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 1.5e-59 235.3 406 43.1
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 2.0e-59 235.0 410 42.4
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 3.4e-59 234.2 170 68.8
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 9.8e-59 232.6 323 47.7
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 9.8e-59 232.6 450 40.9
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 2.8e-58 231.1 232 53.9
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 6.3e-58 229.9 441 39.9
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 8.3e-58 229.6 174 66.7
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.1e-57 229.2 374 43.9
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.4e-57 228.8 337 45.1
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.8e-57 228.4 386 43.5
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.8e-57 228.4 198 61.6
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 3.1e-57 227.6 413 43.3
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 3.1e-57 227.6 363 46.0
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 3.1e-57 227.6 438 39.5
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 5.4e-57 226.9 414 43.2
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 9.1e-57 226.1 406 43.1
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.6e-56 225.3 203 59.6
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 2.7e-56 224.6 427 41.5
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.0e-55 222.6 318 45.9
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.3e-55 222.2 444 39.9
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.7e-55 221.9 447 39.8
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 5.0e-55 220.3 394 40.9
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 7.2e-54 216.5 312 45.8
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 2.1e-53 214.9 203 85.2
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.7e-53 213.8 384 41.9
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 5.2e-52 210.3 364 41.8
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 3.4e-51 207.6 395 40.5
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 4.9e-50 203.8 168 60.7
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 6.3e-50 203.4 347 40.3
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 4.1e-49 200.7 371 41.8
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 5.4e-49 200.3 360 40.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 2.7e-48 198.0 343 41.7
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.5e-48 197.2 152 63.2
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.9e-48 196.8 182 54.4
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 7.7e-48 196.4 326 44.8
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.7e-47 195.3 388 39.7
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 2.9e-47 194.5 230 51.7
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 9.5e-46 189.5 351 38.5
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.6e-45 188.7 317 41.6
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 8.9e-44 183.0 382 37.4
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 2.0e-43 181.8 183 56.8
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 2.9e-42 177.9 183 56.3
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.0e-40 171.8 209 49.8
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.3e-39 169.1 369 40.1
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 2.3e-39 168.3 269 43.5
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 4.7e-37 160.6 136 55.1
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.8e-36 158.7 159 50.3
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 6.8e-36 156.8 139 56.8
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.2e-35 156.0 157 52.2
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 9.8e-35 152.9 352 37.2
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.2e-34 151.8 157 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.9e-33 148.7 334 36.8
BcaB08g36101 Brassica carinata HOM05D004586 ORTHO05D005266 2.5e-30 138.3 74 95.9
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 2.5e-30 138.3 267 39.0
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.2e-25 121.3 368 32.3
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 6.8e-20 103.6 96 59.4
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.1e-14 86.3 71 54.9
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 4.3e-14 84.3 71 57.7
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.2e-11 76.3 170 32.4
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 4.9e-10 70.9 149 34.2
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.1e-08 65.5 266 31.6
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.7e-07 62.4 74 44.6


User provided reference genes

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