Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.3e-206 723.0 408 100.0
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.2e-149 532.3 407 76.7
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 5.1e-147 525.0 415 75.2
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.9e-141 506.5 408 77.7
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 5.6e-138 495.0 409 74.8
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 5.6e-138 495.0 409 74.8
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 5.0e-126 455.3 407 75.2
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.0e-115 421.0 423 65.7
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.4e-109 400.6 415 67.2
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.8e-105 385.6 421 63.2
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.1e-101 374.4 413 64.4
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.7e-92 342.4 431 57.3
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.1e-88 331.3 405 56.8
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.3e-85 319.7 411 60.1
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.6e-84 317.4 412 55.3
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 6.1e-84 315.5 406 56.7
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.0e-83 312.8 410 58.0
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 4.0e-83 312.8 408 54.7
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 7.5e-82 308.5 399 58.6
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 7.5e-82 308.5 410 54.4
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 7.5e-82 308.5 410 54.4
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.3e-81 307.8 408 54.7
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.3e-81 307.8 408 54.7
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.3e-81 307.8 408 54.7
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 8.6e-78 295.0 413 53.8
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 8.6e-78 295.0 413 53.8
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.5e-77 294.3 418 55.3
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 3.6e-76 289.7 415 55.2
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.4e-74 283.1 425 53.9
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.7e-73 280.8 398 57.3
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.6e-60 236.5 415 44.3
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.2e-60 235.7 415 45.1
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 6.2e-60 235.7 414 46.6
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 5.2e-59 232.6 415 44.6
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.9e-57 226.9 414 44.2
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 3.2e-56 223.4 406 46.6
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 5.4e-56 222.6 417 45.1
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.1e-55 220.7 420 44.5
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.0e-54 216.9 411 43.6
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 9.6e-53 211.8 404 43.1
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 9.6e-53 211.8 413 45.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.6e-52 211.1 418 43.1
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.6e-52 211.1 419 41.5
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 6.2e-52 209.1 408 42.6
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 6.2e-52 209.1 405 41.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.8e-51 207.6 421 42.0
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 2.4e-51 207.2 415 42.7
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 8.9e-51 205.3 355 45.1
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.5e-50 204.5 416 40.9
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.6e-50 203.8 420 44.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 4.4e-50 203.0 438 42.9
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 6.4e-49 199.1 399 45.4
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 6.4e-49 199.1 360 42.8
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 8.4e-49 198.7 412 41.7
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.1e-48 198.4 308 52.6
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.9e-48 197.6 437 40.0
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 3.2e-48 196.8 409 41.6
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 5.4e-48 196.1 415 41.4
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 7.1e-48 195.7 400 43.0
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.1e-48 195.7 403 40.9
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 7.1e-48 195.7 357 42.3
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 9.3e-48 195.3 418 40.2
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.6e-47 194.5 417 43.2
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 2.1e-47 194.1 407 39.8
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.0e-46 191.8 416 41.8
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.7e-46 191.0 399 44.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 2.3e-46 190.7 407 41.3
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 3.0e-46 190.3 412 39.3
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 3.0e-46 190.3 360 41.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.9e-46 189.9 412 42.7
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 3.9e-46 189.9 411 42.1
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 5.1e-46 189.5 359 40.7
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 5.1e-46 189.5 415 40.5
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 6.6e-46 189.1 418 41.1
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 6.6e-46 189.1 355 41.7
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 8.7e-46 188.7 414 38.6
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.5e-45 188.0 412 42.2
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.9e-45 187.6 397 43.6
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 2.5e-45 187.2 397 40.8
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 3.3e-45 186.8 409 42.3
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 7.3e-45 185.7 365 40.8
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 1.3e-44 184.9 432 40.3
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 2.1e-44 184.1 416 38.9
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 2.8e-44 183.7 403 41.2
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 3.6e-44 183.3 420 41.0
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 4.8e-44 183.0 420 41.0
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 8.1e-44 182.2 435 37.2
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.4e-43 180.6 404 41.3
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 3.1e-43 180.3 395 43.0
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 6.9e-43 179.1 390 40.3
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 9.0e-43 178.7 354 41.8
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.2e-42 178.3 403 39.2
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.5e-42 177.9 355 39.4
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.5e-42 177.9 399 41.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 2.0e-42 177.6 402 40.0
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 5.8e-42 176.0 379 40.9
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 5.8e-42 176.0 414 40.1
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 7.6e-42 175.6 410 39.5
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 9.9e-42 175.3 421 42.3
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.3e-41 174.9 452 39.6
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.7e-41 174.5 404 39.6
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 4.2e-40 169.9 411 41.4
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.2e-39 168.3 419 39.1
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.5e-39 166.8 410 37.8
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.0e-38 165.2 406 39.2
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.3e-38 164.9 406 38.7
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.7e-38 164.5 405 40.2
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 8.7e-38 162.2 367 40.9
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 8.7e-38 162.2 418 37.3
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 8.7e-38 162.2 380 39.7
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.9e-37 161.0 351 35.6
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 2.5e-37 160.6 442 36.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.3e-37 160.2 288 43.1
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 5.6e-37 159.5 423 39.0
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.8e-35 154.5 424 39.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 5.3e-35 152.9 413 37.0
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.5e-34 151.4 403 36.0
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 9.9e-34 148.7 349 38.1
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 6.4e-33 146.0 414 37.4
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 6.0e-31 139.4 144 61.1
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 6.0e-31 139.4 178 54.5
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.0e-30 138.7 357 35.9
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.8e-30 137.9 406 34.2
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.6e-28 131.3 217 46.1
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.6e-28 131.3 396 34.6
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.1e-28 131.0 372 34.1
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.1e-27 128.6 373 35.1
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.5e-26 124.8 446 31.4
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 2.0e-26 124.4 408 35.8
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 5.8e-26 122.9 415 35.7
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.2e-24 116.7 294 37.1
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 1.2e-23 115.2 365 34.2
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 2.7e-23 114.0 395 34.7
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 4.6e-23 113.2 395 32.7
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.8e-19 101.3 354 32.8
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 9.0e-19 99.0 245 38.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 6.5e-17 92.8 283 34.6
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 8.7e-14 82.4 80 60.0
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.3e-09 68.6 142 42.3
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.6e-07 60.5 353 27.5
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 1.8e-06 58.2 168 39.3
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.0e-06 57.4 217 31.3


User provided reference genes

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