Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g06301 Brassica carinata HOM05D011503 ORTHO05D013743 1.3e-123 446.4 226 100.0
C03p05700 Brassica napus HOM05D011503 ORTHO05D013743 8.9e-85 317.4 225 73.3
BolC3t13082H Brassica oleracea HOM05D011503 ORTHO05D013743 8.9e-85 317.4 225 73.3
A03p04950 Brassica napus HOM05D011503 ORTHO05D013743 1.2e-81 307.0 226 71.2
BraA03t09833Z Brassica rapa HOM05D011503 ORTHO05D013743 1.2e-81 307.0 226 71.2
BcaB08g34405 Brassica carinata HOM05D011503 ORTHO05D013743 2.7e-65 252.7 253 58.1
BcaC07g41563 Brassica carinata HOM05D011503 ORTHO05D013743 7.6e-52 208.0 277 48.4
C08p45620 Brassica napus HOM05D011503 ORTHO05D013743 7.6e-52 208.0 277 48.4
BolC8t52115H Brassica oleracea HOM05D011503 ORTHO05D013743 7.6e-52 208.0 277 48.4
BcaB01g05488 Brassica carinata HOM05D011503 ORTHO05D013743 1.4e-42 177.2 182 55.5
AL1G26480 Arabidopsis lyrata HOM05D003358 ORTHO05D013743 1.5e-36 157.1 220 46.4
BraA03t09834Z Brassica rapa HOM05D003358 ORTHO05D003864 3.3e-31 139.4 225 38.7
Carub.0001s1427 Capsella rubella HOM05D003358 ORTHO05D003864 4.4e-31 139.0 227 42.3
C03p05670 Brassica napus HOM05D003358 ORTHO05D003864 1.7e-30 137.1 225 39.6
BolC3t13079H Brassica oleracea HOM05D003358 ORTHO05D003864 1.7e-30 137.1 225 39.6
BcaB01g06302 Brassica carinata HOM05D003358 ORTHO05D003864 7.0e-29 131.7 226 37.6
A09p62040 Brassica napus HOM05D011503 ORTHO05D013743 4.7e-25 119.0 231 39.4
BcaB01g05487 Brassica carinata HOM05D011503 ORTHO05D003864 7.0e-21 105.1 124 45.2
BraA09t41567Z Brassica rapa HOM05D011503 ORTHO05D013743 5.9e-20 102.1 106 56.6
AL1G26440 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.2e-19 100.1 209 34.4
A03p04960 Brassica napus HOM05D011503 ORTHO05D013743 8.5e-19 98.2 224 31.7
AL1G26420 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.5e-18 96.7 208 33.2
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.0e-15 87.0 227 32.2
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 7.5e-15 85.1 217 31.8
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.3e-14 84.3 227 33.0
Haze_04760 Corylus avellana HOM05D003358 ORTHO05D003864 1.7e-14 84.0 226 31.0
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 1.7e-14 84.0 227 31.3
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 1.7e-14 84.0 227 31.3
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 2.2e-14 83.6 227 33.0
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 2.8e-14 83.2 227 33.0
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 2.8e-14 83.2 227 32.2
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 3.7e-14 82.8 227 31.3
ClCG09G006810 Citrullus lanatus HOM05D003358 ORTHO05D003864 4.8e-14 82.4 226 30.1
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 4.8e-14 82.4 226 29.6
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 4.8e-14 82.4 225 32.4
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 6.3e-14 82.0 227 30.4
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 6.3e-14 82.0 226 29.6
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 6.3e-14 82.0 227 30.8
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 6.3e-14 82.0 227 30.8
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 6.3e-14 82.0 227 30.8
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 6.3e-14 82.0 226 28.8
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 8.3e-14 81.6 226 32.3
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 8.3e-14 81.6 226 32.3
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 8.3e-14 81.6 226 32.3
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 8.3e-14 81.6 226 29.6
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 8.3e-14 81.6 227 30.4
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 8.3e-14 81.6 226 30.5
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 8.3e-14 81.6 219 31.1
Atru.chr9.1958 Acer truncatum HOM05D003358 ORTHO05D003864 1.1e-13 81.3 193 29.5
Cfa006095 Carpinus fangiana HOM05D003358 ORTHO05D003864 1.1e-13 81.3 205 31.7
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 1.1e-13 81.3 227 30.8
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 1.1e-13 81.3 219 31.1
AT1G63900 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 1.4e-13 80.9 227 31.7
Carub.0001s1424 Capsella rubella HOM05D003358 ORTHO05D003864 1.4e-13 80.9 222 28.8
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 1.4e-13 80.9 227 32.2
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 1.4e-13 80.9 226 30.5
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 1.4e-13 80.9 227 30.4
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 1.8e-13 80.5 222 32.9
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 1.8e-13 80.5 227 31.7
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.8e-13 80.5 226 31.0
Nitab4.5_0007767g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.8e-13 80.5 219 31.5
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 1.8e-13 80.5 226 29.6
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 1.8e-13 80.5 218 33.0
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 2.4e-13 80.1 226 31.4
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 2.4e-13 80.1 227 30.4
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 2.4e-13 80.1 219 31.1
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 3.1e-13 79.7 227 30.8
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 3.1e-13 79.7 219 32.0
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 4.1e-13 79.3 218 33.0
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 4.1e-13 79.3 227 30.4
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 4.1e-13 79.3 227 30.0
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 4.1e-13 79.3 227 29.1
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 5.4e-13 79.0 227 30.0
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 5.4e-13 79.0 227 30.4
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 5.4e-13 79.0 219 33.8
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 5.4e-13 79.0 219 33.8
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 5.4e-13 79.0 219 31.5
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 5.4e-13 79.0 219 32.0
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 5.4e-13 79.0 206 33.0
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 7.0e-13 78.6 227 31.7
BcaB01g06323 Brassica carinata HOM05D003303 ORTHO05D000019 7.0e-13 78.6 71 62.0
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 7.0e-13 78.6 228 31.1
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 7.0e-13 78.6 228 31.6
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 7.0e-13 78.6 228 31.1
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 7.0e-13 78.6 227 29.5
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 7.0e-13 78.6 226 29.6
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 9.1e-13 78.2 219 32.4
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 9.1e-13 78.2 220 33.6
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 9.1e-13 78.2 197 33.0
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 1.2e-12 77.8 226 30.5
arahy.Tifrunner.gnm1.ann1.N9ZP1U Arachis hypogaea HOM05D003358 ORTHO05D003864 1.2e-12 77.8 226 30.5
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 1.2e-12 77.8 219 31.1
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 1.2e-12 77.8 227 30.8
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 1.2e-12 77.8 227 30.0
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 1.2e-12 77.8 220 32.3
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 1.2e-12 77.8 228 30.7
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 1.6e-12 77.4 228 31.1
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 1.6e-12 77.4 228 31.1
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 1.6e-12 77.4 227 31.7
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 2.0e-12 77.0 228 30.7
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 2.0e-12 77.0 227 28.6
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 2.0e-12 77.0 218 31.7
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 2.7e-12 76.6 227 29.5
Phvul.007G169100 Phaseolus vulgaris HOM05D003358 ORTHO05D003864 2.7e-12 76.6 218 31.2
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 3.5e-12 76.3 228 30.7
Os07g0647800 Oryza sativa ssp. japonica HOM05D003358 ORTHO05D003864 3.5e-12 76.3 218 30.3
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 4.5e-12 75.9 219 32.0
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 5.9e-12 75.5 193 32.6
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 5.9e-12 75.5 226 31.0
Zm00001eb110530 Zea mays HOM05D003358 ORTHO05D003864 5.9e-12 75.5 219 30.1
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 7.7e-12 75.1 219 31.5
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 7.7e-12 75.1 219 31.5
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 7.7e-12 75.1 218 31.2
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 1.0e-11 74.7 212 31.1
Ca_10402_v3 Cicer arietinum L. HOM05D003358 ORTHO05D003864 1.0e-11 74.7 226 29.6
Eucgr.H01525 Eucalyptus grandis HOM05D003358 ORTHO05D003864 1.0e-11 74.7 219 29.7
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 1.0e-11 74.7 219 33.3
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.3e-11 74.3 219 30.6
C03p05710 Brassica napus HOM05D003358 ORTHO05D003864 1.3e-11 74.3 234 29.1
Carub.0001s1426 Capsella rubella HOM05D003358 ORTHO05D043389 1.3e-11 74.3 224 31.2
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 1.3e-11 74.3 189 31.7
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 1.7e-11 73.9 227 29.5
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 2.9e-11 73.2 220 31.4
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 3.8e-11 72.8 226 28.8
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 3.8e-11 72.8 227 30.4
BcaB03g13087 Brassica carinata HOM05D003358 ORTHO05D003864 3.8e-11 72.8 201 31.3
CAN.G1682.14 Capsicum annuum HOM05D003358 ORTHO05D003864 3.8e-11 72.8 218 29.8
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 5.0e-11 72.4 224 27.2
Nn4g26144 Nelumbo nucifera HOM05D003358 ORTHO05D003864 6.5e-11 72.0 226 28.8
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 6.5e-11 72.0 220 30.5
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 6.5e-11 72.0 217 28.6
BcaB01g05489 Brassica carinata HOM05D011503 ORTHO05D013743 8.5e-11 71.6 88 46.6
A08p31850 Brassica napus HOM05D003358 ORTHO05D003864 1.1e-10 71.2 231 29.4
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 1.1e-10 71.2 226 30.5
BolC3t13084H Brassica oleracea HOM05D003358 ORTHO05D003864 1.5e-10 70.9 188 30.3
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 1.5e-10 70.9 224 28.6
CSS0028362 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 1.9e-10 70.5 193 32.1
BolC8t49311H Brassica oleracea HOM05D003358 ORTHO05D003864 2.5e-10 70.1 213 28.2
BolC8t49309H Brassica oleracea HOM05D003358 ORTHO05D003864 4.2e-10 69.3 201 28.9
Prupe.8G246200 Prunus persica HOM05D003358 ORTHO05D003864 9.4e-10 68.2 109 38.5
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 1.2e-09 67.8 218 28.9
Nitab4.5_0002093g0030 Nicotiana tabacum HOM05D003358 ORTHO05D003864 1.2e-09 67.8 169 32.5
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 1.2e-09 67.8 185 32.4
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 2.1e-09 67.0 218 29.4
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 2.7e-09 66.6 219 27.9
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 3.6e-09 66.2 187 30.5
BcaC07g38753 Brassica carinata HOM05D003358 ORTHO05D003864 6.1e-09 65.5 200 31.0
C08p16840 Brassica napus HOM05D003358 ORTHO05D003864 6.1e-09 65.5 200 31.0
A09p54880 Brassica napus HOM05D003358 ORTHO05D003864 1.4e-08 64.3 194 28.9
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 1.8e-08 63.9 219 31.1
BolC8t49305H Brassica oleracea HOM05D003358 ORTHO05D003864 2.3e-08 63.5 201 30.3
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 3.0e-08 63.2 223 29.6
TPR.G13403 Trifolium pratense HOM05D003358 ORTHO05D003864 3.0e-08 63.2 104 40.4
Medtr1g089910 Medicago truncatula HOM05D003358 ORTHO05D003864 4.0e-08 62.8 196 31.1
Prupe.8G246300 Prunus persica HOM05D003358 ORTHO05D003864 4.0e-08 62.8 100 39.0
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 4.0e-08 62.8 239 25.9
BcaC02g10340 Brassica carinata HOM05D003358 ORTHO05D003864 5.2e-08 62.4 220 29.1
BolC4t24547H Brassica oleracea HOM05D003358 ORTHO05D003864 5.2e-08 62.4 222 28.4
Medtr1g089960 Medicago truncatula HOM05D003358 ORTHO05D003864 6.8e-08 62.0 239 26.4
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 8.8e-08 61.6 132 37.1
Thhalv10024073m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 8.8e-08 61.6 189 29.6
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.2e-07 61.2 132 31.1
BraA04t15751Z Brassica rapa HOM05D003358 ORTHO05D003864 1.5e-07 60.8 226 27.4
C04p30150 Brassica napus HOM05D003358 ORTHO05D003864 2.0e-07 60.5 220 28.6
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 2.6e-07 60.1 189 29.6
Gohir.D11G124766 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.6e-07 60.1 186 33.3
Migut.N02147 Erythranthe guttata HOM05D003358 ORTHO05D003864 3.4e-07 59.7 181 34.3
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.4e-07 59.7 120 35.0
Migut.N02149 Erythranthe guttata HOM05D003358 ORTHO05D003864 5.7e-07 58.9 200 31.0
Medtr7g094290 Medicago truncatula HOM05D003358 ORTHO05D003864 5.7e-07 58.9 177 31.1
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 5.7e-07 58.9 163 33.1
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 5.7e-07 58.9 211 28.4
A04p00330 Brassica napus HOM05D003358 ORTHO05D003864 7.5e-07 58.5 226 27.0
Medtr1g089940 Medicago truncatula HOM05D003358 ORTHO05D003864 1.3e-06 57.8 209 28.2
C08p16850 Brassica napus HOM05D003358 ORTHO05D003864 2.2e-06 57.0 96 33.3
A08p31860 Brassica napus HOM05D003358 ORTHO05D003864 6.3e-06 55.5 119 31.1
Migut.N02146 Erythranthe guttata HOM05D003358 ORTHO05D003864 8.3e-06 55.1 187 29.9
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 8.3e-06 55.1 212 26.4


User provided reference genes

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