Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06835 Brassica carinata HOM05D000896 ORTHO05D000594 2.1e-64 248.8 121 100.0
BcaC05g24358 Brassica carinata HOM05D000896 ORTHO05D000594 4.9e-37 157.9 137 62.8
C05p03980 Brassica napus HOM05D000896 ORTHO05D000594 4.9e-37 157.9 137 62.8
BolC5t29176H Brassica oleracea HOM05D000896 ORTHO05D000594 4.9e-37 157.9 137 62.8
A10p04380 Brassica napus HOM05D000896 ORTHO05D041890 7.8e-19 97.4 55 81.8
BraA10t42705Z Brassica rapa HOM05D000896 ORTHO05D041890 7.8e-19 97.4 55 81.8
CARHR005050 Cardamine hirsuta HOM05D000896 ORTHO05D000594 6.2e-16 87.8 138 38.4
AL4G15340 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.7e-13 79.7 140 37.9
THA.LOC104827391 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.1e-12 77.0 143 32.9
AL1G15520 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.9e-12 76.3 138 34.1
AT2G24670 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.9e-12 76.3 139 37.4
A09p67360 Brassica napus HOM05D000896 ORTHO05D000594 3.2e-12 75.5 137 36.5
BraA09t42067Z Brassica rapa HOM05D000896 ORTHO05D000594 3.2e-12 75.5 137 36.5
THA.LOC104827386 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.2e-12 75.5 143 31.5
THA.LOC104827387 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 3.2e-12 75.5 143 31.5
BcaC07g42126 Brassica carinata HOM05D000896 ORTHO05D000594 4.1e-12 75.1 136 35.3
C08p51670 Brassica napus HOM05D000896 ORTHO05D000594 4.1e-12 75.1 136 35.3
BolC8t52695H Brassica oleracea HOM05D000896 ORTHO05D000594 4.1e-12 75.1 136 35.3
BcaB04g18266 Brassica carinata HOM05D000896 ORTHO05D000594 5.4e-12 74.7 144 35.4
THA.LOC104824133 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.2e-11 73.6 112 34.8
THA.LOC104827678 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.2e-11 73.6 112 34.8
C08p51650 Brassica napus HOM05D000896 ORTHO05D000594 1.6e-11 73.2 150 34.0
BolC8t52693H Brassica oleracea HOM05D000896 ORTHO05D000594 1.6e-11 73.2 150 34.0
SpUn0479_0020 Schrenkiella parvula HOM05D000896 ORTHO05D000594 2.1e-11 72.8 145 35.2
BcaB06g28445 Brassica carinata HOM05D000896 ORTHO05D000594 2.7e-11 72.4 164 32.9
BcaB06g28558 Brassica carinata HOM05D000896 ORTHO05D000594 2.7e-11 72.4 165 33.9
BcaC02g07964 Brassica carinata HOM05D000896 ORTHO05D000594 6.0e-11 71.2 144 33.3
BcaC07g42125 Brassica carinata HOM05D000896 ORTHO05D000594 6.0e-11 71.2 133 36.8
Carub.0001s0495 Capsella rubella HOM05D000896 ORTHO05D000594 1.7e-10 69.7 145 31.7
C04p61400 Brassica napus HOM05D000896 ORTHO05D000594 3.0e-10 68.9 144 32.6
AL1G15890 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 3.9e-10 68.6 152 28.9
C04p17910 Brassica napus HOM05D000896 ORTHO05D032691 3.9e-10 68.6 123 37.4
BolC4t23339H Brassica oleracea HOM05D000896 ORTHO05D032691 3.9e-10 68.6 123 37.4
A04p23440 Brassica napus HOM05D000896 ORTHO05D000594 5.1e-10 68.2 157 33.8
BraA09t42065Z Brassica rapa HOM05D000896 ORTHO05D000594 5.1e-10 68.2 133 36.8
Thhalv10009984m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 5.1e-10 68.2 145 33.8
A09p67340 Brassica napus HOM05D000896 ORTHO05D000594 6.6e-10 67.8 133 36.8
BraA04t17955Z Brassica rapa HOM05D000896 ORTHO05D000594 6.6e-10 67.8 144 33.3
Aa31LG5G5500 Aethionema arabicum HOM05D000896 ORTHO05D000594 8.6e-10 67.4 144 34.7
BraA04t17973Z Brassica rapa HOM05D000896 ORTHO05D000594 8.6e-10 67.4 144 33.3
Aa31LG5G5490 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.1e-09 67.0 134 32.8
Aa31sc1610G20 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.1e-09 67.0 134 32.8
THA.LOC104826207 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.1e-09 67.0 143 28.7
Carub.0001s0530 Capsella rubella HOM05D000896 ORTHO05D000594 1.5e-09 66.6 136 33.1
AL4G26970 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.9e-09 66.2 153 31.4
C04p18170 Brassica napus HOM05D000896 ORTHO05D000594 1.9e-09 66.2 142 33.8
BolC4t23373H Brassica oleracea HOM05D000896 ORTHO05D000594 1.9e-09 66.2 142 33.8
AL4G27140 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 3.3e-09 65.5 151 31.8
Carub.0004s0407 Capsella rubella HOM05D000896 ORTHO05D000594 3.3e-09 65.5 146 30.8
AT1G05920 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.3e-09 65.1 146 32.2
BcaC02g11280 Brassica carinata HOM05D000896 ORTHO05D000594 4.3e-09 65.1 142 33.1
A04p24380 Brassica napus HOM05D000896 ORTHO05D000594 4.3e-09 65.1 144 32.6
A04p24520 Brassica napus HOM05D000896 ORTHO05D000594 4.3e-09 65.1 144 32.6
A05p13800 Brassica napus HOM05D000896 ORTHO05D000594 5.6e-09 64.7 143 34.3
C04p59750 Brassica napus HOM05D000896 ORTHO05D000594 7.3e-09 64.3 136 35.3
BolC4t27481H Brassica oleracea HOM05D000896 ORTHO05D000594 7.3e-09 64.3 136 35.3
BraA05t20317Z Brassica rapa HOM05D000896 ORTHO05D000594 7.3e-09 64.3 143 34.3
AT1G05930 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 9.5e-09 63.9 147 30.6
BcaC07g42123 Brassica carinata HOM05D000896 ORTHO05D000594 9.5e-09 63.9 124 34.7
Aa31LG1G8400 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.2e-08 63.5 132 31.8
AT2G31720 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 1.2e-08 63.5 137 35.0
A05p13690 Brassica napus HOM05D000896 ORTHO05D000594 1.2e-08 63.5 135 32.6
BraA05t20306Z Brassica rapa HOM05D000896 ORTHO05D000594 1.2e-08 63.5 135 32.6
Aa31LG1G8310 Aethionema arabicum HOM05D000896 ORTHO05D000594 1.6e-08 63.2 132 31.1
AL1G46070 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.6e-08 63.2 142 30.3
C04p61210 Brassica napus HOM05D000896 ORTHO05D000594 1.6e-08 63.2 144 31.2
C09p21870 Brassica napus HOM05D000896 ORTHO05D000594 1.6e-08 63.2 137 32.1
BolC9t55092H Brassica oleracea HOM05D000896 ORTHO05D000594 1.6e-08 63.2 137 32.1
AT1G32030 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.1e-08 62.8 143 31.5
BcaB02g10422 Brassica carinata HOM05D000896 ORTHO05D000594 2.1e-08 62.8 141 31.9
BcaC04g22224 Brassica carinata HOM05D000896 ORTHO05D000594 2.1e-08 62.8 137 32.1
BraA04t17871Z Brassica rapa HOM05D000896 ORTHO05D000594 2.1e-08 62.8 157 32.5
Thhalv10029136m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 2.1e-08 62.8 123 31.7
AT3G24850 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 2.8e-08 62.4 138 31.9
C04p60850 Brassica napus HOM05D000896 ORTHO05D000594 2.8e-08 62.4 150 32.0
BolC4t27576H Brassica oleracea HOM05D000896 ORTHO05D000594 2.8e-08 62.4 150 32.0
A09p17570 Brassica napus HOM05D000896 ORTHO05D000594 3.6e-08 62.0 137 31.4
C04p17890 Brassica napus HOM05D000896 ORTHO05D000594 3.6e-08 62.0 135 33.3
BolC4t23337H Brassica oleracea HOM05D000896 ORTHO05D000594 3.6e-08 62.0 135 33.3
BolC4t27609H Brassica oleracea HOM05D000896 ORTHO05D000594 3.6e-08 62.0 144 29.9
BraA09t37387Z Brassica rapa HOM05D000896 ORTHO05D000594 3.6e-08 62.0 137 31.4
TPR.G1176 Trifolium pratense HOM05D000896 ORTHO05D000594 3.6e-08 62.0 121 28.9
Carub.0003s2555 Capsella rubella HOM05D000896 ORTHO05D000594 4.7e-08 61.6 139 31.7
Potri.015G014700 Populus trichocarpa HOM05D000896 ORTHO05D000594 4.7e-08 61.6 137 28.5
Aa31LG1G8320 Aethionema arabicum HOM05D000896 ORTHO05D000594 6.2e-08 61.2 143 27.3
Aa31LG1G8390 Aethionema arabicum HOM05D000896 ORTHO05D000594 6.2e-08 61.2 143 27.3
AL3G40940 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 6.2e-08 61.2 138 31.2
CARHR125400 Cardamine hirsuta HOM05D000896 ORTHO05D000594 6.2e-08 61.2 140 31.4
C04p60830 Brassica napus HOM05D000896 ORTHO05D000594 8.1e-08 60.8 150 31.3
Thhalv10029259m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 8.1e-08 60.8 161 27.3
BcaB06g28569 Brassica carinata HOM05D000896 ORTHO05D000594 1.1e-07 60.5 95 36.8
Manes.09G155401 Manihot esculenta HOM05D000896 ORTHO05D000594 1.1e-07 60.5 129 32.6
THA.LOC104827390 Tarenaya hassleriana HOM05D000896 ORTHO05D000594 1.1e-07 60.5 144 24.3
BcaB06g28529 Brassica carinata HOM05D000896 ORTHO05D000594 1.4e-07 60.1 150 32.0
Carub.0322s0001 Capsella rubella HOM05D000896 ORTHO05D000594 1.4e-07 60.1 133 30.8
Gohir.D12G042950 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.4e-07 60.1 135 31.9
Potri.015G014200 Populus trichocarpa HOM05D000896 ORTHO05D000594 1.4e-07 60.1 121 28.9
CARHR005450 Cardamine hirsuta HOM05D000896 ORTHO05D000594 1.8e-07 59.7 140 28.6
BcaB02g06859 Brassica carinata HOM05D000896 ORTHO05D000594 2.3e-07 59.3 134 29.1
BcaB07g32861 Brassica carinata HOM05D000896 ORTHO05D000594 2.3e-07 59.3 146 29.5
BolC4t27574H Brassica oleracea HOM05D000896 ORTHO05D000594 2.3e-07 59.3 150 31.3
BraA04t17932Z Brassica rapa HOM05D000896 ORTHO05D000594 3.1e-07 58.9 132 33.3
Duzib138G1815 Durio zibethinus HOM05D000896 ORTHO05D000594 3.1e-07 58.9 141 30.5
Gohir.D12G043450 Gossypium hirsutum HOM05D000896 ORTHO05D000594 3.1e-07 58.9 135 31.9
Rhsim02G0210800 Rhododendron simsii HOM05D000896 ORTHO05D000594 3.1e-07 58.9 128 28.9
Aa31LG1G8430 Aethionema arabicum HOM05D000896 ORTHO05D000594 4.0e-07 58.5 143 28.0
AL3G40220 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 4.0e-07 58.5 138 31.9
AT3G49610 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 4.0e-07 58.5 144 30.6
ClCG01G006230 Citrullus lanatus HOM05D000896 ORTHO05D000594 4.0e-07 58.5 138 31.9
ECA234G4860 Erigeron canadensis HOM05D000896 ORTHO05D000594 4.0e-07 58.5 141 27.7
Thhalv10029471m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 4.0e-07 58.5 151 30.5
Gohir.A12G043480 Gossypium hirsutum HOM05D000896 ORTHO05D000594 4.0e-07 58.5 135 31.1
BcaB07g31212 Brassica carinata HOM05D000896 ORTHO05D000594 5.2e-07 58.2 137 30.7
Carub.0007s1353 Capsella rubella HOM05D000896 ORTHO05D000594 5.2e-07 58.2 139 31.7
Migut.G01089 Erythranthe guttata HOM05D000896 ORTHO05D000594 5.2e-07 58.2 126 29.4
AL3G40610 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 6.8e-07 57.8 138 30.4
BcaB01g01586 Brassica carinata HOM05D000896 ORTHO05D000594 6.8e-07 57.8 142 32.4
A04p24120 Brassica napus HOM05D000896 ORTHO05D000594 6.8e-07 57.8 132 33.3
Migut.G01061 Erythranthe guttata HOM05D000896 ORTHO05D000594 6.8e-07 57.8 126 29.4
A10p04620 Brassica napus HOM05D000896 ORTHO05D000594 8.9e-07 57.4 139 30.2
BraA10t42727Z Brassica rapa HOM05D000896 ORTHO05D000594 8.9e-07 57.4 139 30.2
Carub.0004s1274 Capsella rubella HOM05D000896 ORTHO05D000594 8.9e-07 57.4 139 28.8
Gorai.008G045700 Gossypium raimondii HOM05D000896 ORTHO05D000594 8.9e-07 57.4 135 30.4
AL1G15880 Arabidopsis lyrata HOM05D000896 ORTHO05D000594 1.2e-06 57.0 145 29.7
Rhsim02G0212200 Rhododendron simsii HOM05D000896 ORTHO05D000594 1.2e-06 57.0 120 29.2
Sp4g07360 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.2e-06 57.0 89 39.3
Sp4g14210 Schrenkiella parvula HOM05D000896 ORTHO05D000594 1.2e-06 57.0 53 50.9
Rhsim02G0210600 Rhododendron simsii HOM05D000896 ORTHO05D000594 1.5e-06 56.6 128 28.1
Carub.0004s1302 Capsella rubella HOM05D000896 ORTHO05D000594 2.0e-06 56.2 122 31.1
Migut.G01064 Erythranthe guttata HOM05D000896 ORTHO05D000594 2.0e-06 56.2 126 28.6
Migut.K01123 Erythranthe guttata HOM05D000896 ORTHO05D000594 2.0e-06 56.2 126 28.6
Gohir.A12G043560 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.0e-06 56.2 135 28.9
Gohir.A12G043720 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.0e-06 56.2 135 28.9
TPR.G12242 Trifolium pratense HOM05D000896 ORTHO05D000594 2.0e-06 56.2 132 25.8
Rhsim02G0212100 Rhododendron simsii HOM05D000896 ORTHO05D000594 2.6e-06 55.8 132 28.8
BraA10t42685Z Brassica rapa HOM05D000896 ORTHO05D000594 3.4e-06 55.5 132 29.5
BcaC02g07220 Brassica carinata HOM05D000896 ORTHO05D000594 4.4e-06 55.1 125 27.2
A09p34210 Brassica napus HOM05D000896 ORTHO05D000594 4.4e-06 55.1 126 30.2
BolC4t28489H Brassica oleracea HOM05D000896 ORTHO05D000594 4.4e-06 55.1 125 27.2
BraA09t38969Z Brassica rapa HOM05D000896 ORTHO05D000594 4.4e-06 55.1 126 30.2
Thhalv10012233m.g Eutrema salsugineum HOM05D000896 ORTHO05D000594 4.4e-06 55.1 139 30.9
Gorai.008G045100 Gossypium raimondii HOM05D000896 ORTHO05D000594 4.4e-06 55.1 124 30.6
TPR.G1144 Trifolium pratense HOM05D000896 ORTHO05D000594 4.4e-06 55.1 148 24.3
C05p04280 Brassica napus HOM05D000896 ORTHO05D000594 5.8e-06 54.7 139 29.5
BolC5t29203H Brassica oleracea HOM05D000896 ORTHO05D000594 5.8e-06 54.7 139 29.5
Carub.0004s1432 Capsella rubella HOM05D000896 ORTHO05D000594 5.8e-06 54.7 148 30.4
Sabra15G0011700 Salix brachista HOM05D000896 ORTHO05D000594 5.8e-06 54.7 121 28.1
AT5G38490 Arabidopsis thaliana HOM05D000896 ORTHO05D000594 7.6e-06 54.3 144 28.5
BcaC05g27223 Brassica carinata HOM05D000896 ORTHO05D000594 7.6e-06 54.3 126 29.4
BolC5t31856H Brassica oleracea HOM05D000896 ORTHO05D000594 7.6e-06 54.3 126 29.4
ClCG01G006250 Citrullus lanatus HOM05D000896 ORTHO05D000594 7.6e-06 54.3 138 29.7
Manes.09G146800 Manihot esculenta HOM05D000896 ORTHO05D000594 7.6e-06 54.3 128 31.2
BcaB06g28422 Brassica carinata HOM05D016978 ORTHO05D018741 9.9e-06 53.9 129 25.6
C04p69900 Brassica napus HOM05D000896 ORTHO05D000594 9.9e-06 53.9 125 27.2
Manes.14G006500 Manihot esculenta HOM05D000896 ORTHO05D000594 9.9e-06 53.9 133 27.1
RcHm_v2.0_Chr1g0380921 Rosa chinensis HOM05D000896 ORTHO05D000594 9.9e-06 53.9 118 30.5
Sp1g04460 Schrenkiella parvula HOM05D000705 ORTHO05D002970 9.9e-06 53.9 89 37.1


User provided reference genes

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