Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 3.2e-100 368.6 212 100.0
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.5e-60 236.1 159 92.5
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.5e-60 236.1 159 92.5
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.5e-60 236.1 159 92.5
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 5.5e-60 235.0 159 91.8
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 7.2e-60 234.6 159 91.8
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 3.5e-59 232.3 159 88.7
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.0e-58 230.7 159 90.6
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 3.7e-56 222.2 160 86.2
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 6.3e-56 221.5 129 92.2
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.1e-55 220.7 129 91.5
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 6.9e-55 218.0 127 92.1
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.4e-54 215.7 125 92.8
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 5.9e-54 214.9 159 84.9
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.1e-52 210.7 168 80.4
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 4.2e-52 208.8 159 82.4
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 1.8e-50 203.4 127 87.4
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 4.1e-47 192.2 120 81.7
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 4.1e-47 192.2 127 77.2
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 4.1e-47 192.2 152 78.3
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.5e-46 190.3 123 79.7
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.5e-46 190.3 118 82.2
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.5e-46 190.3 122 80.3
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 1.5e-46 190.3 122 82.0
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 2.0e-46 189.9 122 79.5
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 2.6e-46 189.5 154 76.6
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 2.6e-46 189.5 120 80.0
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.4e-46 189.1 120 79.2
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 5.9e-46 188.3 122 79.5
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 5.9e-46 188.3 124 77.4
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 5.9e-46 188.3 128 74.2
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 5.9e-46 188.3 158 74.1
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 1.0e-45 187.6 122 78.7
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.7e-45 186.8 152 77.0
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.7e-45 186.8 122 80.3
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 2.9e-45 186.0 123 77.2
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 2.9e-45 186.0 120 79.2
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 5.0e-45 185.3 145 77.2
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 6.5e-45 184.9 135 74.8
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 6.5e-45 184.9 120 77.5
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 8.5e-45 184.5 120 77.5
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 8.5e-45 184.5 122 78.7
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 8.5e-45 184.5 122 78.7
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 8.5e-45 184.5 152 77.0
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.1e-44 184.1 120 77.5
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.1e-44 184.1 121 79.3
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 1.1e-44 184.1 121 79.3
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 1.4e-44 183.7 152 74.3
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.9e-44 183.3 121 78.5
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.5e-44 183.0 124 76.6
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.2e-44 182.2 152 76.3
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 4.2e-44 182.2 152 76.3
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.2e-44 182.2 122 77.0
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 4.2e-44 182.2 124 75.0
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 5.5e-44 181.8 124 75.0
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 7.2e-44 181.4 128 73.4
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.4e-44 181.0 122 77.0
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 9.4e-44 181.0 124 72.6
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.2e-43 180.6 120 76.7
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.2e-43 180.6 122 76.2
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.2e-43 180.6 145 76.6
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.1e-43 179.9 123 73.2
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 2.7e-43 179.5 127 74.8
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 2.7e-43 179.5 120 78.3
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 2.7e-43 179.5 123 74.0
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 2.7e-43 179.5 122 76.2
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 4.7e-43 178.7 122 75.4
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 6.1e-43 178.3 123 74.8
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 7.9e-43 177.9 123 73.2
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 7.9e-43 177.9 123 73.2
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 7.9e-43 177.9 122 76.2
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 7.9e-43 177.9 152 75.0
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 7.9e-43 177.9 154 67.5
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.4e-42 177.2 123 75.6
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.4e-42 177.2 154 68.8
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.8e-42 176.8 122 76.2
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.8e-42 176.8 121 72.7
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 2.3e-42 176.4 152 75.0
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 5.1e-42 175.3 123 74.0
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 5.1e-42 175.3 122 74.6
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 5.1e-42 175.3 122 74.6
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 6.7e-42 174.9 120 75.8
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 6.7e-42 174.9 120 75.8
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 6.7e-42 174.9 177 63.3
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 6.7e-42 174.9 122 73.0
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 6.7e-42 174.9 122 74.6
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 2.0e-41 173.3 122 75.4
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.6e-41 172.9 121 72.7
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 1.3e-40 170.6 121 71.9
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-40 170.6 121 71.9
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.3e-40 170.6 121 74.4
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 1.3e-40 170.6 123 70.7
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.7e-40 170.2 120 72.5
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.7e-40 170.2 120 73.3
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.2e-40 169.9 150 70.7
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.2e-40 169.9 120 72.5
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.8e-40 169.5 121 71.1
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.8e-40 169.5 122 73.8
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 3.7e-40 169.1 128 69.5
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.1e-39 167.5 123 71.5
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 3.1e-39 166.0 122 70.5
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 3.1e-39 166.0 125 69.6
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 7.0e-39 164.9 122 73.0
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 9.1e-39 164.5 120 72.5
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 5.9e-38 161.8 123 67.5
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 5.9e-38 161.8 160 55.0
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 6.5e-37 158.3 127 62.2
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.5e-36 157.1 153 61.4
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.5e-36 157.1 130 63.8
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.9e-36 156.8 122 69.7
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 4.2e-36 155.6 193 49.7
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-35 154.1 116 69.8
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 3.6e-35 152.5 202 47.5
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 6.1e-35 151.8 96 80.2
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.4e-34 150.6 152 69.7
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 2.6e-33 146.4 127 60.6
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 4.4e-33 145.6 152 61.8
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 9.7e-33 144.4 98 75.5
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 9.7e-33 144.4 149 63.8
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-32 144.1 98 76.5
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.4e-31 140.6 100 74.0
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.4e-31 139.8 97 74.2
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.1e-31 139.4 127 56.7
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 4.1e-31 139.0 89 79.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 3.8e-29 132.5 125 54.4
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.1e-28 131.0 122 53.3
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.5e-28 130.6 125 53.6
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.5e-28 129.8 156 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.8e-26 123.6 120 50.8
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.2e-25 120.9 102 63.7
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 4.2e-20 102.4 81 67.9
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.4e-20 101.3 102 54.9
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.8e-18 97.1 94 55.3
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.8e-18 97.1 94 55.3
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.2e-16 90.1 96 54.2
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 2.2e-16 90.1 63 68.3
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 2.8e-11 73.2 70 60.0
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 4.7e-11 72.4 70 60.0
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 4.7e-11 72.4 70 60.0
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 8.0e-11 71.6 52 63.5
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 7.0e-07 58.5 45 57.8


User provided reference genes

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