Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 0.0e+00 1504.6 722 100.0
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 3.2e-301 1038.1 800 68.4
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.4e-296 1021.9 767 68.7
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 2.5e-250 869.0 781 58.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 2.2e-249 865.9 785 58.1
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.8e-248 862.8 745 60.5
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.2e-247 860.1 785 57.7
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.0e-247 859.4 784 58.4
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.7e-246 856.3 778 58.4
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 7.9e-244 847.4 777 58.0
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 3.0e-243 845.5 778 57.5
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 6.7e-243 844.3 767 58.5
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-239 833.6 807 55.5
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 4.5e-239 831.6 775 56.4
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.9e-238 828.9 782 56.0
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 5.0e-238 828.2 784 56.4
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.7e-236 822.4 775 55.9
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 4.7e-236 821.6 641 68.2
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 3.7e-233 812.0 788 55.1
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 6.3e-233 811.2 793 54.9
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 7.0e-232 807.7 793 54.7
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 2.6e-231 805.8 793 54.5
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.3e-230 803.5 742 57.7
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 1.3e-230 803.5 787 54.9
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 5.0e-230 801.6 805 53.5
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.5e-229 800.0 813 53.1
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 6.7e-227 791.2 800 54.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.8e-225 785.8 801 52.8
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 5.2e-219 765.0 777 51.6
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 5.2e-219 765.0 775 51.7
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 6.8e-219 764.6 780 51.4
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 6.8e-219 764.6 776 51.4
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 9.8e-218 760.8 772 51.4
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 3.7e-217 758.8 775 51.9
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 2.4e-216 756.1 777 50.7
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 5.4e-216 755.0 776 51.0
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 7.0e-216 754.6 773 51.2
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 2.7e-215 752.7 777 51.5
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 4.5e-215 751.9 777 50.7
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 4.5e-215 751.9 777 51.0
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 5.9e-215 751.5 783 49.9
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 7.7e-215 751.1 763 51.4
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 2.3e-214 749.6 777 51.0
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 3.8e-214 748.8 777 50.8
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 6.6e-214 748.0 773 50.8
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 1.5e-213 746.9 775 49.7
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 1.5e-213 746.9 786 50.1
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 9.5e-213 744.2 773 49.4
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 1.2e-212 743.8 783 51.3
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 4.7e-212 741.9 774 50.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 2.3e-211 739.6 772 50.1
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 2.3e-211 739.6 775 49.8
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 3.0e-211 739.2 774 50.3
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 3.0e-211 739.2 776 49.6
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 6.8e-211 738.0 776 49.6
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 8.9e-211 737.6 772 49.0
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 1.2e-210 737.3 774 50.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 1.2e-210 737.3 778 49.7
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 1.5e-210 736.9 771 50.8
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 2.0e-210 736.5 551 70.1
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 2.0e-210 736.5 784 49.0
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 2.0e-210 736.5 759 51.6
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 3.4e-210 735.7 776 49.6
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 9.8e-210 734.2 784 50.3
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 8.3e-209 731.1 785 49.6
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 1.4e-208 730.3 779 48.9
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.4e-208 730.3 785 48.9
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 2.4e-208 729.6 785 49.3
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.1e-208 729.2 786 49.1
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 5.4e-208 728.4 812 47.9
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 9.2e-208 727.6 742 50.9
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 1.2e-207 727.2 804 48.5
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 1.6e-207 726.9 772 49.4
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 1.6e-207 726.9 784 49.1
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 4.5e-207 725.3 798 51.3
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 2.9e-206 722.6 785 49.2
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 3.8e-206 722.2 789 48.7
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 8.6e-206 721.1 730 51.4
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 1.1e-205 720.7 797 47.6
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 1.9e-205 719.9 778 48.6
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 4.3e-205 718.8 735 51.4
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.3e-205 718.8 793 48.8
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 4.3e-205 718.8 778 48.5
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 1.2e-204 717.2 774 48.8
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.6e-204 716.8 779 48.7
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 4.7e-204 715.3 787 47.8
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 4.7e-204 715.3 753 50.5
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 8.0e-204 714.5 778 48.6
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.0e-203 714.1 778 48.2
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 1.4e-203 713.8 772 49.1
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.4e-203 713.8 779 48.7
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 5.2e-203 711.8 778 47.9
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 1.2e-202 710.7 774 48.3
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 1.2e-202 710.7 778 48.2
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 4.9e-201 705.3 777 47.9
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 2.4e-200 703.0 787 47.4
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 1.6e-199 700.3 772 47.3
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.6e-199 700.3 790 46.3
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 4.6e-199 698.7 778 47.0
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 4.6e-199 698.7 900 44.3
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 4.3e-197 692.2 769 47.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 7.3e-197 691.4 762 48.4
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 9.5e-197 691.0 785 45.7
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.1e-196 689.9 792 47.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 4.7e-196 688.7 772 47.5
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 6.2e-196 688.3 778 46.8
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 6.2e-196 688.3 790 46.1
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 8.0e-196 688.0 781 46.2
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 2.0e-194 683.3 773 47.7
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 4.9e-193 678.7 791 46.1
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 1.1e-192 677.6 791 46.0
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 5.6e-189 665.2 787 46.1
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.0e-186 656.8 759 46.5
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.6e-183 647.1 730 47.8
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 5.6e-181 638.6 772 44.7
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 1.6e-180 637.1 774 44.4
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 9.9e-178 627.9 724 47.0
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.1e-176 624.4 808 43.6
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 5.4e-176 622.1 697 49.4
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 3.5e-175 619.4 851 42.1
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.3e-174 616.7 766 45.2
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 6.9e-171 605.1 772 43.8
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 2.5e-165 586.6 798 43.0
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 3.7e-156 556.2 795 40.0
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.9e-149 533.9 578 49.1
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 9.6e-149 531.6 474 57.6
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 5.3e-147 525.8 778 37.4
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 2.5e-144 516.9 796 38.1
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.7e-137 494.2 667 40.6
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.2e-130 471.5 883 40.1
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.6e-125 453.8 532 46.1
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.2e-122 444.9 601 41.9
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.2e-121 440.7 428 51.9
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.5e-120 438.0 615 42.8
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.6e-119 433.3 436 50.5
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.8e-116 422.9 469 48.0
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 5.7e-109 399.4 864 32.1
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 6.5e-105 386.0 434 47.9
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 6.1e-103 379.4 452 44.9
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 2.8e-100 370.5 502 41.8
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 6.4e-84 316.2 321 50.8
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.6e-74 285.0 327 45.6
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 2.7e-74 284.3 269 52.8
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.6e-73 279.3 345 44.3
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.5e-64 251.1 349 41.0
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 9.3e-59 232.6 618 29.1
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 7.3e-56 223.0 241 47.7
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 9.3e-51 206.1 300 39.0
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 1.3e-49 202.2 314 38.9
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.7e-49 201.8 324 36.7
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.8e-47 194.5 703 25.2
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 2.1e-42 178.3 135 59.3
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 4.0e-38 164.1 202 45.5
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 4.8e-31 140.6 139 51.1
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 4.2e-27 127.5 90 64.4
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 2.2e-23 115.2 92 60.9
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 9.4e-19 99.8 102 50.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 9.4e-19 99.8 173 33.5
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 3.9e-17 94.4 81 51.9
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.5e-16 92.4 77 58.4
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 9.7e-16 89.7 195 31.8
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.5e-13 82.4 52 67.3
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 3.4e-13 81.3 39 87.2
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 3.8e-12 77.8 84 45.2
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 4.7e-10 70.9 81 43.2
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.4e-09 69.3 170 30.0
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.6e-08 65.1 49 61.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 7.4e-08 63.5 81 40.7
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.7e-07 61.2 61 49.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.1e-06 59.7 66 43.9
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 9.1e-06 56.6 84 36.9


User provided reference genes

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