Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05820 Brassica carinata HOM05D006951 ORTHO05D008594 6.0e-82 307.4 147 100.0
A03p01180 Brassica napus HOM05D006951 ORTHO05D008594 6.9e-78 293.9 145 95.9
BraA03t09500Z Brassica rapa HOM05D006951 ORTHO05D008594 6.9e-78 293.9 145 95.9
BcaB01g05838 Brassica carinata HOM05D006951 ORTHO05D008594 3.4e-77 291.6 146 95.9
C03p01520 Brassica napus HOM05D006951 ORTHO05D008594 3.4e-77 291.6 146 95.9
BolC3t12706H Brassica oleracea HOM05D006951 ORTHO05D008594 7.6e-77 290.4 146 95.2
Thhalv10014956m.g Eutrema salsugineum HOM05D006951 ORTHO05D008594 4.2e-75 284.6 146 94.5
Sp6g39280 Schrenkiella parvula HOM05D006951 ORTHO05D008594 7.9e-74 280.4 146 92.5
Carub.0006s0227 Capsella rubella HOM05D006951 ORTHO05D008594 1.0e-73 280.0 147 91.8
CARHR209870 Cardamine hirsuta HOM05D006951 ORTHO05D008594 1.3e-73 279.6 147 91.2
AL6G12830 Arabidopsis lyrata HOM05D006951 ORTHO05D008594 5.8e-69 264.2 130 94.6
Aa31LG1G21700 Aethionema arabicum HOM05D006951 ORTHO05D008594 8.7e-65 250.4 128 89.8
THA.LOC104816356 Tarenaya hassleriana HOM05D006951 ORTHO05D008594 2.1e-58 229.2 134 79.1
VMungo1383G2370 Vigna mungo HOM05D006951 ORTHO05D008594 3.9e-57 224.9 134 74.6
Glyma.19G185200 Glycine max HOM05D006951 ORTHO05D008594 1.7e-55 219.5 127 76.4
Phvul.001G180100 Phaseolus vulgaris HOM05D006951 ORTHO05D008594 1.7e-55 219.5 134 73.1
CANSAT80G0954 Cannabis sativa HOM05D006951 ORTHO05D008594 3.7e-55 218.4 127 78.0
Gohir.D09G141300 Gossypium hirsutum HOM05D006951 ORTHO05D008594 3.7e-55 218.4 127 76.4
Gorai.006G162200 Gossypium raimondii HOM05D006951 ORTHO05D008594 3.7e-55 218.4 127 76.4
Sabra06G0096900 Salix brachista HOM05D006951 ORTHO05D008594 3.7e-55 218.4 127 78.0
Cpa.g.sc456.2 Carica papaya HOM05D006951 ORTHO05D008594 8.2e-55 217.2 129 76.7
Manes.16G055400 Manihot esculenta HOM05D006951 ORTHO05D008594 8.2e-55 217.2 132 75.0
Atru.chr8.1776 Acer truncatum HOM05D006951 ORTHO05D008594 1.4e-54 216.5 125 76.0
CiPaw.09G171000 Carya illinoinensis HOM05D006951 ORTHO05D008594 1.8e-54 216.1 127 74.8
Haze_20517 Corylus avellana HOM05D006951 ORTHO05D008594 2.4e-54 215.7 126 76.2
Thecc.05G069400 Theobroma cacao HOM05D006951 ORTHO05D008594 2.4e-54 215.7 130 73.8
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 3.1e-54 215.3 126 76.2
Duzib106G1710 Durio zibethinus HOM05D006951 ORTHO05D008594 4.1e-54 214.9 126 75.4
Gohir.A09G145200 Gossypium hirsutum HOM05D006951 ORTHO05D008594 4.1e-54 214.9 127 75.6
Potri.006G122700 Populus trichocarpa HOM05D006951 ORTHO05D008594 4.1e-54 214.9 127 77.2
Eucgr.A01658 Eucalyptus grandis HOM05D006951 ORTHO05D008594 2.6e-53 212.2 126 74.6
Actinidia26657 Actinidia chinensis HOM05D006951 ORTHO05D008594 7.7e-53 210.7 127 73.2
ClCG04G009460 Citrullus lanatus HOM05D006951 ORTHO05D008594 7.7e-53 210.7 125 76.0
FAN05G0469 Fragaria x ananassa HOM05D006951 ORTHO05D008594 7.7e-53 210.7 144 69.4
TWI74G0247 Tripterygium wilfordii HOM05D006951 ORTHO05D008594 7.7e-53 210.7 127 74.0
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 1.0e-52 210.3 130 74.6
FAN14G1959 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.3e-52 209.9 144 69.4
Actinidia28914 Actinidia chinensis HOM05D006951 ORTHO05D008594 1.7e-52 209.5 130 72.3
FAN05G0824 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.7e-52 209.5 144 68.8
Cc06_g04390 Coffea canephora HOM05D006951 ORTHO05D008594 5.0e-52 208.0 127 74.0
Nitab4.5_0024714g0010 Nicotiana tabacum HOM05D006951 ORTHO05D008594 5.0e-52 208.0 132 72.7
Nitab4.5_0002247g0030 Nicotiana tabacum HOM05D006951 ORTHO05D008594 6.5e-52 207.6 132 72.0
FAN02G4365 Fragaria x ananassa HOM05D006951 ORTHO05D008594 8.5e-52 207.2 149 67.1
Prupe.7G127500 Prunus persica HOM05D006951 ORTHO05D008594 8.5e-52 207.2 127 72.4
GSVIVG01033661001 Vitis vinifera HOM05D006951 ORTHO05D008594 8.5e-52 207.2 127 76.4
Ca_08913_v3 Cicer arietinum L. HOM05D006951 ORTHO05D008594 1.1e-51 206.8 127 73.2
CsaV3_6G040080 Cucumis sativus L. HOM05D006951 ORTHO05D008594 1.1e-51 206.8 125 76.0
PGR004G1868 Punica granatum HOM05D006951 ORTHO05D008594 1.1e-51 206.8 127 71.7
FvH4_6g16580 Fragaria vesca HOM05D006951 ORTHO05D008594 1.4e-51 206.5 144 68.8
Nn6g35256 Nelumbo nucifera HOM05D006951 ORTHO05D008594 1.4e-51 206.5 134 68.7
RcHm_v2.0_Chr3g0470511 Rosa chinensis HOM05D006951 ORTHO05D008594 1.9e-51 206.1 148 66.2
vmacro07304 Vaccinium macrocarpon HOM05D006951 ORTHO05D008594 2.5e-51 205.7 127 71.7
MELO3C024481.2 Cucumis melo HOM05D006951 ORTHO05D008594 3.2e-51 205.3 125 74.4
Solyc01g097140.4 Solanum lycopersicum HOM05D006951 ORTHO05D008594 3.2e-51 205.3 132 72.0
Sed0009232 Sechium edule HOM05D006951 ORTHO05D008594 7.2e-51 204.1 126 74.6
Medtr7g102310 Medicago truncatula HOM05D006951 ORTHO05D008594 9.4e-51 203.8 126 71.4
Ciclev10013072m.g Citrus clementina HOM05D006951 ORTHO05D008594 1.2e-50 203.4 123 74.8
Sopen01g040820 Solanum pennellii HOM05D006951 ORTHO05D008594 1.2e-50 203.4 126 74.6
PSO339G4731 Papaver somniferum HOM05D006951 ORTHO05D008594 1.6e-50 203.0 127 69.3
PGSC0003DMG400027515 Solanum tuberosum HOM05D006951 ORTHO05D008594 1.6e-50 203.0 126 74.6
MD12G1109000 Malus domestica HOM05D006951 ORTHO05D008594 2.1e-50 202.6 127 72.4
Peaxi162Scf00282g00715 Petunia axillaris HOM05D006951 ORTHO05D008594 2.1e-50 202.6 127 74.8
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 2.7e-50 202.2 129 69.8
QL07p042869 Quercus lobata HOM05D006951 ORTHO05D008594 2.7e-50 202.2 163 60.7
TAR633G0596 Trochodendron aralioides HOM05D006951 ORTHO05D008594 2.7e-50 202.2 132 65.9
Aqoxy2G01713 Aquilegia oxysepala HOM05D006951 ORTHO05D008594 4.7e-50 201.4 131 70.2
Psat3g041600 Pisum sativum HOM05D006951 ORTHO05D008594 4.7e-50 201.4 125 72.0
MSTRG.10329 Avicennia marina HOM05D006951 ORTHO05D008594 6.1e-50 201.1 133 67.7
arahy.Tifrunner.gnm1.ann1.GEWQ29 Arachis hypogaea HOM05D006951 ORTHO05D008594 1.0e-49 200.3 125 72.0
arahy.Tifrunner.gnm1.ann1.U3DP0D Arachis hypogaea HOM05D006951 ORTHO05D008594 1.0e-49 200.3 125 72.0
PSO801G0767 Papaver somniferum HOM05D006951 ORTHO05D008594 1.0e-49 200.3 127 68.5
TAR369G1149 Trochodendron aralioides HOM05D006951 ORTHO05D008594 1.4e-49 199.9 126 69.0
DCAR_017669 Daucus carota HOM05D006951 ORTHO05D008594 1.8e-49 199.5 132 65.9
Hma1.2p1_0828F.1_g225170 Hydrangea macrophylla HOM05D006951 ORTHO05D008594 1.8e-49 199.5 128 73.4
SalBow5G4485 Salvia bowleyana HOM05D006951 ORTHO05D008594 2.3e-49 199.1 127 72.4
AUR62026921 Chenopodium quinoa HOM05D006951 ORTHO05D008594 8.8e-49 197.2 127 70.9
Nitab4.5_0009274g0040 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.1e-48 196.8 127 71.7
AUR62042061 Chenopodium quinoa HOM05D006951 ORTHO05D008594 1.5e-48 196.4 127 70.1
ECA233G5925 Erigeron canadensis HOM05D006951 ORTHO05D008594 1.5e-48 196.4 128 69.5
Lalb_Chr25g0288931 Lupinus albus HOM05D006951 ORTHO05D008594 1.5e-48 196.4 129 65.9
SalBow5G4376 Salvia bowleyana HOM05D006951 ORTHO05D008594 2.6e-48 195.7 127 71.7
CAN.G134.74 Capsicum annuum HOM05D006951 ORTHO05D008594 3.3e-48 195.3 142 66.2
Lj1g0019165 Lotus japonicus HOM05D006951 ORTHO05D008594 4.4e-48 194.9 128 68.8
EL10Ac7g16659 Beta vulgaris HOM05D006951 ORTHO05D008594 1.3e-47 193.4 127 67.7
SGA_v2.0_scaffold35G14116 Striga asiatica HOM05D006951 ORTHO05D008594 2.8e-47 192.2 128 68.0
HanXRQChr02g0051701 Helianthus annuus HOM05D006951 ORTHO05D008594 1.4e-46 189.9 130 67.7
HanXRQChr13g0400861 Helianthus annuus HOM05D006951 ORTHO05D008594 5.3e-46 188.0 135 62.2
MBI07_g19430_MAGBIO Magnolia biondii HOM05D006951 ORTHO05D008594 1.2e-45 186.8 123 64.2
Os03g0108000 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 1.3e-44 183.3 130 60.8
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 3.8e-44 181.8 114 74.6
Migut.L01713 Erythranthe guttata HOM05D006951 ORTHO05D008594 6.5e-44 181.0 129 65.1
Zm00001eb394010 Zea mays HOM05D006951 ORTHO05D008594 8.5e-44 180.6 131 62.6
ATR0723G063 Amborella trichopoda HOM05D006951 ORTHO05D008594 5.5e-43 177.9 128 61.7
CDE08G0062 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 1.2e-42 176.8 125 62.4
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.6e-42 175.3 137 58.4
CDE02G4226 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 1.5e-40 169.9 125 62.4
SEGI_23238 Sequoiadendron giganteum HOM05D006951 ORTHO05D008594 2.2e-39 166.0 140 56.4
Lsat_1_v5_gn_6_24461 Lactuca sativa HOM05D006951 ORTHO05D008594 2.8e-39 165.6 112 67.0
AT5G03455 Arabidopsis thaliana HOM05D006951 ORTHO05D008594 6.3e-39 164.5 91 92.3
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 4.1e-38 161.8 116 64.7
Pp3c1_27510 Physcomitrium patens HOM05D006951 ORTHO05D008594 8.0e-34 147.5 125 50.4
Dinv35800 Davidia involucrata HOM05D006951 ORTHO05D008594 1.7e-31 139.8 109 63.3
AagrBONN_evm.TU.Sc2ySwM_368.1351 Anthoceros agrestis HOM05D006951 ORTHO05D008594 1.1e-30 137.1 129 50.4
Mapoly0029s0104 Marchantia polymorpha HOM05D006951 ORTHO05D008594 3.1e-30 135.6 111 56.8
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.1e-30 135.6 163 45.4
AagrBONN_evm.TU.Sc2ySwM_340.899 Anthoceros agrestis HOM05D006951 ORTHO05D008594 4.1e-30 135.2 129 50.4
SMO118G0389 Selaginella moellendorffii HOM05D006951 ORTHO05D008594 2.1e-26 122.9 124 50.0
BcaC06g32064 Brassica carinata HOM05D006951 ORTHO05D008594 4.0e-25 118.6 57 93.0
TPR.G32820 Trifolium pratense HOM05D006951 ORTHO05D008594 6.8e-25 117.9 103 57.3
CSS0013835 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 1.3e-23 113.6 73 69.9
TPR.G15158 Trifolium pratense HOM05D006951 ORTHO05D008594 5.5e-19 98.2 65 63.1
CSS0008283 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 1.2e-18 97.1 54 70.4
Atru.chr8.1773 Acer truncatum HOM05D006951 ORTHO05D008594 1.6e-18 96.7 53 75.5
Os10g0545700 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 3.6e-18 95.5 57 64.9
PGR004G2181 Punica granatum HOM05D006951 ORTHO05D008594 1.8e-17 93.2 68 66.2
Hund14405 Selenicereus undatus HOM05D004066 ORTHO05D004434 5.2e-09 65.1 43 65.1
Hund00749 Selenicereus undatus HOM05D004066 ORTHO05D004434 1.5e-08 63.5 43 62.8
Haze_20905 Corylus avellana HOM05D006951 ORTHO05D008594 9.2e-06 54.3 41 63.4


User provided reference genes

Program Settings