Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.5e-135 486.5 310 100.0
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.4e-72 277.3 423 58.4
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 3.8e-70 269.2 421 58.2
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 3.8e-70 269.2 421 58.2
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.5e-69 267.3 431 55.5
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 6.1e-68 261.9 431 54.3
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.0e-67 261.2 439 53.5
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 3.7e-65 252.7 423 56.0
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 3.1e-64 249.6 429 52.0
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.5e-63 246.1 427 50.4
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.5e-63 246.1 434 47.9
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 2.9e-62 243.0 431 50.3
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 5.5e-61 238.8 434 52.8
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.8e-51 207.2 286 50.3
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 5.2e-51 205.7 292 61.3
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 5.2e-51 205.7 280 49.6
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 8.9e-51 204.9 286 50.7
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.2e-50 204.5 441 39.5
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.5e-50 204.1 286 49.0
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 2.0e-50 203.8 280 48.2
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.6e-50 203.4 293 48.1
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 2.6e-50 203.4 293 48.1
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 3.4e-50 203.0 293 48.1
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 3.4e-50 203.0 293 47.8
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.4e-50 203.0 280 48.6
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 3.4e-50 203.0 281 50.9
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 7.5e-50 201.8 424 41.7
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 7.5e-50 201.8 281 50.2
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.7e-49 200.7 438 39.0
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.7e-49 200.7 289 51.9
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.7e-49 200.7 434 43.1
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 2.2e-49 200.3 431 40.6
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 2.2e-49 200.3 281 49.8
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 4.9e-49 199.1 427 45.7
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 8.3e-49 198.4 286 49.3
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.1e-48 198.0 292 48.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.4e-48 197.6 280 46.8
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.4e-48 197.6 280 48.9
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.4e-48 197.6 291 50.5
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 2.4e-48 196.8 291 48.8
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 2.4e-48 196.8 281 49.5
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.2e-48 196.4 291 49.5
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 3.2e-48 196.4 288 48.6
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 3.2e-48 196.4 293 47.4
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 3.2e-48 196.4 423 42.1
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 4.1e-48 196.1 285 47.4
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 4.1e-48 196.1 285 47.4
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 7.0e-48 195.3 281 53.4
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 9.2e-48 194.9 420 39.3
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 1.2e-47 194.5 284 53.2
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-47 194.5 426 40.4
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.6e-47 194.1 285 47.4
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.6e-47 194.1 286 47.2
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.0e-47 193.7 284 50.7
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.0e-47 193.7 285 52.6
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.7e-47 193.4 283 49.5
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 2.7e-47 193.4 417 42.9
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 6.0e-47 192.2 278 47.8
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 7.8e-47 191.8 282 53.9
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.0e-46 191.4 429 40.6
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.0e-46 191.4 421 41.3
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.0e-46 191.4 287 45.6
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.0e-46 191.4 287 45.6
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.3e-46 191.0 432 41.0
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.3e-46 191.0 278 51.1
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.7e-46 190.7 278 51.8
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.3e-46 190.3 276 48.2
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 3.9e-46 189.5 432 39.8
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 6.6e-46 188.7 435 42.3
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 6.6e-46 188.7 427 42.9
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 8.6e-46 188.3 288 47.2
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.6e-46 188.3 285 54.0
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.5e-45 187.6 286 47.2
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.9e-45 187.2 427 42.9
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 1.9e-45 187.2 296 52.4
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.9e-45 187.2 421 39.2
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.5e-45 186.8 287 53.0
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 3.3e-45 186.4 288 49.0
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 5.6e-45 185.7 288 44.4
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.6e-45 185.7 427 42.4
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 7.3e-45 185.3 284 58.1
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 9.5e-45 184.9 284 46.8
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 9.5e-45 184.9 276 47.8
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.6e-44 184.1 282 45.4
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.8e-44 183.3 287 44.9
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.6e-44 183.0 285 54.0
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 6.2e-44 182.2 428 39.0
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.1e-43 181.4 301 49.8
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-43 181.4 285 56.1
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.8e-43 180.6 277 54.2
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.8e-43 180.6 277 54.2
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-43 180.3 428 42.1
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 3.1e-43 179.9 285 47.0
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 3.1e-43 179.9 293 49.1
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 6.8e-43 178.7 345 43.5
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 8.9e-43 178.3 213 57.3
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 8.9e-43 178.3 213 57.3
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.2e-42 177.9 283 45.2
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.2e-42 177.9 284 52.1
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.5e-42 177.6 297 53.5
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 2.0e-42 177.2 278 51.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 4.4e-42 176.0 281 44.8
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 5.8e-42 175.6 283 48.1
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 5.8e-42 175.6 273 46.9
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.7e-41 174.1 288 51.7
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.9e-41 173.3 283 45.6
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.9e-41 173.3 353 40.2
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 7.0e-40 168.7 354 40.7
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 7.0e-40 168.7 354 40.7
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 3.5e-39 166.4 437 42.8
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 3.5e-39 166.4 291 41.9
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 3.0e-38 163.3 202 55.9
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.1e-37 161.4 420 33.8
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 1.5e-37 161.0 285 44.9
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 5.6e-37 159.1 185 56.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 7.3e-37 158.7 277 43.0
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.6e-36 157.5 279 43.7
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 4.7e-36 156.0 196 54.1
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 6.2e-36 155.6 336 38.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.1e-35 154.8 192 52.1
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 4.0e-35 152.9 280 42.9
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 8.9e-35 151.8 274 44.2
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.3e-33 147.9 323 38.7
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 2.2e-33 147.1 205 50.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 3.7e-33 146.4 336 36.6
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 4.9e-33 146.0 189 48.1
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.4e-33 145.6 198 47.0
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 1.4e-32 144.4 178 53.9
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 2.1e-31 140.6 212 46.7
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 5.1e-30 136.0 199 45.7
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.1e-29 134.8 197 49.2
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 5.6e-29 132.5 96 74.0
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 3.6e-28 129.8 212 46.2
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.0e-26 124.0 199 41.2
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 8.4e-25 118.6 197 45.7
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.9e-24 117.5 100 66.0
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 2.5e-21 107.1 91 63.7
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.4e-19 101.3 236 40.7
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 5.2e-19 99.4 206 37.9
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.5e-18 97.8 168 47.0
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.4e-18 96.7 132 50.0
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.8e-18 95.9 142 45.1
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.9e-18 95.1 376 32.4
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 1.1e-16 91.7 194 33.5
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 5.4e-16 89.4 243 34.2
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.9e-13 80.9 201 34.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 8.1e-12 75.5 150 36.0
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.4e-11 73.9 148 43.2
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 5.3e-11 72.8 33 100.0
A03p00900 Brassica napus HOM05D001414 ORTHO05D033015 6.4e-09 65.9 41 87.8
C03p01160 Brassica napus HOM05D001414 ORTHO05D033015 1.1e-08 65.1 38 92.1
C03p01190 Brassica napus HOM05D001414 ORTHO05D000619 2.4e-08 63.9 74 58.1
Sp6g39740 Schrenkiella parvula HOM05D001414 ORTHO05D000619 3.2e-08 63.5 103 47.6
BcaB01g05873 Brassica carinata HOM05D001414 ORTHO05D000619 5.4e-08 62.8 74 56.8
BolC3t12679H Brassica oleracea HOM05D001414 ORTHO05D000619 9.3e-08 62.0 74 56.8
BraA03t09472Z Brassica rapa HOM05D001414 ORTHO05D000619 1.2e-07 61.6 151 39.7


User provided reference genes

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