Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 2.6e-138 495.4 249 100.0
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 4.0e-110 401.7 253 81.4
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 9.8e-109 397.1 253 81.4
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 9.8e-109 397.1 253 81.4
A03p04960 Brassica napus HOM05D011503 ORTHO05D013743 2.8e-87 325.9 260 69.2
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 6.4e-68 261.5 183 73.2
BcaB01g05489 Brassica carinata HOM05D011503 ORTHO05D013743 1.4e-46 190.7 145 71.7
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 3.3e-40 169.5 246 41.1
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 2.2e-39 166.8 246 43.5
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 6.1e-34 148.7 244 38.9
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 6.1e-34 148.7 244 38.9
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 1.5e-32 144.1 246 37.8
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 1.5e-32 144.1 246 37.8
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 2.2e-31 140.2 245 39.2
BcaC07g41563 Brassica carinata HOM05D011503 ORTHO05D013743 2.8e-31 139.8 300 34.0
C08p45620 Brassica napus HOM05D011503 ORTHO05D013743 2.8e-31 139.8 300 34.0
BolC8t52115H Brassica oleracea HOM05D011503 ORTHO05D013743 2.8e-31 139.8 300 34.0
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 2.9e-28 129.8 226 37.6
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.8e-22 110.5 221 34.8
Carub.0001s1426 Capsella rubella HOM05D003358 ORTHO05D043389 1.2e-18 97.8 210 33.8
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 2.3e-17 93.6 250 31.2
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 8.8e-17 91.7 251 31.5
BcaB01g05488 Brassica carinata HOM05D011503 ORTHO05D013743 3.3e-16 89.7 200 33.0
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 3.3e-16 89.7 250 30.4
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 4.4e-16 89.4 240 30.0
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 5.7e-16 89.0 248 29.8
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 7.4e-16 88.6 219 33.8
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 7.4e-16 88.6 242 31.4
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 7.4e-16 88.6 242 30.2
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 7.4e-16 88.6 251 30.3
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 9.7e-16 88.2 251 30.3
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 1.3e-15 87.8 251 29.9
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 2.2e-15 87.0 250 29.2
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 2.2e-15 87.0 251 30.3
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 2.8e-15 86.7 251 29.5
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 2.8e-15 86.7 251 29.9
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 2.8e-15 86.7 251 29.5
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 2.8e-15 86.7 251 29.9
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 6.3e-15 85.5 247 27.9
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 6.3e-15 85.5 250 29.2
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 6.3e-15 85.5 240 28.3
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 8.2e-15 85.1 250 28.8
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 8.2e-15 85.1 241 30.3
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 8.2e-15 85.1 242 29.8
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 1.1e-14 84.7 222 30.2
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.4e-14 84.3 240 30.0
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 1.8e-14 84.0 250 28.8
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.8e-14 84.0 219 31.1
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.8e-14 84.0 219 31.1
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 1.8e-14 84.0 219 31.1
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 2.4e-14 83.6 241 30.7
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 2.4e-14 83.6 241 28.6
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 2.4e-14 83.6 249 28.9
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 2.4e-14 83.6 250 28.8
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 3.1e-14 83.2 223 30.5
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 3.1e-14 83.2 242 29.8
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 3.1e-14 83.2 219 32.0
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 3.1e-14 83.2 250 30.4
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 3.1e-14 83.2 242 28.5
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 3.1e-14 83.2 241 29.0
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 4.1e-14 82.8 241 29.9
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 4.1e-14 82.8 230 31.3
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 4.1e-14 82.8 250 29.6
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 4.1e-14 82.8 241 29.0
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 5.3e-14 82.4 250 30.4
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 5.3e-14 82.4 248 31.9
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 5.3e-14 82.4 250 30.0
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 5.3e-14 82.4 245 27.8
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 7.0e-14 82.0 242 29.8
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 7.0e-14 82.0 250 29.6
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 9.1e-14 81.6 250 28.8
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 9.1e-14 81.6 250 30.0
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.2e-13 81.3 197 32.0
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 1.2e-13 81.3 240 28.3
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 1.2e-13 81.3 241 29.0
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 1.6e-13 80.9 242 29.8
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 1.6e-13 80.9 240 27.5
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 1.6e-13 80.9 251 28.7
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.6e-13 80.9 241 29.9
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 1.6e-13 80.9 250 26.8
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 2.0e-13 80.5 260 28.1
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 2.0e-13 80.5 185 33.0
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 2.0e-13 80.5 241 28.2
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 3.5e-13 79.7 218 30.3
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 3.5e-13 79.7 218 29.4
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.5e-13 79.7 241 29.9
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 3.5e-13 79.7 251 28.3
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 3.5e-13 79.7 243 27.6
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 3.5e-13 79.7 241 29.5
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 3.5e-13 79.7 218 29.4
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 4.5e-13 79.3 184 30.4
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 4.5e-13 79.3 241 29.9
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 4.5e-13 79.3 241 29.9
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 4.5e-13 79.3 241 29.9
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 4.5e-13 79.3 241 27.8
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 4.5e-13 79.3 240 29.2
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 4.5e-13 79.3 242 29.3
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 5.9e-13 79.0 242 29.3
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 5.9e-13 79.0 242 28.9
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 5.9e-13 79.0 251 28.3
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 7.7e-13 78.6 237 30.0
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 7.7e-13 78.6 250 27.6
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 1.0e-12 78.2 218 29.8
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 1.0e-12 78.2 219 29.7
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 1.3e-12 77.8 250 29.2
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 1.3e-12 77.8 250 29.2
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 1.3e-12 77.8 242 29.3
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 1.7e-12 77.4 240 29.6
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 1.7e-12 77.4 218 30.3
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 1.7e-12 77.4 232 28.4
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 1.7e-12 77.4 218 28.4
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 1.7e-12 77.4 251 27.1
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 2.2e-12 77.0 243 26.7
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 3.8e-12 76.3 251 28.7
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 5.0e-12 75.9 173 34.1
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 5.0e-12 75.9 251 27.9
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 5.0e-12 75.9 242 28.5
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 5.0e-12 75.9 219 29.2
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 6.5e-12 75.5 245 26.1
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 8.5e-12 75.1 246 26.4
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 8.5e-12 75.1 260 28.1
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 8.5e-12 75.1 243 28.4
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 1.1e-11 74.7 209 28.2
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 1.1e-11 74.7 246 27.6
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 1.1e-11 74.7 252 29.4
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 1.1e-11 74.7 213 30.0
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 1.5e-11 74.3 191 29.3
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 1.5e-11 74.3 249 26.1
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 2.5e-11 73.6 250 27.2
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 4.2e-11 72.8 229 31.0
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 5.5e-11 72.4 241 27.4
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 7.2e-11 72.0 191 28.8
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 7.2e-11 72.0 147 36.7
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 7.2e-11 72.0 240 27.1
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 7.2e-11 72.0 240 27.1
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 9.4e-11 71.6 187 27.8
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 9.4e-11 71.6 241 27.8
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 2.1e-10 70.5 249 28.1
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 3.6e-10 69.7 242 28.9
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 3.6e-10 69.7 259 27.4
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 4.7e-10 69.3 245 27.8
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 4.7e-10 69.3 233 28.8
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 4.7e-10 69.3 185 30.8
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 4.7e-10 69.3 250 25.6
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 1.0e-09 68.2 214 29.4
A09p62040 Brassica napus HOM05D011503 ORTHO05D013743 1.8e-09 67.4 226 28.8
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 1.8e-09 67.4 228 28.5
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 3.0e-09 66.6 256 26.2
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 8.8e-09 65.1 264 26.5
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 8.8e-09 65.1 172 30.8
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 1.2e-08 64.7 135 31.9
Medtr1g089920 Medicago truncatula HOM05D003358 ORTHO05D003864 1.5e-08 64.3 266 25.9
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 2.6e-08 63.5 246 26.0
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 2.6e-08 63.5 194 27.8
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 3.3e-08 63.2 231 29.0
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 3.3e-08 63.2 241 25.7
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 4.4e-08 62.8 181 29.8
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 4.4e-08 62.8 250 24.4
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 9.7e-08 61.6 245 29.0
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 1.7e-07 60.8 168 31.0
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 3.7e-07 59.7 247 27.5
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 6.3e-07 58.9 272 25.0
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 8.2e-07 58.5 232 28.4
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 8.2e-07 58.5 166 28.9
BraA09t41567Z Brassica rapa HOM05D011503 ORTHO05D013743 4.1e-06 56.2 82 42.7
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 4.1e-06 56.2 173 26.6
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 5.3e-06 55.8 172 29.7
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 7.0e-06 55.5 161 27.3
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 9.1e-06 55.1 136 31.6


User provided reference genes

Program Settings